Host Interactions of HIV factors (Homo sapiens)

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524923, 512718, 28, 3514, 4729, 3210222, 8, 5324930516, 3649571331307191965027126, 43275321, 507, 1219425024, 40, 4311, 259, 16, 33, 39, 44...5157154930577, 1243, 483813573054491mitochondrial intermembrane spacemitochondrial matrixGolgi lumencytosolearly endosome membranenucleoplasmendoplasmic reticulum lumenearly endosome membraneUBB(153-228) NUP155 myristoylated nef XPO1 PSMA5 CD8:Nef:AP-2Complex:v-ATPaseComplexRANBP2 PSMD3 Ran-GTPP-TEFb(CyclinT1:Cdk9) complexAP2S1 myristoylated nefPSMB4 RANBP1 AP2A2(1-939) PSMC4 PSMB6 ATP6V1H AP2S1 AP1S1 HIV-1 unspliced RNAtRNA-Lysine3 myristoylated nef VPR (P69726) protein ELOB Nup45 Rev multimer-boundHIV-1mRNA:Crm1:Ran:GTPCD4 HIV-1 mRNA NUP54 NUP37 NUP62 NUP188 UBC(305-380) MA (P04591) protein AP2A1 RANBP2 AP1G1 tRNA-Lysine3 p51 (RT) NDC1 Rev-multimer p6 (P04591) protein MA (P04585) protein PSIP1 VIF (P69723) protein AP1M1 NUP153 LCKNUP214 NUP50 NPM1 RANGAP1TPR myristoylated nef VPU (P05919) protein myristoylated nefSKP1UBC(77-152) BTRC APOBEC3GPSIP1 NPM1 PSMC6 CD4 NUP85 ATP6V1HNUP205 PSMD1 AP2M1 PSME2 PSMD2 SEH1L-2 NUP153 KPNB1UBB(77-152) Rev:Importin-beta:NPM1NUP35 PSMD4 VPU (P05919) HIV-1 mRNA myristoylated nef CD28 PSMB6 VPR NUP160 myristoylated nef HIV-1 mRNA Rev-bound HIV-1 mRNAAP2S1 RAN ATP6V1HAP2M1 AP2A1 NUP98-5 Fyn:Nef ComplexRev-multimerRAN RANBP2 BANF1 Nup45 CD4:Vpu:beta-TrCP_1AP1M2 PSIP1 HLA class I histocompatibility antigen, A-2 alpha chain PSMF1 ATP6V1H myristoylated nef Rev-multimerUBC(77-152) PACS1 myristoylated nef PSME2 PSMB5 AP2M1CUL5 AP2A1 Rev-multimer UBC(153-228) NUP210 PPIA PSMD10 PSMB9 UBB(153-228) APOBEC3G:HIV-1PICArf1:Nef:endosomalCD4AP2A2(1-939) PIC anchored to theNPCAP2B1 NUP98-4 RAN NUP98-4 B2M(21-119) NUP88 VPU (P05919) protein RANBP2 VPR (P69726) protein IN (Integrase) (P04585) protein IN bound to sticky3' ends of viralDNA in PICPSMC3 APOBEC3G PSMA3 p6 (P04585) protein SKP1 IN (Integrase) (P04585) protein p6 (P04591) protein 26S proteasomep6 (P04591) protein GTP Lck:NefPSMA4 NUP37 FYN Rev-multimer PSMB1 POM121C CCNT1 NUP107 NH3AP2B1 ELOB CDK9 VPU (P05919) protein APOBEC3G KPNA1 AP2M1 ELMO1VPR IN (Integrase) (P04585) protein LCK Rev-multimer XPO1 PSMB11 p6 (P04591) protein PSMD8 HLA class I histocompatibility antigen, A-2 alpha chain NUP98-5 PSMD6 SHFM1 SLC25A5 NUP88 p6 (P04585) protein CD4 MA (P04585) protein PSMB11 NPM1DOCK2PSMB2 CCNT1 PSMA7 PSMA6 NUP62 IN (Integrase) (P04585) protein Nef:class I MHCcomplex:Ap-1:PACS-1ComplexUBC(533-608) APOBEC3G:Vif:Cul5:SCF complexPSMC6 KPNB1 HMGA1 XPO1 NUP210 PSMD11 Rev multimer-boundHIV-1 mRNAPSMB1 REV (P04618) protein Rev-multimer PSMD9 myristoylated nef HIV-1 mRNA Tat (P04608) AP1M2 Nef:class I MHCcomplex:AP-1:PACS-1ComplexNuclear Pore Complex(NPC)Rev multimer-boundHIV-1mRNA:Crm1:Ran:GTPCDK9 UBC(609-684) VPU (P05919) CD4:Vpu complexNUPL2 PAK2(1-524)IN (Integrase) (P04585) protein BTRC PAK2(1-524) VPR (P69726) protein myristoylated nef p6 (P04591) protein myristoylated nefNUP98-5 ATP6V1HAPOBEC3G-3 AP1S2 HLA class I histocompatibility antigen, A-2 alpha chain UBB(77-152) Ran-GDPAP2B1 LCKNUPL1-2 UBC(457-532) VPR SEH1L-2 UBC(229-304) PSMA4 NUP88 NUP54 Tat:P-TEFb(CyclinT1:Cdk9) complexPOM121C NUP43 PSMD4 HMGA1 myristoylated nefAP1S3 NUP205 minus sssDNA containing deaminated C residues p51 (RT) UBC(77-152) PSMA3 CD247-1PSMD13 AP2M1 REV (P04618) protein UBC(1-76) NUP188 AP2A1 CCNT1AP1B1 HIV-1 RNA template PSIP1 GDP Rev-multimer MA (P04591) protein VIF (P69723) protein PSMD5 CD8B TPR myristoylated nef KPNA1REV (P04618) protein POM121C SLC25A6 PSMA5 RBX1 CD4 NUP50 PSMC4 Rev-multimer Importin-beta:RanGTP complexNUP160 PSMB7 XPO1 KPNB1 AP-2 ComplexLipid RaftVIF (P69723) protein AP2M1 BANF1 NUP93 NUP188 GTP myristoylated nef PSMD3 BTRC NUP107 NUP155 REV (P04618) protein CD28 VIF (P69723) protein NUP107 NUP54 myristoylated nef REV (P04618) protein SLC25A5 PPIA MA (P04585) protein PSME3 NUP62 APOBEC3G PSMF1 NDC1 UBC(533-608) CUL5 NUP35 UBC(609-684) AP2B1 XPO1CDK9RCC1PSMA8 NUP62 NUP98-3 CD247-1 PSMB7 CD4 APOBEC3G REV (P04618) proteinNUP133 VPR (P69726) protein ELOC NUP205 NUP88 tRNA-Lysine3 PSMB9 RBX1 DOCK2 NUP98-4 RBX1 HIV-1 mRNA multiubiquitinatedCD4:Vpu:beta-TrCP_1:Skp1 complexUBA52(1-76) NUP133 ADP/ATP translocasemonomer (generic)HCK ANT1:Vpr complexNPM1 AP2B1 NUPL2 NUP93 NUP43 UBB(1-76) PACS1 NUPL2 Nup45 VPR DOCK2:ELMO1:RAC1:NefComplexPSMA2 NUP43 UBB(1-76) PSMD12 viral plus