Selenium micronutrient network (Rattus norvegicus)

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REACTIONGENERIC BINDING PROTEINUnspecified interactions Influence on expression TransportINORGANIC IONPLASMAINTRACELULARGENERIC ENZYMEPositive effect Transformation Negative effect METABOLITEBindingCysteineBAscorbic acidEPA (n-3)TNiPF2-alphaEndoperoxidaseBLeukotriene D4PNPOBSelRZincRiboflavinFADIronPGF2aAA (n-6)Sod1Pyridoxal 5'-phosphateBXanthineFads2Gpx2COX1Vitamin B12Lipoic acidFads1RNSO2Gpx3Leukotriene E4Alox5BLeukotriene B4BBCopperPGI2TRXR 3LA (n-6)PGF2aTbxas1MthfrPGE2IEBLeukotriene C4HomocysteineFolic acidTBa-tocopherolIronBPGG2GlutathioneHypoxanthine Ptgisa-TocopherolLeukotriene C4PGE3Lipoxin B4BH2OMtrGsr5-HPETESeleniumDHA (n-3)BLipoxin A4C22:5 (n-6)BLeukotriene A4Vitamin B12ALA (n-3)LA (n-6)C22:5 (n-6)Lipoxin A4Thioredoxin15-HETEF2-IsoprostaneTCopperPGH3NADPBFMNBLeukotrieneE4Leukotriene B4HemeTPGH2PtgdsAA (n-6)HomocysteineGpx1TPGG3Gpx4d4 desaturaseTTryptophanPGD2XdhLeukotriene F4BBCatDHA (n-3)glutathione disulfideTromboxane A2COX2Methionine sulfoxideHypoxanthineSelWBSepp1PGE2ZincIEBNiacin15-HETEGlutathioneSeleniumGpx6TKmoAscorbic acidBUric acidTFolic acidNADPHPyridoxal 5'-phosphateEPA (n-3)TCysteineTRXR 2TRXR 1NADPHThromboxane A2ALA (n-3)PGI2BLeukotriene D4TNBPtgesUric AcidPGD2Methionine NADPSelkH2O2Thromboxane B2BMethioninePGFSBBTManganeseBROS12


Description

The selenium-centred micronutrient biological network. The most relevant biochemical processes related to selenium in the context of metabolism, oxidation and inflammation are represented. Also, the compartmental separation (intracellular vs. plasma) is presented, identifying the selenium centred plasma metabolome. A selenoprotein database exists at: http://www.selenodb.org.

Comments

HomologyConvert 
This pathway was inferred from Homo sapiens pathway WP15(r29615) with a 55% conversion rate.

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Quality Tags

Ontology Terms

 

Bibliography

  1. Guzik TJ, Korbut R, Adamek-Guzik T.; ''Nitric oxide and superoxide in inflammation and immune regulation.''; J Physiol Pharmacol., 2003 PubMed Europe PMC Scholia
  2. Denis D, Charleson S, Rackham A, Jones TR, Ford-Hutchinson AW, Lord A, Cirino M, Girard Y, Larue M, Rokach J.; ''Synthesis and biological activities of leukotriene F4 and leukotriene F4 sulfone.''; Prostaglandins., 1982 PubMed Europe PMC Scholia

History

View all...
CompareRevisionActionTimeUserComment
120918view06:30, 31 January 2022EgonwReplaced an old HMDB identifier with the current one
117013view11:23, 16 May 2021EweitzModified title
106962view13:42, 17 September 2019MaintBotHMDB identifier normalization
91818view06:29, 31 March 2017EgonwROS is a metabolite, and better annotated with the matching Wikidata ID.
87652view08:54, 25 July 2016LindarieswijkOntology Term : 'selenoamino acid metabolic pathway' added !
82693view18:05, 22 October 2015EgonwFixed a typo.
73553view18:32, 30 January 2014EgonwH2O not H20....
71774view20:30, 17 October 2013MaintBotAutomated update of data sources
69346view18:52, 8 July 2013MaintBotUpdated to 2013 gpml schema
69078view18:09, 8 July 2013EgonwReplaced an outdated HMDB identifier with the 3.5 one.
68388view10:11, 4 July 2013EgonwMade the link to Wikipedia machine readable.
68387view10:08, 4 July 2013EgonwFixed a number of DataNode types.
66317view17:34, 17 June 2013MaintBotModified title
58922view05:10, 21 February 2013MaintBotUpdated Ensembl and UniProt data source
58521view20:15, 14 February 2013MaintBotModified title
41659view02:34, 2 March 2011MaintBotRemoved redundant pathway information and comments
34057view19:04, 9 December 2009MaintBotAutomatic update of empty xrefs
31907view12:48, 14 August 2009MaintBotFixed group labels
31015view01:06, 30 July 2009MaintBotNew pathway

