Vitamin B5 (pantothenate) and CoA biosynthesis Pathway (Zea mays)

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Peroxisome Mitochondria12.6.1.42alpha-ketoisovalerateGRMZM2G055899pantoate transporterlong chain acyl-coA estersBeta-AlaninevalineL-glutamate Plastid2.1.2.11ketopantoate1.1.1.169(R)-pantoatealpha-ketoglutarate5,10-methylene-tetrahydrofolatetetrahydrofolate (THF)NADPHNADP(R)-pantoate(R)-pantothenate6.3.2.1ATPADPPPi(R)-4'-phosphopantothenate2.7.1.33AMP(R0-4'-phosphopantothenynoyl-L-cysteine6.3.2.54'-phosphopantetheine4.1.1.36CO23'-dephospho-CoA2.7.7.3CoA2.7.1.24cysteinepantetheinepantethine1/2 GSSHGSHATPADP3'-dephospho-CoACoA2.7.1.24ATPADP3'-dephospho-CoACoA2.7.1.24CoA transporterCoACoA/dephospho-CoA transporterCoA/dephospho-CoA transporterlong chain acyl-coA ester carrier (PXA1)long chain acyl-coA estersGRMZM2G071208GRMZM2G010596GRMZM5G876146GRMZM2G104504GRMZM5G808624GRMZM2G008209GRMZM2G002173GRMZM2G127911GRMZM2G407396AC192244.3_FGP007GRMZM2G071294GRMZM2G102015GRMZM2G043819GRMZM2G060045(R)-pantothenate transporterGRMZM2G043819GRMZM2G102015GRMZM2G043819GRMZM2G102015pantethine transporterpantethine(R)-pantothenate


Description

The details of the pantothenate and CoA biosynthesis (especially their compartmentalization) in plants are far from being elucidated. This diagram is an attempt to capture the current state of the field

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Quality Tags

Ontology Terms

 

Bibliography

  1. Gerdes S, Lerma-Ortiz C, Frelin O, Seaver SM, Henry CS, de Crécy-Lagard V, Hanson AD; ''Plant B Vitamin Pathways and their Compartmentation: a Guide for the Perplexed.''; J Exp Bot, 2012 PubMed Europe PMC Scholia
  2. Ottenhof HH, Ashurst JL, Whitney HM, Saldanha SA, Schmitzberger F, Gweon HS, Blundell TL, Abell C, Smith AG; ''Organisation of the pantothenate (vitamin B5) biosynthesis pathway in higher plants.''; Plant J, 2004 PubMed Europe PMC Scholia

History

View all...
CompareRevisionActionTimeUserComment
110989view15:01, 25 June 2020L Dupuisconnected lines
107280view14:37, 17 September 2019MaintBotChEBI identifier normalization
86882view07:49, 14 July 2016MkutmonOntology Term : 'pantothenic acid metabolic pathway' added !
86881view07:49, 14 July 2016MkutmonOntology Term : 'PW:0000167' removed !
78449view10:27, 7 January 2015MaintBotadded missing graphIds
74402view08:22, 16 April 2014EgonwRemoved a data source where no ID was given.
73530view23:39, 29 January 2014KhanspersModified title
72151view10:25, 25 October 2013Mkutmonadded datasource for AC192244.3_FGP007
71955view23:20, 23 October 2013MaintBotremoved data source from nodes without identifier
65173view19:09, 5 June 2013MaintBotadded datasource to GrameneMaize datanodes
65172view19:06, 5 June 2013MaintBotModified categories
55392view05:46, 14 December 2012SvetaGModified description
55377view00:05, 14 December 2012SvetaGSpecify description
55372view23:53, 13 December 2012SvetaGModified description
55370view23:38, 13 December 2012SvetaGSpecify description
55369view23:33, 13 December 2012SvetaGPeriodical save, work in progress
55368view23:08, 13 December 2012SvetaGPeriodical save, work in progress
55145view22:55, 12 December 2012SvetaGSpecify description
55144view22:53, 12 December 2012SvetaGSpecify description
55143view22:50, 12 December 2012SvetaGSpecify description
55142view22:43, 12 December 2012SvetaGPeriodical save, work in progress
55141view22:33, 12 December 2012SvetaGPeriodical save, work in progress
55140view22:21, 12 December 2012SvetaGSpecify description
55137view22:13, 12 December 2012SvetaGPeriodical save, work in progress
55134view21:54, 12 December 2012SvetaGSpecify description
53371view00:31, 6 November 2012PjaiswalModified title
53195view23:08, 30 October 2012PjaiswalModified categories
53194view23:07, 30 October 2012PjaiswalOntology Term : 'vitamin B5 metabolic pathway' added !
53193view23:07, 30 October 2012PjaiswalOntology Term : 'plant cell' added !
53192view23:06, 30 October 2012PjaiswalNew pathway