strand DNA with sticky 3' end VIF (P69723) proteinVPU (P05919) NUP43 CD4 AP1G1 CD4:Vpu:beta-TrCP_1:Skp1 complexGTP UBC(457-532) PSMD7 NUP188 AP2S1 RAE1 PSMB10 ELOC PiMA (P04591) protein NUP214 SHFM1 NUP155 NUP160 AP1B1 IN (Integrase) (P04585) protein PSMD14 VIF (P69723) protein NUP93 RAE1 NUP98-3 APOBEC3G UBC(381-456) CUL5 Lipid Raft AAAS UBB(77-152) GDPAP2A1 POM121C NUP98-3 Nef:class I MHCcomplexminus sssDNA REV (P04618) protein CD28myristoylated nef NUP133 AP2B1 AP1M1 H2OPPIA NDC1 UbAPOBEC3G-3 FYNVIF (P69723) protein NUP214 CD8B AP1S2 viral plus strand DNA with sticky 3' end CD4RAN VIF (P69723) protein SKP1 VIF (P69723) protein VPU (P05919) HIV-1 RNA template NUP85 MA (P04585) protein myristoylated nef NUP37 PSMB5 VPU (P05919)PSMD1 InternalizedCD8:Nef:Clathrin-Coated Pit Adapter Protein:v-ATPasePSME1 ATP6V1Hviral minus strand DNA with sticky 3' end PSMA6 MA (P04591) protein POM121 MA (P04591) protein nucleoporin-associated Rev:Importin-beta:B23 complexBANF1 XPO1RAC1RPS27A(1-76) VPU (P05919) protein AP2B1 CD4 REV (P04618) protein viral plus strand DNA with sticky 3' end NUP160 p51 (RT) REV (P04618) protein SEH1L-2 minus sssDNA CD4NUPL1-2 LCK HIV-1 mRNA p6 (P04591) protein APOBEC3G NUP37 Rev-multimer CD4:Nef ComplexPSME3 VPRNup45 B2M(21-119) viral minus strand DNA with sticky 3' end PSMB4 VIF (P69723) protein Rev-multimer UBC(229-304) CD4:Lck ComplexAP-2 ComplexELOB Rev:Importin-beta:B23KPNB1 p6 (P04585) protein AP1M2 Revmultimer-boundHIV-1mRNA:Crm1:Ran:GTP:NPCNUP54 AP1S3 Ran:GTPNPM1 PACS1RAE1 RPS27A(1-76) RTC with minussssDNA:tRNAprimer:RNA templateUBC(381-456) NUP210 NUP214 PSMC2 Reverse transcriptase/ribonuclease H AP1S2 XPO1 CD4 MA (P04585) protein Vif:APOBEC3G complexPOM121 PSMB3 viral plus strand DNA with sticky 3' end NUP133 RAN SLC25A6 RAN Importin beta-1:Revmultimer complexVPRPSMB2 HCKCD4 NUP205 PSME4 UBA52(1-76) PSMA2 UBA52(1-76) AP2M1 AP2S1 SKP1 Nef:CD28 ComplexVPU (P05919) protein APOBEC3G-3 UBC(533-608) Rev-multimer NUP35 AP1S1 VIF (P69723) protein multi-ubiquitinatedAPOBEC3G:Vif:Cul5:SCF complexAAAS NPM1REV (P04618) protein ATP6V1H RAN GTP KPNB1 NUPL1-2 Vpr:importin-alphacomplexPSMC2 SLC25A4 CD4:Nef:AP-2Complex:v-ATPaseComplexTPR PSMD2 POM121 AP2A1 NUP35 ELOB UBC(305-380) AP-1 ComplexB2M(21-119) Ran-GTPGDP p6 (P04585) protein PSMC3 BTRCAP2A2(1-939) PSMD10 Nef:T cell Receptorzeta:Lipid Raft:Pak 2 Complexp6 (P04585) protein ARF1PSME1 InternalizedCD4:Nef:Clathrin-Coated Pit Adapter Protein:v-ATPaseRAN Hck-1:NefMA (P04585) protein UBC(457-532) NUP155 RBX1 PSMA7 GTP Rev-multimer NUPL1-2 KPNB1 SEH1L-2 UBB(1-76) PSMC5 UBB(153-228) REV (P04618) protein AP2A2(1-939) CD28:Nef:Clathrin-coated Pit Adapter Proteinmyristoylated nef HIV-1 mRNAUBC(229-304) APOBEC3G-3 AP1S1 APOBEC3G-3 myristoylated nef ELOC PSMD11 CD8B VPU (P05919) GTP CD8:Nef ComplexAPOBEC3G:RTC withminus sssDNA:tRNAprimer:RNA templateHLA class I histocompatibility antigen, A-2 alpha chain AP2M1 AP1M1 Cul5-SCF complexB2M(21-119) REV (P04618) protein RAE1 Rev multimer-boundHIV-1 mRNA:CRM1complexNUPL2 PSMC1 NUP210 PSMD9 26S proteasomeAP2M1 RAC1 NUP153 PSMA1 myristoylated nef ARF1 REV (P04618) protein RAN BANF1 SLC25A4 AP1S3 UBC(1-76) GTP UBC(153-228) AP2S1 NUP98-5 RPS27A(1-76) NUP98-3 HIV-1 RNA template PSMA1 IN (Integrase) (P04585) protein PSMD14 viral minus strand DNA with sticky 3' end PSMA8 NUP93 PSMB8 HIV-1 mRNA NUP153 PSMB10 RanBP1:Ran-GTP:CRM1:Rev-bound mRNA complexHMGA1 NUP85 POM121 UBC(305-380) MA (P04591) protein CUL5 APOBEC3G-3 Tat (P04608)GTP UBC(381-456) PSMB3 PSMD7 Ran GTPase:GDPAP2A1 NUP50 p6 (P04585) protein MA (P04591) protein ATP6V1H class I MHC complexPSMD8 AP1G1 PSMC5 AP2M1 viral minus strand DNA with sticky 3' end RAN AP2S1 PSMB8 GTP MA (P04585) protein NUP50 BTRC CD28:Nef:Clathrin-coated Pit Adapter Protein Complexp6 (P04585) protein AP-2 ComplexKPNB1 p6 (P04591) protein REV (P04618) protein VPU (P05919) protein RAN AAAS NUP107 VPU (P05919) protein REV (P04618) proteinAP2A2(1-939) APOBEC3G Reverse transcriptase/ribonuclease H AP2A2(1-939) ELOC PSMD5 APOBEC3G-3 PSMD12 myristoylated nef AP1B1 RANBP1TPR Rev:importin-beta:B23:Ran-GTP complexUBC(153-228) ELMO1 REV (P04618) protein NDC1 AP2A2(1-939) UBC(609-684) APOBEC3G:RTC withdeaminated minussssDNA:tRNAprimer:RNA templatePSMD6 PSME4 GTPCD28 AAAS Vif:Cul5:SCF complexVIF (P69723) protein HMGA1 NUP85 Reverse transcriptase/ribonuclease H Vpu:beta-TrCP1:Skp1complexPSMC1 NUP98-4 PSMD13 UBC(1-76) 464517, 2017, 20174645463, 4, 34, 3745464541, 4541, 4517


