Plant primary metabolism (Arabidopsis thaliana)

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ArcPathVisio Brace Ellipse EndoplasmicReticulum GolgiApparatus HexagonPathVisio MimDegradation Mitochondria Octagon PentagonPathVisio Rectangle RoundedRectangle SarcoplasmicReticulum TriangleEquilateralEast TrianglePathVisio none H2Ophosphoglycerate mutase 1phosphoglycerate mutase 2glycerate 2-phosphateglyceraldehyde 3-phosphate dehydrogenase 1glyceraldehyde 3-phosphate dehydrogenase 2fructose 1,6-bisphosphateoxaloacetateNAD+phosphoenolpyruvate carboxylase 4phosphoenolpyruvate carboxylase 2phosphoenolpyruvate carboxylase 1phosphoenolpyruvate carboxylase 3glycerate 1,3-bisphosphatePPi-dependent phosphofructokinase beta 1PPi-dependent phosphofructokinase beta 2PPi-dependent phosphofructokinase alpha 1PPi-dependent phosphofructokinase alpha 2malic enzyme 1malic enzyme 2malic enzyme 3PPiphosphoglycerate kinaseHCO3-phosphoenolpyruvatefructose 6-phosphateenolase 2enolase 3malatefructose 1,6-bisphosphate aldolaseNADHpyruvatepyruvate kinaseglycerate 3-phosphateDihydroxyacetone phosphateglyceraldahyde-3-phosphatetriose phosphate isomeraseNADPHNADP+ATPADPmalate dehydrogenase 2malate dehydrogenase 1NADP+NADPHATPADPATP-dependent phosphofructokinase 1ATP-dependent phosphofructokinase 2ATP-dependent phosphofructokinase 3ATP-dependent phosphofructokinase 6ATP-dependent phosphofructokinase 7PiATPADPPiPiName: Plant Primary MetabolismLast Modified: 10/17/2013Organism: Arabidopsis thaliana


Description

Plant Primary Metabolism Metapathway

Contains:

- Calvin Cycle (chloroplast) - Glycolysis (cytosol) - Krebs Cycle (mitochondria) - Chloroplastic Amino Acid Metabolism - Chloroplast Electron Transport Chain - Sucrose Metabolism - Starch Metabolism

Does not yet contain A. thaliana annotations.

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Quality Tags

Ontology Terms

 

Bibliography

  1. Karve A, Rauh BL, Xia X, Kandasamy M, Meagher RB, Sheen J, Moore BD; ''Expression and evolutionary features of the hexokinase gene family in Arabidopsis.''; Planta, 2008 PubMed Europe PMC Scholia

History

View all...
CompareRevisionActionTimeUserComment
118341view13:23, 27 May 2021Mkutmonfix publication ref
117249view09:59, 19 May 2021EweitzModified title
105907view11:40, 16 August 2019MkutmonHMDB identifier normalization
86019view18:18, 25 June 2016KhanspersModified description
84678view13:38, 15 March 2016Maria CeciliaNew pathway

External references

DataNodes

View all...
Name  ↓Type  ↓Database reference  ↓Comment  ↓
ADPMetabolite
ATP-dependent phosphofructokinase 1ProteinQ9M0F9 (Uniprot-TrEMBL)
ATP-dependent phosphofructokinase 2ProteinQ9FIK0 (Uniprot-TrEMBL)
ATP-dependent phosphofructokinase 3ProteinQ94AA4 (Uniprot-TrEMBL)
ATP-dependent phosphofructokinase 6ProteinQ9M076 (Uniprot-TrEMBL)
ATP-dependent phosphofructokinase 7ProteinQ9C5J7 (Uniprot-TrEMBL)
ATPMetaboliteHMDB00538 (HMDB)
Dihydroxyacetone phosphateMetaboliteHMDB01473 (HMDB)
H2OMetabolite
HCO3-Metabolite
NAD+MetaboliteHMDB00902 (HMDB)
NADHMetaboliteHMDB01487 (HMDB)
NADP+MetaboliteHMDB00217 (HMDB)
NADP+MetaboliteHMDB00902 (HMDB)
NADPHMetaboliteHMDB00221 (HMDB)
NADPHMetaboliteHMDB01487 (HMDB)
PPiMetabolite
PPi-dependent phosphofructokinase alpha 1ProteinQ9SYP2 (Uniprot-TrEMBL)
PPi-dependent phosphofructokinase alpha 2ProteinQ9C9K3 (Uniprot-TrEMBL)
PPi-dependent phosphofructokinase beta 1ProteinQ8W4M5 (Uniprot-TrEMBL)
PPi-dependent phosphofructokinase beta 2ProteinF4JGR5 (Uniprot-TrEMBL)
PiMetabolite
enolase 2ProteinP25696 (Uniprot-TrEMBL)
enolase 3ProteinQ9ZW34 (Uniprot-TrEMBL)
fructose 1,6-bisphosphate aldolaseProteinP22197 (Uniprot-TrEMBL)
fructose 1,6-bisphosphateMetaboliteHMDB01058 (HMDB)
fructose 6-phosphateMetaboliteHMDB00124 (HMDB)
glyceraldahyde-3-phosphateMetabolite
glyceraldehyde 3-phosphate dehydrogenase 1ProteinP25858 (Uniprot-TrEMBL)
glyceraldehyde 3-phosphate dehydrogenase 2ProteinQ9FX54 (Uniprot-TrEMBL)
glycerate 1,3-bisphosphateMetabolite
glycerate 2-phosphateMetabolite
glycerate 3-phosphateMetabolite
malateMetabolite
malate dehydrogenase 1ProteinP93819 (Uniprot-TrEMBL)
malate dehydrogenase 2ProteinP57106 (Uniprot-TrEMBL)
malic enzyme 1ProteinO82191 (Uniprot-TrEMBL)
malic enzyme 2ProteinQ9LYG3 (Uniprot-TrEMBL)
malic enzyme 3ProteinQ9XGZ0 (Uniprot-TrEMBL)
oxaloacetateMetabolite
phosphoenolpyruvateMetabolite
phosphoenolpyruvate carboxylase 1ProteinQ9MAH0 (Uniprot-TrEMBL)
phosphoenolpyruvate carboxylase 2ProteinQ5GM68 (Uniprot-TrEMBL)
phosphoenolpyruvate carboxylase 3ProteinQ84VW9 (Uniprot-TrEMBL)
phosphoenolpyruvate carboxylase 4ProteinQ8GVE8 (Uniprot-TrEMBL)
phosphoglycerate kinaseProteinQ9SAJ4 (Uniprot-TrEMBL)
phosphoglycerate mutase 1ProteinO04499 (Uniprot-TrEMBL)
phosphoglycerate mutase 2ProteinQ9M9K1 (Uniprot-TrEMBL)
pyruvateMetabolite
pyruvate kinaseProteinQ9FFP6 (Uniprot-TrEMBL)
triose phosphate isomeraseProteinP48491 (Uniprot-TrEMBL)

Annotated Interactions

No annotated interactions

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