AtMetExpress overview (Arabidopsis thaliana)

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Revision as of 05:09, 16 March 2016 by Afukushima (Talk | contribs)
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RaffinoseAscorbic acidFructoseCysteineHomoserineThreonineCampesterolSucroseHomocysteinePhosphoenolpyruvic acidGlycerol 2-phosphateCystineMyoinositolSuccinyl-CoALactic acidMyo-inositol 1-phosphateBeta-SitosterolDihydrouracilDehydroascorbic acidGlucose-6-phosphate3-Phosphoglyceric acidFructose 1,6-bisphosphatePyruvic acidSerinePhytolGlucoseMaltoseFlavonoid biosynthesisFructose-6-phosphateIsorhamnetinFatty acid synthesisAcetyl-CoALeucineGlycineGlycerol 3-phosphateNicotianamineGABARhamnoseGlutamic acidXyloseAlanineMannoseThreonic acidGalactinolGlyceric acidOxaloacetic acidNicotinic acidGalacturonic acidArabinoseRiboseTrehaloseLysineAspartic acidBeta-AlanineValineUracilIsoleucineAsparagineCitric acidIsocitric acidcis-Aconitic acid2-Oxo-glutaric acidSuccinic acidFumaric acidMalic acidMethionineS-AdenosylmethionineArginineGlutamineHistidineProlineOrnithineHydroxylaminePutrescineSpermidineEthanolamineF11Shikimic acidQuinic acidPhenylalanineF2TryptophanTyrosineF5F6F3F4TryptamineIndoleGSLTriethanolamineBenzoic acidCaffeic acidAlpha-TocopherolTyramineA11A2A5A6A3A4A7A8A11A9A10F7F8F14F15F19F25F23F20F24F27F28F29F30F32QuercetinKaempferolCyanidinGluconic acidGlutathioneglycerate 3-phosphateC14:0C16:0C18:0C18:2C18:3C24:0CholesterolStigmasterolGlutaric acidSalicylic acid3-MTP3-MSOP4-MSOB4-MTB5-MTP5-MSOP6-MTH6-MSOH7-MTH7-MSOH8-MTO8-MSOOPADAGMGDGDGDGSQDGPCPEPGPIlysoPCTAGTCA cycleLong chain organic acidsSugar metabolismGlycolysisAromatic amino acid metabolismAmino acid metabolismGlucosinolate biosynthesis


Description

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Quality Tags

Ontology Terms

 

Bibliography

  1. Sumner LW, Lei Z, Nikolau BJ, Saito K; ''Modern plant metabolomics: advanced natural product gene discoveries, improved technologies, and future prospects.''; Nat Prod Rep, 2015 PubMed Europe PMC Scholia
  2. Saito K, Yonekura-Sakakibara K, Nakabayashi R, Higashi Y, Yamazaki M, Tohge T, Fernie AR; ''The flavonoid biosynthetic pathway in Arabidopsis: structural and genetic diversity.''; Plant Physiol Biochem, 2013 PubMed Europe PMC Scholia
  3. Fukushima A, Kusano M; ''Recent progress in the development of metabolome databases for plant systems biology.''; Front Plant Sci, 2013 PubMed Europe PMC Scholia

History

View all...
CompareRevisionActionTimeUserComment
134319view11:25, 20 July 2024EweitzOntology Term : 'amino acid metabolic pathway' added !
134318view11:25, 20 July 2024EweitzOntology Term : 'flavonoid biosynthetic pathway' added !
134317view11:24, 20 July 2024EweitzOntology Term : 'fatty acid biosynthetic pathway' added !
134314view11:15, 20 July 2024EweitzOntology Term : 'citric acid cycle pathway' added !
134313view11:14, 20 July 2024EweitzOntology Term : 'glycolysis pathway' added !
134270view06:46, 19 July 2024EgonwRemoved template comments
105906view11:40, 16 August 2019MkutmonHMDB identifier normalization
105229view08:04, 23 July 2019EgonwReplaced a (no longer) existing HMDB identifier.
102131view07:19, 2 December 2018EgonwFixed the data source, was KNApSAcK not KEGG, for five compounds.
89229view07:57, 24 August 2016Afukushimaadded KNApSAcK-IDs for isorhamnetin derivatives
89228view07:54, 24 August 2016Afukushimaadded KNApSAcK-IDs for quercetin derivatives
89227view07:50, 24 August 2016Afukushimaadded KNApSAcK-IDs for kaempferol derivatives
89226view07:43, 24 August 2016Afukushimaadded KNApSAcK-IDs for anthocyanins
89135view21:51, 22 August 2016AriuttaOntology Term : 'classic metabolic pathway' added !
84720view07:29, 16 March 2016AfukushimaSpecify description
84719view07:23, 16 March 2016AfukushimaModified description
84718view07:16, 16 March 2016Afukushimaadded literature
84717view07:08, 16 March 2016AfukushimaReverted to version '05:06, 16 March 2016' by Afukushima
84716view05:09, 16 March 2016AfukushimaReverted to version '03:42, 15 March 2016' by Afukushima
84715view05:06, 16 March 2016Afukushimaadded litt of F1
84714view05:04, 16 March 2016Afukushimaadded literature of A1
84675view03:42, 15 March 2016AfukushimaNew pathway