Description

Like all viruses, HIV-1 must co-opt the host cell macromolecular transport and processing machinery. HIV-1 Vpr and Rev proteins play key roles in this co-optation. Efficient HIV-1 replication likewise requires evasion of APOBEC3G-mediated mutagenesis of reverse transcripts, a process mediated by the viral Vif protein. View original pathway at:Reactome.

Comments

Reactome-Converter 
Pathway is converted from Reactome ID: 162909
Reactome-version 
Reactome version: 65

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Bibliography

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History

View all...
CompareRevisionActionTimeUserComment
114683view16:15, 25 January 2021ReactomeTeamReactome version 75
113130view11:19, 2 November 2020ReactomeTeamReactome version 74
112362view15:29, 9 October 2020ReactomeTeamReactome version 73
101263view11:15, 1 November 2018ReactomeTeamreactome version 66
100801view20:43, 31 October 2018ReactomeTeamreactome version 65
100343view19:21, 31 October 2018ReactomeTeamreactome version 64
99888view16:03, 31 October 2018ReactomeTeamreactome version 63
99445view14:37, 31 October 2018ReactomeTeamreactome version 62 (2nd attempt)
96358view20:11, 9 March 2018AndrewlmasonHIV down regulated
93974view13:49, 16 August 2017ReactomeTeamreactome version 61
93575view11:27, 9 August 2017ReactomeTeamreactome version 61
87139view18:51, 18 July 2016MkutmonOntology Term : 'infectious disease pathway' added !
86678view09:24, 11 July 2016ReactomeTeamreactome version 56
83092view09:57, 18 November 2015ReactomeTeamVersion54
81413view12:56, 21 August 2015ReactomeTeamVersion53
76883view08:15, 17 July 2014ReactomeTeamFixed remaining interactions
76588view11:56, 16 July 2014ReactomeTeamFixed remaining interactions
75920view09:57, 11 June 2014ReactomeTeamRe-fixing comment source
75621view10:48, 10 June 2014ReactomeTeamReactome 48 Update
74976view13:49, 8 May 2014AnweshaFixing comment source for displaying WikiPathways description
74620view08:40, 30 April 2014ReactomeTeamNew pathway

External references

DataNodes

View all...
NameTypeDatabase referenceComment
26S proteasomeComplexR-HSA-68819 (Reactome)
AAAS ProteinQ9NRG9 (Uniprot-TrEMBL)
ADP/ATP translocase monomer (generic)ComplexR-HSA-164858 (Reactome)
ANT1:Vpr complexComplexR-HSA-180906 (Reactome)
AP-1 ComplexComplexR-HSA-167717 (Reactome)
AP-2 ComplexComplexR-HSA-167712 (Reactome)
AP1B1 ProteinQ10567 (Uniprot-TrEMBL)
AP1G1 ProteinO43747 (Uniprot-TrEMBL)
AP1M1 ProteinQ9BXS5 (Uniprot-TrEMBL)
AP1M2 ProteinQ9Y6Q5 (Uniprot-TrEMBL)
AP1S1 ProteinP61966 (Uniprot-TrEMBL)
AP1S2 ProteinP56377 (Uniprot-TrEMBL)
AP1S3 ProteinQ96PC3 (Uniprot-TrEMBL)
AP2A1 ProteinO95782 (Uniprot-TrEMBL)
AP2A2(1-939) ProteinO94973 (Uniprot-TrEMBL)
AP2B1 ProteinP63010 (Uniprot-TrEMBL)
AP2M1 ProteinQ96CW1 (Uniprot-TrEMBL)
AP2M1ProteinQ96CW1 (Uniprot-TrEMBL)
AP2S1 ProteinP53680 (Uniprot-TrEMBL)
APOBEC3G ProteinQ9HC16-1 (Uniprot-TrEMBL)
APOBEC3G-3 ProteinQ9HC16-3 (Uniprot-TrEMBL)
APOBEC3G:HIV-1PICComplexR-HSA-180618 (Reactome)
APOBEC3G:RTC with

deaminated minus sssDNA:tRNA

primer:RNA template
ComplexR-HSA-180744 (Reactome)
APOBEC3G:RTC with

minus sssDNA:tRNA

primer:RNA template
ComplexR-HSA-180616 (Reactome)
APOBEC3G:Vif:Cul5:SCF complexComplexR-HSA-180549 (Reactome)
APOBEC3GComplexR-HSA-180578 (Reactome)
ARF1 ProteinP84077 (Uniprot-TrEMBL)
ARF1ProteinP84077 (Uniprot-TrEMBL)
ATP6V1H ProteinQ9UI12 (Uniprot-TrEMBL)
ATP6V1HProteinQ9UI12 (Uniprot-TrEMBL)
Arf1:Nef:endosomal CD4ComplexR-HSA-200867 (Reactome)
B2M(21-119) ProteinP61769 (Uniprot-TrEMBL)
BANF1 ProteinO75531 (Uniprot-TrEMBL)
BTRC ProteinQ9Y297 (Uniprot-TrEMBL)
BTRCProteinQ9Y297 (Uniprot-TrEMBL)
CCNT1 ProteinO60563 (Uniprot-TrEMBL)
CCNT1ProteinO60563 (Uniprot-TrEMBL)
CD247-1 ProteinP20963-1 (Uniprot-TrEMBL)
CD247-1ProteinP20963-1 (Uniprot-TrEMBL)
CD28 ProteinP10747 (Uniprot-TrEMBL)
CD28:Nef:Clathrin-coated Pit Adapter Protein ComplexComplexR-HSA-167636 (Reactome)
CD28:Nef:Clathrin-coated Pit Adapter ProteinComplexR-HSA-167631 (Reactome)
CD28ProteinP10747 (Uniprot-TrEMBL)
CD4 ProteinP01730 (Uniprot-TrEMBL)
CD4:Lck ComplexComplexR-HSA-167529 (Reactome)
CD4:Nef ComplexComplexR-HSA-167596 (Reactome)
CD4:Nef:AP-2

Complex:v-ATPase

Complex
ComplexR-HSA-167544 (Reactome)
CD4:Vpu complexComplexR-HSA-180601 (Reactome)
CD4:Vpu:beta-TrCP_1:Skp1 complexComplexR-HSA-180592 (Reactome)
CD4:Vpu:beta-TrCP_1ComplexR-HSA-180532 (Reactome)
CD4ProteinP01730 (Uniprot-TrEMBL)
CD8:Nef ComplexComplexR-HSA-182194 (Reactome)
CD8:Nef:AP-2

Complex:v-ATPase

Complex
ComplexR-HSA-182158 (Reactome)
CD8B ProteinP10966 (Uniprot-TrEMBL)
CDK9 ProteinP50750 (Uniprot-TrEMBL)
CDK9ProteinP50750 (Uniprot-TrEMBL)
CUL5 ProteinQ93034 (Uniprot-TrEMBL)
Cul5-SCF complexComplexR-HSA-180596 (Reactome)
DOCK2 ProteinQ92608 (Uniprot-TrEMBL)
DOCK2:ELMO1:RAC1:Nef ComplexComplexR-HSA-200937 (Reactome)
DOCK2ProteinQ92608 (Uniprot-TrEMBL)
ELMO1 ProteinQ92556 (Uniprot-TrEMBL)
ELMO1ProteinQ92556 (Uniprot-TrEMBL)
ELOB ProteinQ15370 (Uniprot-TrEMBL)
ELOC ProteinQ15369 (Uniprot-TrEMBL)
FYN ProteinP06241 (Uniprot-TrEMBL)
FYNProteinP06241 (Uniprot-TrEMBL)
Fyn:Nef ComplexComplexR-HSA-200911 (Reactome)
GDP MetaboliteCHEBI:17552 (ChEBI)
GDPMetaboliteCHEBI:17552 (ChEBI)
GTP MetaboliteCHEBI:15996 (ChEBI)
GTPMetaboliteCHEBI:15996 (ChEBI)
H2OMetaboliteCHEBI:15377 (ChEBI)
HCK ProteinP08631 (Uniprot-TrEMBL)
HCKProteinP08631 (Uniprot-TrEMBL)
HIV-1 RNA template ProteinAF033819 (EMBL)
HIV-1 mRNA ProteinAF033819 (EMBL)
HIV-1 mRNARnaAF033819 (EMBL)
HIV-1 unspliced RNARnaAF033819 (EMBL)
HLA class I histocompatibility antigen, A-2 alpha chain ProteinP01892 (Uniprot-TrEMBL)
HMGA1 ProteinP17096 (Uniprot-TrEMBL)
Hck-1:NefComplexR-HSA-200872 (Reactome)
IN (Integrase) (P04585) protein ProteinP04585 (Uniprot-TrEMBL)
IN bound to sticky

