From WikiPathways

Contents 1 Hands-on Exercises for CPTAC 1.1 1. Selecting Cancer Hallmark Pathways 1.2 2. Authoring Pathway Models 1.3 3. Data Visualization with Cytoscape 1.4 4. WikiPathways and Cytoscape Automation

Hands-on Exercises for CPTAC

Here are a few diverse options for how you can work with WikiPathways to enhance CPTAC research. Choose any of the following adventures...

1. Selecting Cancer Hallmark Pathways

Become a biocurator and lend your expertise and knowledge to improve the collection of Cancer Hallmark Pathways in the CPTAC Portal.

• Let's get started!

2. Authoring Pathway Models

Become an author of your own pathway or help improve existing pathway content. Learn how to interpret and create pathway models via our step-by-step learning program called WikiPathways Academy.

• Take me to the academy!

3. Data Visualization with Cytoscape

Become a data viz guru by learning the ins and outs of the most powerful network visualization tool, Cytoscape. There are a ton of online tutorials to get you started.

• Cytoscape, here I come!

4. WikiPathways and Cytoscape Automation

Become adapt at integrating pathway and network analysis into your bioinformatic workflows using R. We have easy-to-use R packages for each. Check out the vignettes.

• rWikiPathways
• RCy3