External references

DataNodes

View all...
NameTypeDatabase referenceComment
2-Oxo-glutaric acidMetaboliteHMDB00208 (HMDB)
3-MSOPMetaboliteC08405 (KEGG Compound)
3-MTPMetaboliteC08412 (KEGG Compound)
3-Phosphoglyceric acidMetaboliteHMDB00807 (HMDB)
4-MSOBMetaboliteC08410 (KEGG Compound)
4-MTBMetaboliteC08409 (KEGG Compound)
5-MSOPMetaboliteC08400 (KEGG Compound)
5-MTPMetaboliteC08401 (KEGG Compound)
6-MSOHMetaboliteC00007348 (KEGG Compound)
6-MTHMetaboliteC00007844 (KEGG Compound)
7-MSOHMetaboliteC00007352 (KEGG Compound)
7-MTHMetaboliteC00007353 (KEGG Compound)
8-MSOOMetaboliteC00007355 (KEGG Compound)
8-MTOMetaboliteC00007356 (KEGG Compound)
A10Metabolite
A11Metabolite
A1MetaboliteC20493 (KEGG Compound)
  • Cyanidin 3-sambubioside-5-glucoside
  • Type your comment here
A2Metabolite
A3Metabolite
A4Metabolite
A5Metabolite
A6Metabolite
A7Metabolite
A8Metabolite
A9Metabolite
Acetyl-CoAMetaboliteHMDB01206 (HMDB)
AlanineMetaboliteHMDB00161 (HMDB)
Alpha-TocopherolMetaboliteHMDB01893 (HMDB)
Amino acid metabolismPathway
ArabinoseMetaboliteHMDB29942 (HMDB)
ArginineMetaboliteHMDB00517 (HMDB)
Aromatic amino acid metabolismPathway
Ascorbic acidMetaboliteHMDB00044 (HMDB)
AsparagineMetaboliteHMDB00168 (HMDB)
Aspartic acidMetaboliteHMDB00191 (HMDB)
Benzoic acidMetaboliteHMDB01870 (HMDB)
Beta-AlanineMetaboliteHMDB00056 (HMDB)
Beta-SitosterolMetaboliteHMDB00852 (HMDB)
C14:0MetaboliteHMDB00806 (HMDB)
C16:0MetaboliteHMDB00220 (HMDB)
C18:0MetaboliteHMDB00827 (HMDB)
C18:2MetaboliteHMDB00673 (HMDB)
C18:3MetaboliteHMDB01388 (HMDB)
C24:0MetaboliteHMDB02003 (HMDB)
Caffeic acidMetaboliteHMDB01964 (HMDB)
CampesterolMetaboliteHMDB02869 (HMDB)
CholesterolMetaboliteHMDB00067 (HMDB)
Citric acidMetaboliteHMDB00094 (HMDB)
CyanidinMetaboliteHMDB02708 (HMDB)
CysteineMetaboliteHMDB00574 (HMDB)
CystineMetaboliteHMDB00192 (HMDB)
DAGMetaboliteC00165 (KEGG Compound)
DGDGMetabolite28495919 (Chemspider)
Dehydroascorbic acidMetaboliteHMDB01264 (HMDB)
DihydrouracilMetaboliteHMDB00076 (HMDB)
EthanolamineMetaboliteHMDB00149 (HMDB)
F14Metabolite
F15Metabolite
F19Metabolite
F1MetaboliteC16981 (KEGG Compound)
F2Metabolite
F20Metabolite
F23Metabolite
F24MetaboliteC01750 (KEGG Compound)
F25Metabolite
F27Metabolite
F28Metabolite
F29Metabolite
F3Metabolite
F30Metabolite
F32Metabolite
F4Metabolite
F5Metabolite
F6Metabolite
F7MetaboliteC19796 (KEGG Compound)
F8Metabolite
Fatty acid synthesisPathway
Flavonoid biosynthesisPathway
Fructose 1,6-bisphosphateMetaboliteHMDB01058 (HMDB)
Fructose-6-phosphateMetaboliteHMDB00124 (HMDB)
FructoseMetaboliteHMDB00660 (HMDB)
Fumaric acidMetaboliteHMDB00134 (HMDB)
GABAMetaboliteHMDB00112 (HMDB)
GalactinolMetaboliteHMDB05826 (HMDB)
Galacturonic acidMetaboliteHMDB02545 (HMDB)
Gluconic acidMetaboliteHMDB00625 (HMDB)
Glucose-6-phosphateMetaboliteHMDB01401 (HMDB)
GlucoseMetaboliteHMDB00122 (HMDB)
Glucosinolate biosynthesisPathway
Glutamic acidMetaboliteHMDB00148 (HMDB)