3' ends of viral

DNA in PIC
ComplexR-HSA-177526 (Reactome)
Importin beta-1:Rev multimer complexComplexR-HSA-180707 (Reactome)
Importin-beta:Ran GTP complexComplexR-HSA-180719 (Reactome)
Internalized CD4:Nef:Clathrin-Coated Pit Adapter Protein:v-ATPaseComplexR-HSA-167554 (Reactome)
Internalized CD8:Nef:Clathrin-Coated Pit Adapter Protein:v-ATPaseComplexR-HSA-182230 (Reactome)
KPNA1 ProteinP52294 (Uniprot-TrEMBL)
KPNA1ProteinP52294 (Uniprot-TrEMBL)
KPNB1 ProteinQ14974 (Uniprot-TrEMBL)
KPNB1ProteinQ14974 (Uniprot-TrEMBL)
LCK ProteinP06239 (Uniprot-TrEMBL)
LCKProteinP06239 (Uniprot-TrEMBL)
Lck:NefComplexR-HSA-200922 (Reactome)
Lipid Raft R-ALL-167540 (Reactome)
Lipid RaftR-ALL-167540 (Reactome)
MA (P04585) protein ProteinP04585 (Uniprot-TrEMBL)
MA (P04591) protein ProteinP04591 (Uniprot-TrEMBL)
NDC1 ProteinQ9BTX1 (Uniprot-TrEMBL)
NH3MetaboliteCHEBI:16134 (ChEBI)
NPM1 ProteinP06748 (Uniprot-TrEMBL)
NPM1ProteinP06748 (Uniprot-TrEMBL)
NUP107 ProteinP57740 (Uniprot-TrEMBL)
NUP133 ProteinQ8WUM0 (Uniprot-TrEMBL)
NUP153 ProteinP49790 (Uniprot-TrEMBL)
NUP155 ProteinO75694 (Uniprot-TrEMBL)
NUP160 ProteinQ12769 (Uniprot-TrEMBL)
NUP188 ProteinQ5SRE5 (Uniprot-TrEMBL)
NUP205 ProteinQ92621 (Uniprot-TrEMBL)
NUP210 ProteinQ8TEM1 (Uniprot-TrEMBL)
NUP214 ProteinP35658 (Uniprot-TrEMBL)
NUP35 ProteinQ8NFH5 (Uniprot-TrEMBL)
NUP37 ProteinQ8NFH4 (Uniprot-TrEMBL)
NUP43 ProteinQ8NFH3 (Uniprot-TrEMBL)
NUP50 ProteinQ9UKX7 (Uniprot-TrEMBL)
NUP54 ProteinQ7Z3B4 (Uniprot-TrEMBL)
NUP62 ProteinP37198 (Uniprot-TrEMBL)
NUP85 ProteinQ9BW27 (Uniprot-TrEMBL)
NUP88 ProteinQ99567 (Uniprot-TrEMBL)
NUP93 ProteinQ8N1F7 (Uniprot-TrEMBL)
NUP98-3 ProteinP52948-3 (Uniprot-TrEMBL)
NUP98-4 ProteinP52948-4 (Uniprot-TrEMBL)
NUP98-5 ProteinP52948-5 (Uniprot-TrEMBL)
NUPL1-2 ProteinQ9BVL2-1 (Uniprot-TrEMBL)
NUPL2 ProteinO15504 (Uniprot-TrEMBL)
Nef:CD28 ComplexComplexR-HSA-167629 (Reactome)
Nef:T cell Receptor

zeta:Lipid Raft:

Pak 2 Complex
ComplexR-HSA-167576 (Reactome)
Nef:class I MHC

complex:AP-1:PACS-1

Complex
ComplexR-HSA-182254 (Reactome)
Nef:class I MHC

complex:Ap-1:PACS-1

Complex
ComplexR-HSA-182373 (Reactome)
Nef:class I MHC complexComplexR-HSA-182256 (Reactome)
Nuclear Pore Complex (NPC)ComplexR-HSA-157689 (Reactome)
Nup45 ProteinQ9BVL2-2 (Uniprot-TrEMBL)
P-TEFb(Cyclin T1:Cdk9) complexComplexR-HSA-167183 (Reactome)
PACS1 ProteinQ6VY07 (Uniprot-TrEMBL)
PACS1ProteinQ6VY07 (Uniprot-TrEMBL)
PAK2(1-524) ProteinQ13177 (Uniprot-TrEMBL)
PAK2(1-524)ProteinQ13177 (Uniprot-TrEMBL)
PIC anchored to the NPCComplexR-HSA-180610 (Reactome)
POM121 ProteinQ96HA1 (Uniprot-TrEMBL)
POM121C ProteinA8CG34 (Uniprot-TrEMBL)
PPIA ProteinP62937 (Uniprot-TrEMBL)
PSIP1 ProteinO75475 (Uniprot-TrEMBL)
PSMA1 ProteinP25786 (Uniprot-TrEMBL)
PSMA2 ProteinP25787 (Uniprot-TrEMBL)
PSMA3 ProteinP25788 (Uniprot-TrEMBL)
PSMA4 ProteinP25789 (Uniprot-TrEMBL)
PSMA5 ProteinP28066 (Uniprot-TrEMBL)
PSMA6 ProteinP60900 (Uniprot-TrEMBL)
PSMA7 ProteinO14818 (Uniprot-TrEMBL)
PSMA8 ProteinQ8TAA3 (Uniprot-TrEMBL)
PSMB1 ProteinP20618 (Uniprot-TrEMBL)
PSMB10 ProteinP40306 (Uniprot-TrEMBL)
PSMB11 ProteinA5LHX3 (Uniprot-TrEMBL)
PSMB2 ProteinP49721 (Uniprot-TrEMBL)
PSMB3 ProteinP49720 (Uniprot-TrEMBL)
PSMB4 ProteinP28070 (Uniprot-TrEMBL)
PSMB5 ProteinP28074 (Uniprot-TrEMBL)
PSMB6 ProteinP28072 (Uniprot-TrEMBL)
PSMB7 ProteinQ99436 (Uniprot-TrEMBL)
PSMB8 ProteinP28062 (Uniprot-TrEMBL)
PSMB9 ProteinP28065 (Uniprot-TrEMBL)
PSMC1 ProteinP62191 (Uniprot-TrEMBL)
PSMC2 ProteinP35998 (Uniprot-TrEMBL)
PSMC3 ProteinP17980 (Uniprot-TrEMBL)
PSMC4 ProteinP43686 (Uniprot-TrEMBL)
PSMC5 ProteinP62195 (Uniprot-TrEMBL)
PSMC6 ProteinP62333 (Uniprot-TrEMBL)
PSMD1 ProteinQ99460 (Uniprot-TrEMBL)
PSMD10 ProteinO75832 (Uniprot-TrEMBL)
PSMD11 ProteinO00231 (Uniprot-TrEMBL)
PSMD12 ProteinO00232 (Uniprot-TrEMBL)
PSMD13 ProteinQ9UNM6 (Uniprot-TrEMBL)
PSMD14 ProteinO00487 (Uniprot-TrEMBL)
PSMD2 ProteinQ13200 (Uniprot-TrEMBL)
PSMD3 ProteinO43242 (Uniprot-TrEMBL)
PSMD4 ProteinP55036 (Uniprot-TrEMBL)
PSMD5 ProteinQ16401 (Uniprot-TrEMBL)
PSMD6 ProteinQ15008 (Uniprot-TrEMBL)
PSMD7 ProteinP51665 (Uniprot-TrEMBL)
PSMD8 ProteinP48556 (Uniprot-TrEMBL)
PSMD9 ProteinO00233 (Uniprot-TrEMBL)
PSME1 ProteinQ06323 (Uniprot-TrEMBL)
PSME2 ProteinQ9UL46 (Uniprot-TrEMBL)
PSME3 ProteinP61289 (Uniprot-TrEMBL)
PSME4 ProteinQ14997 (Uniprot-TrEMBL)
PSMF1 ProteinQ92530 (Uniprot-TrEMBL)
PiMetaboliteCHEBI:18367 (ChEBI)
RAC1 ProteinP63000 (Uniprot-TrEMBL)
RAC1ProteinP63000 (Uniprot-TrEMBL)
RAE1 ProteinP78406 (Uniprot-TrEMBL)
RAN ProteinP62826 (Uniprot-TrEMBL)
RANBP1 ProteinP43487 (Uniprot-TrEMBL)
RANBP1ProteinP43487 (Uniprot-TrEMBL)
RANBP2 ProteinP49792 (Uniprot-TrEMBL)
RANGAP1ProteinP46060 (Uniprot-TrEMBL)
RBX1 ProteinP62877 (Uniprot-TrEMBL)
RCC1ProteinP18754 (Uniprot-TrEMBL)
REV (P04618) protein ProteinP04618 (Uniprot-TrEMBL)
REV (P04618) proteinProteinP04618 (Uniprot-TrEMBL)
RPS27A(1-76) ProteinP62979 (Uniprot-TrEMBL)
RTC with minus