External references

DataNodes

View all...
NameTypeDatabase referenceComment
(R)-4'-phosphopantothenateMetabolite
(R)-pantoateMetabolite
(R)-pantothenate transporterGeneProduct
(R)-pantothenateMetabolite
(R0-4'-phosphopantothenynoyl-L-cysteineMetabolite
1.1.1.169GeneProduct
1/2 GSSHMetabolite
2.1.2.11GeneProduct2.1.2.11 (EC Number)
2.6.1.42GeneProduct2.6.1.42 (EC Number)
2.7.1.24GeneProduct2.7.1.24 (EC Number)
2.7.1.33GeneProduct2.7.1.33 (EC Number)
2.7.7.3GeneProduct2.7.7.3 (EC Number)
3'-dephospho-CoAMetabolite
4'-phosphopantetheineMetabolite
4.1.1.36GeneProduct4.1.1.36 (EC Number)
5,10-methylene-tetrahydrofolateMetabolite
6.3.2.1GeneProduct6.3.2.1 (EC Number)
6.3.2.5GeneProduct6.3.2.5 (EC Number)
AC192244.3_FGP007GeneProductAC192244.3_FGP007
ADPMetabolite
AMPMetabolite
ATPMetabolite
Beta-AlanineMetabolite16958 (ChEBI)
CO2Metabolite
CoA transporterGeneProduct
CoA/dephospho-CoA transporterGeneProduct
CoAMetabolite
GRMZM2G002173GeneProductGRMZM2G002173
GRMZM2G008209GeneProductGRMZM2G008209
GRMZM2G010596GeneProductGRMZM2G010596
GRMZM2G043819GeneProductGRMZM2G043819 (Gramene Maize)
GRMZM2G055899GeneProductGRMZM2G055899
GRMZM2G060045GeneProductGRMZM2G060045
GRMZM2G071208GeneProductGRMZM2G071208
GRMZM2G071294GeneProductGRMZM2G071294
GRMZM2G102015GeneProductGRMZM2G102015
GRMZM2G102015GeneProductGRMZM2G102015 (Gramene Maize)
GRMZM2G104504GeneProductGRMZM2G104504
GRMZM2G127911GeneProductGRMZM2G127911
GRMZM2G407396GeneProductGRMZM2G407396
GRMZM5G808624GeneProductGRMZM5G808624
GRMZM5G876146GeneProductGRMZM5G876146
GSHMetabolite
L-glutamateMetabolite
NADPMetabolite
NADPHMetabolite
PPiMetabolite
alpha-ketoglutarateMetabolite
alpha-ketoisovalerateMetabolite
cysteineMetabolite
ketopantoateMetabolite
long chain acyl-coA ester carrier (PXA1)GeneProduct
long chain acyl-coA estersMetabolite
pantetheineMetabolite
pantethine transporterGeneProduct
pantethineMetabolite
pantoate transporterGeneProduct
tetrahydrofolate (THF)Metabolite
valineMetabolite

Annotated Interactions

No annotated interactions

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