GlutamineMetaboliteHMDB00641 (HMDB)
Glutaric acidMetaboliteHMDB00661 (HMDB)
GlutathioneMetaboliteHMDB00125 (HMDB)
Glyceric acidMetaboliteHMDB00139 (HMDB)
Glycerol 2-phosphateMetaboliteC02979 (KEGG Compound)
Glycerol 3-phosphateMetaboliteHMDB00126 (HMDB)
GlycineMetaboliteHMDB00123 (HMDB)
GlycolysisPathway
HistidineMetaboliteHMDB00177 (HMDB)
HomocysteineMetaboliteHMDB00742 (HMDB)
HomoserineMetaboliteHMDB00719 (HMDB)
HydroxylamineMetaboliteHMDB03338 (HMDB)
IndoleGSLMetabolite
Isocitric acidMetaboliteHMDB00193 (HMDB)
IsoleucineMetaboliteHMDB00172 (HMDB)
IsorhamnetinMetaboliteHMDB02655 (HMDB)
KaempferolMetaboliteHMDB05801 (HMDB)
Lactic acidMetaboliteHMDB00190 (HMDB)
LeucineMetaboliteHMDB00687 (HMDB)
Long chain organic acidsPathway
LysineMetaboliteHMDB00182 (HMDB)
MGDGMetabolite4696840 (Chemspider)
Malic acidMetaboliteHMDB00744 (HMDB)
MaltoseMetaboliteHMDB00163 (HMDB)
MannoseMetaboliteHMDB00169 (HMDB)
MethionineMetaboliteHMDB00696 (HMDB)
Myo-inositol 1-phosphateMetaboliteHMDB00213 (HMDB)
MyoinositolMetaboliteHMDB00211 (HMDB)
NicotianamineMetaboliteC05324 (KEGG Compound)
Nicotinic acidMetaboliteHMDB01488 (HMDB)
OrnithineMetaboliteHMDB00214 (HMDB)
Oxaloacetic acidMetaboliteHMDB00223 (HMDB)
PAMetaboliteC00416 (KEGG Compound)
PCMetabolite4946694 (Chemspider)
PEMetabolite7825685 (Chemspider)
PGMetabolite8593139 (Chemspider)
PIMetabolite20058759 (Chemspider)
PhenylalanineMetaboliteHMDB00159 (HMDB)
Phosphoenolpyruvic acidMetaboliteHMDB00263 (HMDB)
PhytolMetaboliteHMDB02019 (HMDB)
ProlineMetaboliteHMDB00162 (HMDB)
PutrescineMetaboliteHMDB01414 (HMDB)
Pyruvic acidMetaboliteHMDB00243 (HMDB)
QuercetinMetaboliteHMDB05794 (HMDB)
Quinic acidMetaboliteHMDB03072 (HMDB)
RaffinoseMetaboliteHMDB03213 (HMDB)
RhamnoseMetaboliteHMDB00849 (HMDB)
RiboseMetaboliteHMDB00283 (HMDB)
S-AdenosylmethionineMetaboliteHMDB01185 (HMDB)
SQDGMetabolite140119 (Chemspider)
Salicylic acidMetaboliteHMDB01895 (HMDB)
SerineMetaboliteHMDB00187 (HMDB)
Shikimic acidMetaboliteHMDB03070 (HMDB)
SpermidineMetaboliteHMDB01257 (HMDB)
StigmasterolMetaboliteHMDB00937 (HMDB)
Succinic acidMetaboliteHMDB00254 (HMDB)
Succinyl-CoAMetaboliteHMDB01022 (HMDB)
SucroseMetaboliteC00089 (KEGG Compound)
Sugar metabolismPathway
TAGMetabolite4575640 (Chemspider)
TCA cyclePathway
Threonic acidMetaboliteHMDB00943 (HMDB)
ThreonineMetaboliteHMDB00167 (HMDB)
TrehaloseMetaboliteHMDB00975 (HMDB)
TriethanolamineMetaboliteHMDB32538 (HMDB)
TryptamineMetaboliteHMDB00303 (HMDB)
TryptophanMetaboliteHMDB00929 (HMDB)
TyramineMetaboliteHMDB00306 (HMDB)
TyrosineMetaboliteHMDB00158 (HMDB)
UracilMetaboliteHMDB00300 (HMDB)
ValineMetaboliteHMDB00883 (HMDB)
XyloseMetaboliteHMDB00098 (HMDB)
cis-Aconitic acidMetaboliteHMDB00072 (HMDB)
glycerate 3-phosphateMetaboliteHMDB00807 (HMDB)
lysoPCMetabolite24766528 (Chemspider)

Annotated Interactions

No annotated interactions

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