sssDNA:tRNA

primer:RNA template
ComplexR-HSA-173774 (Reactome)
Ran GTPase:GDPComplexR-HSA-165549 (Reactome)
Ran-GDPComplexR-HSA-180701 (Reactome)
Ran-GTPComplexR-HSA-180738 (Reactome)
Ran:GTPComplexR-HSA-180686 (Reactome)
RanBP1:Ran-GTP:CRM1:Rev-bound mRNA complexComplexR-HSA-180718 (Reactome)
Rev

multimer-bound HIV-1

mRNA:Crm1:Ran:GTP:NPC
ComplexR-HSA-165531 (Reactome)
Rev multimer-bound

HIV-1

mRNA:Crm1:Ran:GTP
ComplexR-HSA-165537 (Reactome)
Rev multimer-bound

HIV-1

mRNA:Crm1:Ran:GTP
ComplexR-HSA-165552 (Reactome)
Rev multimer-bound

HIV-1 mRNA:CRM1

complex
ComplexR-HSA-180873 (Reactome)
Rev multimer-bound HIV-1 mRNAComplexR-HIV-165532 (Reactome)
Rev-bound HIV-1 mRNAComplexR-HIV-165535 (Reactome)
Rev-multimer R-HIV-165542 (Reactome)
Rev-multimer R-HIV-165543 (Reactome)
Rev-multimerR-HIV-165542 (Reactome)
Rev-multimerR-HIV-165543 (Reactome)
Rev:Importin-beta:B23ComplexR-HSA-180711 (Reactome)
Rev:Importin-beta:NPM1ComplexR-HSA-180724 (Reactome)
Rev:importin-beta:B23:Ran-GTP complexComplexR-HSA-180712 (Reactome)
Reverse transcriptase/ribonuclease H ProteinP04585 (Uniprot-TrEMBL)
SEH1L-2 ProteinQ96EE3-2 (Uniprot-TrEMBL)
SHFM1 ProteinP60896 (Uniprot-TrEMBL)
SKP1 ProteinP63208 (Uniprot-TrEMBL)
SKP1ProteinP63208 (Uniprot-TrEMBL)
SLC25A4 ProteinP12235 (Uniprot-TrEMBL)
SLC25A5 ProteinP05141 (Uniprot-TrEMBL)
SLC25A6 ProteinP12236 (Uniprot-TrEMBL)
TPR ProteinP12270 (Uniprot-TrEMBL)
Tat (P04608) ProteinP04608 (Uniprot-TrEMBL)
Tat (P04608)ProteinP04608 (Uniprot-TrEMBL)
Tat:P-TEFb(Cyclin T1:Cdk9) complexComplexR-HSA-167237 (Reactome)
UBA52(1-76) ProteinP62987 (Uniprot-TrEMBL)
UBB(1-76) ProteinP0CG47 (Uniprot-TrEMBL)
UBB(153-228) ProteinP0CG47 (Uniprot-TrEMBL)
UBB(77-152) ProteinP0CG47 (Uniprot-TrEMBL)
UBC(1-76) ProteinP0CG48 (Uniprot-TrEMBL)
UBC(153-228) ProteinP0CG48 (Uniprot-TrEMBL)
UBC(229-304) ProteinP0CG48 (Uniprot-TrEMBL)
UBC(305-380) ProteinP0CG48 (Uniprot-TrEMBL)
UBC(381-456) ProteinP0CG48 (Uniprot-TrEMBL)
UBC(457-532) ProteinP0CG48 (Uniprot-TrEMBL)
UBC(533-608) ProteinP0CG48 (Uniprot-TrEMBL)
UBC(609-684) ProteinP0CG48 (Uniprot-TrEMBL)
UBC(77-152) ProteinP0CG48 (Uniprot-TrEMBL)
UbComplexR-HSA-113595 (Reactome)
VIF (P69723) protein ProteinP69723 (Uniprot-TrEMBL)
VIF (P69723) proteinProteinP69723 (Uniprot-TrEMBL)
VPR (P69726) protein ProteinP69726 (Uniprot-TrEMBL)
VPR ProteinP69726 (Uniprot-TrEMBL)
VPRProteinP69726 (Uniprot-TrEMBL)
VPU (P05919) ProteinP05919 (Uniprot-TrEMBL)
VPU (P05919) protein ProteinP05919 (Uniprot-TrEMBL)
VPU (P05919)ProteinP05919 (Uniprot-TrEMBL)
Vif:APOBEC3G complexComplexR-HSA-180543 (Reactome)
Vif:Cul5:SCF complexComplexR-HSA-180539 (Reactome)
Vpr:importin-alpha complexComplexR-HSA-180623 (Reactome)
Vpu:beta-TrCP1:Skp1 complexComplexR-HSA-180567 (Reactome)
XPO1 ProteinO14980 (Uniprot-TrEMBL)
XPO1ProteinO14980 (Uniprot-TrEMBL)
class I MHC complexComplexR-HSA-182275 (Reactome)
minus sssDNA R-HIV-173823 (Reactome)
minus sssDNA containing deaminated C residues R-HIV-180629 (Reactome)
multi-ubiquitinated APOBEC3G:Vif:Cul5:SCF complexComplexR-HSA-180577 (Reactome)
multiubiquitinated CD4:Vpu:beta-TrCP_1:Skp1 complexComplexR-HSA-180530 (Reactome)
myristoylated nef ProteinP04601 (Uniprot-TrEMBL)
myristoylated nefProteinP04601 (Uniprot-TrEMBL)
nucleoporin-associated Rev:Importin-beta:B23 complexComplexR-HSA-180720 (Reactome)
p51 (RT) ProteinP04585 (Uniprot-TrEMBL)
p6 (P04585) protein ProteinP04585 (Uniprot-TrEMBL)
p6 (P04591) protein ProteinP04591 (Uniprot-TrEMBL)
tRNA-Lysine3 R-HSA-173782 (Reactome)
viral minus strand DNA with sticky 3' end R-HIV-177533 (Reactome)
viral plus strand DNA with sticky 3' end R-HIV-177540 (Reactome)

Annotated Interactions

View all...
SourceTargetTypeDatabase referenceComment
26S proteasomemim-catalysisR-HSA-180573 (Reactome)
26S proteasomemim-catalysisR-HSA-180603 (Reactome)
ADP/ATP translocase monomer (generic)R-HSA-180905 (Reactome)
ANT1:Vpr complexArrowR-HSA-180905 (Reactome)
AP-1 ComplexArrowR-HSA-182263 (Reactome)
AP-1 ComplexR-HSA-182279 (Reactome)
AP-2 ComplexArrowR-HSA-167601 (Reactome)
AP-2 ComplexArrowR-HSA-182171 (Reactome)
AP-2 ComplexR-HSA-167537 (Reactome)
AP-2 ComplexR-HSA-182186 (Reactome)
AP2M1R-HSA-167633 (Reactome)
APOBEC3G:HIV-1PICArrowR-HSA-180630 (Reactome)
APOBEC3G:RTC with

