View source
From WikiPathways
Start a new discussionOxysterols (1)
There have been no changes to this discussion for at least 30 days. If it is concluded, you may want to write a summary.
I annotated this compound with the KEGG Compound ID for 3beta-Hydroxysterol, however, that is just one example of an oxysterol. This pathway refers to the class of compounds 'oxysterols', for which it seems there is no suitable identifier... Is there a chemical ontology that could be used? It seems like there should be. In the end I went with the Wikipedia article of the same name.
Another alternative would be to allow a new 'Metabolite class' object, and provide several compound annotations for the class... but that seems wrong now I think about it (the class should be defined externally to a pathway).
Oh, and I also found another bug, somehow, after originally opening the pathway editor, I was logged out of the site. Then when I came to save, it didn't warn me about not being logged in, instead it barfed, causing me to loose my changes. That would be painfully annoying if I had done any substantial editing.
Cheers, --Dmb 12:15, 23 August 2011 (UTC)
Almost Ready (1)
There have been no changes to this discussion for at least 30 days. If it is concluded, you may want to write a summary.
You do not have permission to edit pages, for the following reason:
You can view and copy the source of this page:
Return to Pathway Talk:WP1982.
Nice work. Thanks for adding the database connections. Another trick is to add anchors to lines that are intersected by other lines. Anchors provide a way to proper connect a line to another line and have it "stick." I went ahead and added the anchors. I also rerouted a few edges for clarity. And renamed one of the Insig1 molecules to Insig2. If any of this is incorrect, please feel free to undo or fix the changes. --AlexanderPico 03:27, 28 April 2011 (UTC)