External references

DataNodes

View all...
NameTypeDatabase referenceComment
15-HETEMetaboliteHMDB11134 (HMDB)
5-HPETEMetaboliteHMDB01193 (HMDB)
AA (n-6)MetaboliteHMDB01043 (HMDB)
ALA (n-3)MetaboliteHMDB01388 (HMDB)
Alox5Protein25290 (Entrez Gene)
Ascorbic acidMetaboliteHMDB00044 (HMDB)
BMetabolite
C22:5 (n-6)MetaboliteHMDB01976 (HMDB)
COX1Protein26195 (Entrez Gene)
COX2Protein26198 (Entrez Gene)
CatProtein24248 (Entrez Gene)
CopperMetaboliteHMDB00657 (HMDB)
CysteineMetaboliteHMDB00574 (HMDB)
DHA (n-3)MetaboliteHMDB02183 (HMDB)
EPA (n-3)MetaboliteHMDB01999 (HMDB)
EndoperoxidaseProtein
F2-IsoprostaneMetaboliteHMDB04659 (HMDB)
FADMetaboliteHMDB01248 (HMDB)
FMNGeneProduct342184 (Entrez Gene)
Fads1Protein84575 (Entrez Gene)
Fads2Protein83512 (Entrez Gene)
Folic acidMetaboliteHMDB00121 (HMDB)
GlutathioneMetaboliteHMDB00125 (HMDB)
Gpx1Protein24404 (Entrez Gene)
Gpx2Protein29326 (Entrez Gene)
Gpx3Protein64317 (Entrez Gene)
Gpx4Protein29328 (Entrez Gene)
Gpx6Protein259233 (Entrez Gene)
GsrProteinENSRNOG00000014915 (Ensembl)
H2O2MetaboliteHMDB03125 (HMDB)
H2OMetaboliteHMDB02111 (HMDB)
HemeMetaboliteHMDB03178 (HMDB)
HomocysteineMetaboliteHMDB00742 (HMDB)
Hypoxanthine MetaboliteHMDB00157 (HMDB)
HypoxanthineMetaboliteHMDB00157 (HMDB)
IEMetabolite
IronMetaboliteHMDB00692 (HMDB)
KmoProtein59113 (Entrez Gene)
LA (n-6)MetaboliteHMDB00673 (HMDB)
Leukotriene A4MetaboliteHMDB01337 (HMDB)
Leukotriene B4MetaboliteHMDB01085 (HMDB)
Leukotriene C4MetaboliteHMDB01198 (HMDB)
Leukotriene D4MetaboliteHMDB03080 (HMDB)
Leukotriene E4MetaboliteHMDB02200 (HMDB)
Leukotriene F4MetaboliteHMDB06465 (HMDB)
LeukotrieneE4MetaboliteHMDB02200 (HMDB)
Lipoic acidMetabolite
Lipoic acidMetaboliteHMDB01451 (HMDB)
Lipoxin A4MetaboliteHMDB04385 (HMDB)
Lipoxin B4MetaboliteHMDB05082 (HMDB)
ManganeseMetaboliteHMDB01333 (HMDB)
Methionine MetaboliteHMDB00696 (HMDB)
Methionine sulfoxideMetaboliteHMDB02005 (HMDB)
MethionineMetaboliteHMDB00696 (HMDB)
MthfrProtein362657 (Entrez Gene)
MtrProtein81522 (Entrez Gene)
NADPHMetaboliteHMDB00221 (HMDB)
NADPMetaboliteHMDB00217 (HMDB)
NiacinMetaboliteHMDB01406 (HMDB)
O2MetaboliteHMDB01377 (HMDB)
PGD2MetaboliteHMDB01403 (HMDB)
PGE2Metabolite
PGE3MetaboliteHMDB02664 (HMDB)
PGF2aMetaboliteHMDB01139 (HMDB)
PGFSProtein
PGG2MetaboliteHMDB03235 (HMDB)
PGG3Metabolite
PGH2MetaboliteHMDB01381 (HMDB)
PGH3Metabolite
PGI2MetaboliteHMDB01335 (HMDB)
PNPOProtein64533 (Entrez Gene)
PtgdsProtein25526 (Entrez Gene)
PtgesProtein59103 (Entrez Gene)
PtgisProtein25527 (Entrez Gene)
Pyridoxal 5'-phosphateMetaboliteHMDB01491 (HMDB)
RNSMetabolite
ROSMetaboliteQ424361 (Wikidata) http://en.wikipedia.org/wiki/Reactive_Oxygen_Species
RiboflavinMetaboliteHMDB00244 (HMDB)
SelRGeneProduct51734 (Entrez Gene)
SelWGeneProduct6415 (Entrez Gene)
SeleniumMetaboliteHMDB01349 (HMDB)
SelkProtein290549 (Entrez Gene)
Sepp1Protein29360 (Entrez Gene)
Sod1Protein24786 (Entrez Gene)
TMetabolite
TGeneProduct292301 (Entrez Gene)
TNMetabolite
TRXR 1GeneProduct7296 (Entrez Gene)
TRXR 2GeneProduct10587 (Entrez Gene)
TRXR 3GeneProduct114112 (Entrez Gene)
Tbxas1Protein24886 (Entrez Gene)
ThioredoxinProtein7295 (Entrez Gene)
Thromboxane A2MetaboliteHMDB01452 (HMDB)
Thromboxane B2MetaboliteHMDB03252 (HMDB)
Tromboxane A2MetaboliteHMDB01452 (HMDB)
TryptophanMetaboliteHMDB00929 (HMDB)
Uric AcidMetaboliteHMDB00289 (HMDB)
Uric acidMetabolite
Vitamin B12MetaboliteHMDB02174 (HMDB)
XanthineMetaboliteHMDB00292 (HMDB)
XdhProtein497811 (Entrez Gene)
ZincMetaboliteHMDB01303 (HMDB)
a-TocopherolMetaboliteHMDB01893 (HMDB)
a-tocopherolMetaboliteHMDB01893 (HMDB)
d4 desaturaseProtein
glutathione disulfideMetaboliteHMDB00656 (HMDB)
iPF2-alphaMetaboliteHMDB04659 (HMDB)

Annotated Interactions

No annotated interactions
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