deaminated minus sssDNA:tRNA

primer:RNA template
ArrowR-HSA-180632 (Reactome)
APOBEC3G:RTC with

minus sssDNA:tRNA

primer:RNA template
ArrowR-HSA-180634 (Reactome)
APOBEC3G:RTC with

minus sssDNA:tRNA

primer:RNA template
R-HSA-180632 (Reactome)
APOBEC3G:Vif:Cul5:SCF complexArrowR-HSA-180555 (Reactome)
APOBEC3G:Vif:Cul5:SCF complexR-HSA-180540 (Reactome)
APOBEC3G:Vif:Cul5:SCF complexmim-catalysisR-HSA-180540 (Reactome)
APOBEC3GR-HSA-180602 (Reactome)
APOBEC3GR-HSA-180630 (Reactome)
APOBEC3GR-HSA-180634 (Reactome)
APOBEC3Gmim-catalysisR-HSA-180632 (Reactome)
ARF1R-HSA-200879 (Reactome)
ATP6V1HArrowR-HSA-167601 (Reactome)
ATP6V1HArrowR-HSA-182171 (Reactome)
ATP6V1HR-HSA-167537 (Reactome)
ATP6V1HR-HSA-182186 (Reactome)
Arf1:Nef:endosomal CD4ArrowR-HSA-200879 (Reactome)
BTRCR-HSA-180591 (Reactome)
CCNT1R-HSA-167235 (Reactome)
CD247-1R-HSA-164943 (Reactome)
CD28:Nef:Clathrin-coated Pit Adapter Protein ComplexArrowR-HSA-167633 (Reactome)
CD28:Nef:Clathrin-coated Pit Adapter Protein ComplexR-HSA-167637 (Reactome)
CD28:Nef:Clathrin-coated Pit Adapter ProteinArrowR-HSA-167637 (Reactome)
CD28R-HSA-167630 (Reactome)
CD4:Lck ComplexR-HSA-167566 (Reactome)
CD4:Nef ComplexArrowR-HSA-167566 (Reactome)
CD4:Nef ComplexR-HSA-167537 (Reactome)
CD4:Nef:AP-2

Complex:v-ATPase

Complex
ArrowR-HSA-167537 (Reactome)
CD4:Nef:AP-2

Complex:v-ATPase

Complex
R-HSA-167597 (Reactome)
CD4:Vpu complexArrowR-HSA-180606 (Reactome)
CD4:Vpu complexR-HSA-180591 (Reactome)
CD4:Vpu:beta-TrCP_1:Skp1 complexArrowR-HSA-180599 (Reactome)
CD4:Vpu:beta-TrCP_1:Skp1 complexR-HSA-180597 (Reactome)
CD4:Vpu:beta-TrCP_1:Skp1 complexmim-catalysisR-HSA-180597 (Reactome)
CD4:Vpu:beta-TrCP_1ArrowR-HSA-180591 (Reactome)
CD4:Vpu:beta-TrCP_1R-HSA-180599 (Reactome)
CD4R-HSA-180606 (Reactome)
CD4R-HSA-200879 (Reactome)
CD8:Nef ComplexR-HSA-182186 (Reactome)
CD8:Nef:AP-2

Complex:v-ATPase

Complex
ArrowR-HSA-182186 (Reactome)
CD8:Nef:AP-2

Complex:v-ATPase

Complex
R-HSA-182198 (Reactome)
CDK9R-HSA-167235 (Reactome)
Cul5-SCF complexR-HSA-180555 (Reactome)
DOCK2:ELMO1:RAC1:Nef ComplexArrowR-HSA-200952 (Reactome)
DOCK2R-HSA-200952 (Reactome)
ELMO1R-HSA-200952 (Reactome)
FYNR-HSA-200908 (Reactome)
Fyn:Nef ComplexArrowR-HSA-200908 (Reactome)
GDPArrowR-HSA-180687 (Reactome)
GTPR-HSA-180687 (Reactome)
H2OR-HSA-180632 (Reactome)
HCKR-HSA-200858 (Reactome)
HIV-1 mRNAR-HSA-165027 (Reactome)
HIV-1 unspliced RNAArrowR-HSA-165028 (Reactome)
Hck-1:NefArrowR-HSA-200858 (Reactome)
IN bound to sticky

3' ends of viral

DNA in PIC
R-HSA-180622 (Reactome)
IN bound to sticky

3' ends of viral

DNA in PIC
R-HSA-180627 (Reactome)
IN bound to sticky

3' ends of viral

DNA in PIC
R-HSA-180630 (Reactome)
Importin beta-1:Rev multimer complexArrowR-HSA-180709 (Reactome)
Importin beta-1:Rev multimer complexR-HSA-180725 (Reactome)
Importin-beta:Ran GTP complexArrowR-HSA-180736 (Reactome)
Internalized CD4:Nef:Clathrin-Coated Pit Adapter Protein:v-ATPaseArrowR-HSA-167597 (Reactome)
Internalized CD4:Nef:Clathrin-Coated Pit Adapter Protein:v-ATPaseR-HSA-167601 (Reactome)
Internalized CD8:Nef:Clathrin-Coated Pit Adapter Protein:v-ATPaseArrowR-HSA-182198 (Reactome)
Internalized CD8:Nef:Clathrin-Coated Pit Adapter Protein:v-ATPaseR-HSA-182171 (Reactome)
KPNA1R-HSA-180627 (Reactome)
KPNB1R-HSA-180709 (Reactome)
LCKArrowR-HSA-167566 (Reactome)
LCKR-HSA-200954 (Reactome)
Lck:NefArrowR-HSA-200954 (Reactome)
Lipid RaftR-HSA-164943 (Reactome)
NH3ArrowR-HSA-180632 (Reactome)
NPM1ArrowR-HSA-180736 (Reactome)
NPM1R-HSA-180725 (Reactome)
Nef:CD28 ComplexArrowR-HSA-167630 (Reactome)
Nef:CD28 ComplexR-HSA-167633 (Reactome)
Nef:T cell Receptor

zeta:Lipid Raft:

Pak 2 Complex
ArrowR-HSA-164943 (Reactome)
Nef:class I MHC

complex:AP-1:PACS-1

Complex
ArrowR-HSA-182286 (Reactome)
Nef:class I MHC

complex:AP-1:PACS-1

Complex
R-HSA-182263 (Reactome)
Nef:class I MHC

complex:Ap-1:PACS-1

Complex
ArrowR-HSA-182279 (Reactome)
Nef:class I MHC

complex:Ap-1:PACS-1

Complex
R-HSA-182286 (Reactome)
Nef:class I MHC complexArrowR-HSA-182243 (Reactome)
Nef:class I MHC complexR-HSA-182279 (Reactome)
Nuclear Pore Complex (NPC)ArrowR-HSA-165047 (Reactome)
Nuclear Pore Complex (NPC)ArrowR-HSA-180732 (Reactome)
Nuclear Pore Complex (NPC)R-HSA-165043 (Reactome)
Nuclear Pore Complex (NPC)R-HSA-180622 (Reactome)
Nuclear Pore Complex (NPC)R-HSA-180710 (Reactome)
P-TEFb(Cyclin T1:Cdk9) complexArrowR-HSA-167235 (Reactome)
P-TEFb(Cyclin T1:Cdk9) complexR-HSA-167234 (Reactome)
PACS1ArrowR-HSA-182263 (Reactome)
PACS1R-HSA-182279 (Reactome)
PAK2(1-524)R-HSA-164943 (Reactome)
PIC anchored to the NPCArrowR-HSA-180622 (Reactome)
PiArrowR-HSA-165055 (Reactome)
R-HSA-164943 (Reactome) Nef drives the formation of lipid raft complexes.
R-HSA-165027 (Reactome) Nuclear export of the unspliced and partially spliced HIV-1 transcripts requires the association of the HIV-1 Rev protein with a cis-acting RNA sequence known as the Rev Response Element (RRE) located within the env gene. The RRE forms a stem loop structure that associates with an arginine-rich RNA binding motif (ARM) within Rev.
R-HSA-165028 (Reactome) The association of RanBp1 with RanGTP:CRM1:Rev promotes disassembly of the complex and release of the Rev:RNA cargo (Mahboobi et al. 2015).
R-HSA-165033 (Reactome) In order for Rev to function, multiple molecules must bind sequentiallly to the RRE (Malim and Cullen 1991).
R-HSA-165034 (Reactome) RanGTP binds to a preformed Rev-CRM1 complex.
R-HSA-165043 (Reactome) The Rev multimer-bound HIV-1 mRNA:Crm1:Ran:GTP complex associates with the NPC (Askjaer et al. 1998; Daugherty et al. 2010).
R-HSA-165047 (Reactome) Crm1 is a nucleocytoplasmic transport factor that is believed to interact with nucleoporins facilitating docking of the RRE-Rev-CRM1-RanGTP complex to the nuclear pore and the translocation of the complex across the nuclear pore complex (see Cullen 1998) Crm1 has been found in complex with two such nucleoporins, CAN/Nup214 and Nup88 which have been shown to be components of the human nuclear pore complex (Fornerod et al., 1997).
R-HSA-165055 (Reactome) Ran-GAP, a Ran-specific GTPase-activating protein converts Ran-GTP to Ran-GDP, producing a Ran-GTP gradient across the nuclear membrane.
R-HSA-167234 (Reactome) Tat associates with the Cyclin T1 subunit of P-TEFb (Cyclin T1:Cdk9) through a region of cysteine-rich and core sequences referred to as the ARM domain within Tat (Wei et al., 1998; see also Herrmann 1995). This interaction is believed to involve metal ions stabilized by cysteine residues in both proteins (Bieniasz et al., 1998; Garber et al., 1998).
R-HSA-167235 (Reactome) Tat associates with the Cyclin T1 subunit of the cellular kinase complex TAK/P-TEFb and recruits this complex to the TAR sequence in the HIV-1 RNA (Wei et al. 1998). This association between TAT, TAR and TAK/P-TEFb is believed to bring the catalytic subunit of TAK/P-TEFb in close proximity to Pol II where it hyperphosphorylates the CTD of Pol II .
R-HSA-167537 (Reactome) AP-2 is recruited to the newly formed Nef:CD4 complex
R-HSA-167566 (Reactome) Nef disrupts the CD4 Lck complex
R-HSA-167597 (Reactome) The Nef:CD4:AP-2 complex is internalized
R-HSA-167601 (Reactome) CD4 is degraded
R-HSA-167630 (Reactome) Down-regulation of CD28 receptors involves a dileucine-based motif in the second disordered loop of Nef, which connects Nef to adaptor protein (AP) complex, which is a part of cellular endocytosis machinery.
R-HSA-167633 (Reactome) Nef induces accelerated endocytosis of CD28 via clathrin-coated pits.
R-HSA-167637 (Reactome) Once Nef has induced endocytosis of CD28, CD28 containing vesicles are targeted for lysosomal degradation.
R-HSA-180540 (Reactome) APOBEC3G is multi-ubiquitinated by the Vif-Cul5-SCF complex.
R-HSA-180555 (Reactome) The interaction between Vif and the E3 ubiquitin ligase complex (Cullin5, Elongin B and Elongin C, and Rbx1) takes place through direct binding of the SOCS box motif in the viral protein Vif to the host protein Elongin C. Moreover, a conserved HCCH motif in Vif allows binding to Cullin 5.
R-HSA-180573 (Reactome) Ubiquitinated CD4 is then subject to proteasome-mediated degradation.
R-HSA-180591 (Reactome) Vpu links beta-TrCP to CD4 at the ER membrane through interactions with beta-TrCP and the cytoplasmic tail of CD4.
R-HSA-180597 (Reactome) CD4 is ubiquitinated in the CD4:Vpu–h-ßTrCP:Skp1 complex.
R-HSA-180599 (Reactome) The SKP1 component of the SCF complex is recruited to the Vpu:beta-TrCP:CD4 complex.
R-HSA-180602 (Reactome) The HIV-1 Vif protein associates with the DNA editing enzyme APOBEC3G Marin et al) . The binding site has not yet been mapped but emerging evidence suggest that the N-terminal lregion of Vif is essential for APOBEC3G recognition (Tian et al) .
Substitution of a single amino acid in the human APOBEC3G (Asp128Lys) abolishes binding and renders it resistant to HIV-1 Vif (Schrofelbauer et al; Bogerd et al.).

R-HSA-180603 (Reactome) Following multi-ubiquitination by the Vif-Cul5-SCF complex, APOBEC3G is degraded by the 26S proteasome.
R-HSA-180606 (Reactome) Vpu is expressed in the ER and associates with a membrane-proximal region in the cytoplasmic tail of CD4.
R-HSA-180622 (Reactome) Vpr binds to nucleoporins.
R-HSA-180627 (Reactome) Vpr interacts with importin-alpha through alphaH1 and alphaH2. The interaction via alphaH1 is indispensable for the nuclear entry of Vpr (Kamata et al., 2005) .
R-HSA-180630 (Reactome) APOBEC3G is incorporated into virus particles through its association with components of the viral RNA packaging machinery. It binds to the nucleocapsid portion of Gag (NC), a region of the polyprotein that associates with genomic RNA and functions in RNA encapsidation.
R-HSA-180632 (Reactome) During reverse transcription, APOBEC3G-mediated minus-strand deamination occurs within a CC dinucleotide context over the entire length of the HIV-1 genome (Yu et al., 2004).
The polypurine tract is essential for plus strand synthesis and is located at the 3' end of the retroviral genome. HIV-1 encodes an additional central polypurine tract located in the middle of the genome which also serves as primer for plus strand synthesis.
Deamination of the minus strand continues throughout its synthesis with the frequency of deamination events increasing from the 5' to 3' regions. A 400bp region downstream of the central polypurine tract seems to be protected from deamination (Wurtzer et al., 2006)
R-HSA-180634 (Reactome) In the target cell, HIV-1-associated APOBEC3G binds to the HIV-1 reverse transcript minus strand and catalyzes the deamination of cytidines in a specific dinucleotide context (e.g., dCC). In contrast, APOBEC3F and APOBEC3B display a preference for dTC.
R-HSA-180687 (Reactome) Free, nuclear RanGTP is required for export processes out of the nucleus. RCC1 catalyses the conversion of Ran-GDP to Ran-GTP in the nucleus.
R-HSA-180709 (Reactome) The association of Rev with importin-beta is mediated by the Rev nuclear localisation signal.
R-HSA-180710 (Reactome) The Rev-importin beta-B23 complex is recruited to the nuclear pore by an interaction between importin beta and nucleoporin.
R-HSA-180725 (Reactome) B23 may function as a shuttle for the import of HIV Rev from the cytoplasm into the nucleus or nucleolus permitting additional rounds of export of viral RNAs.
R-HSA-180728 (Reactome) Inside the nucleus, Ran-GTP associates with importin-beta.
R-HSA-180732 (Reactome) Following the association of Rev with importin-beta, the Rev:B23:importin-beta complex is imported into the nucleus.
R-HSA-180736 (Reactome) The association of importin-beta with Ran-GTP causes the disassembly of the Rev-importin ß-B23 complex releasing the Rev in the nucleus.
R-HSA-180739 (Reactome) Upon translocation to the cytoplasm, RanBP1 associates with Ran-GTP in the Rev-CRM1-Ran-GTP complex.
R-HSA-180855 (Reactome) Vpr translocates to the mitochondria.
R-HSA-180885 (Reactome) CRM1 associates directly with Rev through the Rev nuclear export signal (NES) domain and acts as the nuclear export receptor for the Rev-RRE ribonucleoprotein complex.
R-HSA-180905 (Reactome) Vpr interacts with the PTPC component ANT1. This interaction induces mitochondrial membrane permeabilization and release of cytochrome c and apoptotic factors.
R-HSA-182171 (Reactome) Once the CD8alphabeta receptor has been internalized via endocytosis, the vesicles are targeted for lysosomal degradation.
R-HSA-182186 (Reactome) The presence of Nef accelerates endocytosis and lysosomal degradation of the transmembrane glycoprotein CD8. Nef facilitates a cascade of protein interactions that ultimately result in the degradation of internalized CD8 protein. The final set of protein interactions that direct Nef to the beta-subunit of the COPI coatomers are at this time unclear.
A number of sites within Nef are proposed to be required for CD8 down-regulation, the myristoylation signal and N-terminal anchor regions, the C-terminal flexible loop, and amino acid positions 57 to 58. Consistent with all reported Nef functions, the myristoylation signal was found to be essential for CD8 down-modulation. The flexible loop contains a dileucine-based internalization motif, which is flanked by acidic clusters and is involved in enhanced internalization of the Nef-CD4 complex.
R-HSA-182198 (Reactome) The CD8alphabeta receptor is internalized via endocytosis.
R-HSA-182243 (Reactome) Nef disrupts the transport of major histocompatibility complex class I molecules by first binding to the the cytoplasmic side of the transmembrane complex.
R-HSA-182263 (Reactome) Once the complex of Nef, major histocompatibility complex class I molecules, PACS-1 and AP-1 arrives at the endosome, the MHC I complex is targeted for degradation.
R-HSA-182279 (Reactome) The complex formed by Nef and the major histocompatibility complex class I molecules creates binding sites for PACS-1 and the AP-1 complex.
R-HSA-182286 (Reactome) The complex of Nef, major histocompatibility complex class I molecules, PACS-1 and AP-1 is transported from the trans-Golgi network to an endosome, where the MHC I complex will be degraded.
R-HSA-200858 (Reactome) The protein Hck is a member of the Src family of non-receptor tyrosine kinases which is preferentially expressed in haematopoietic cells of the myeloid and B-lymphoid lineages. Src kinases are inhibited by tyrosine-phosphorylation at a carboxy-terminal site. The SH2 domains of these enzymes play an essential role in this regulation by binding to the tyrosine-phosphorylated tail. The SH2 domain of Hck regulates enzymatic activity indirectly; intramolecular interactions between the SH3 and catalytic domains appear to stabilize an inactive form of the kinase. The HIV-1 Nef protein, which is a high-affinity ligand for the Hck SH3 domain, binds to either the downregulated or activated form of Hck causing a large increase in Hck catalytic activity. The intact SH3-binding motif in Nef is crucial for Hck activation.
R-HSA-200879 (Reactome) The HIV Nef protein downregulates CD4 through sequential connection with clathrin-coated pits and the COP1 coatomer, resulting in accelerated endocytosis and lysosomal targeting. The small GTPase ARF1 controls the Nef-induced, COP-mediated late-endosomal targeting of CD4. Nef binds ARF1 directly and can recruit the GTPase onto endosomal membranes, leading to the eventual degradation of CD4 (Faure et al. 2004).
R-HSA-200908 (Reactome) Nef has been shown to bind specifically to a subset of the Src family of kinases. Nef/Fyn interaction centers on a proline-rich motif (Pro-x-x-Pro), which is implicated in SH3 binding. This domain is partially disordered in the absence of the binding partner; when bound this motif fully adopts a left-handed polyproline type II helix conformation upon complex formation with the Fyn SH3 domain. Within this structure the arginine residue (Arg77) of Nef interacts with Asp 100 of the RT loop within the Fyn SH3 domain, and triggers a hydrogen-bond rearrangement which allows the loop to adapt to complement the Nef surface. The Arg96 residue of the Fyn SH3 domain is specifically accommodated in the same hydrophobic pocket of Nef. The Nef-Fyn complex forms in vivo and may have a crucial role in the T cell perturbating action of Nef by altering T cell receptor signaling.
R-HSA-200952 (Reactome) The infectious cycle of primate lentiviruses is intimately linked to interactions between cells of the immune system. Nef, a potent virulence factor, alters cellular environments to increase lentiviral replication in the host, functioning as an adaptor protein. Nef activates Rac in T cell lines and in primary T cells following infection with HIV-1 in the absence of antigenic stimuli. Nef activates Rac by binding the DOCK2-ELMO1 complex, and this interaction is linked to the abilities of Nef to inhibit chemotaxis and promote T cell activation. Nef targets a critical switch that regulates Rac GTPases downstream of chemokine- and antigen-initiated signaling pathways. This interaction enables Nef to influence multiple aspects of T cell function and thus provides an important mechanism by which Nef impacts pathogenesis by primate lentiviruses.
R-HSA-200954 (Reactome) The Nef protein of the primate lentiviruses, including human immunodeficiency virus type 1 (HIV-1) and simian immunodeficiency virus (SIV), is a myristylated protein associated with increased viral replication and enhanced pathogenicity. Both the potentiation of T-lymphocyte activation and the enhanced serine-phosphorylation of HIV-1 capsid by Nef correlate with increased viral replication. The Nef proteins from HIV-1 and SIV bind to Lck. The SH3 and SH2 domains of Lck are sufficient for coprecipitation with non-tyrosine-phosphorylated Nef proteins. The conserved core region of HIV-1 Nef is essential for the interaction with Lck and is also important for enhanced HIV-1 replication in T-lymphocytes. The SIV and HIV-1 Nef proteins are differentially tyrosine-phosphorylated. The kinase-active Lck tyrosine-phosphorylates SIVmac239 Nef but does not phosphorylate HIV-1 Nef.
RAC1R-HSA-200952 (Reactome)
RANBP1ArrowR-HSA-165028 (Reactome)
RANBP1ArrowR-HSA-165055 (Reactome)
RANBP1R-HSA-180739 (Reactome)
RANGAP1ArrowR-HSA-165055 (Reactome)
RCC1mim-catalysisR-HSA-180687 (Reactome)
REV (P04618) proteinArrowR-HSA-165028 (Reactome)
REV (P04618) proteinR-HSA-165027 (Reactome)
RTC with minus

sssDNA:tRNA

primer:RNA template
R-HSA-180634 (Reactome)
Ran GTPase:GDPArrowR-HSA-165055 (Reactome)
Ran-GDPR-HSA-180687 (Reactome)
Ran-GTPArrowR-HSA-180687 (Reactome)
Ran-GTPR-HSA-165034 (Reactome)
Ran-GTPR-HSA-180728 (Reactome)
Ran:GTPArrowR-HSA-165028 (Reactome)
Ran:GTPR-HSA-165055 (Reactome)
RanBP1:Ran-GTP:CRM1:Rev-bound mRNA complexArrowR-HSA-180739 (Reactome)
RanBP1:Ran-GTP:CRM1:Rev-bound mRNA complexR-HSA-165028 (Reactome)
Rev

multimer-bound HIV-1

mRNA:Crm1:Ran:GTP:NPC
ArrowR-HSA-165043 (Reactome)
Rev

multimer-bound HIV-1

mRNA:Crm1:Ran:GTP:NPC
R-HSA-165047 (Reactome)
Rev multimer-bound

HIV-1

mRNA:Crm1:Ran:GTP
ArrowR-HSA-165034 (Reactome)
Rev multimer-bound

HIV-1

mRNA:Crm1:Ran:GTP
ArrowR-HSA-165047 (Reactome)
Rev multimer-bound

HIV-1

mRNA:Crm1:Ran:GTP
R-HSA-165043 (Reactome)
Rev multimer-bound

HIV-1

mRNA:Crm1:Ran:GTP
R-HSA-180739 (Reactome)
Rev multimer-bound

HIV-1

mRNA:Crm1:Ran:GTP
mim-catalysisR-HSA-165055 (Reactome)
Rev multimer-bound

HIV-1 mRNA:CRM1

complex
ArrowR-HSA-180885 (Reactome)
Rev multimer-bound

HIV-1 mRNA:CRM1

complex
R-HSA-165034 (Reactome)
Rev multimer-bound HIV-1 mRNAArrowR-HSA-165033 (Reactome)
Rev multimer-bound HIV-1 mRNAR-HSA-180885 (Reactome)
Rev-bound HIV-1 mRNAArrowR-HSA-165027 (Reactome)
Rev-bound HIV-1 mRNAR-HSA-165033 (Reactome)
Rev-multimerArrowR-HSA-165028 (Reactome)
Rev-multimerArrowR-HSA-180736 (Reactome)
Rev-multimerR-HSA-165033 (Reactome)
Rev-multimerR-HSA-180709 (Reactome)
Rev:Importin-beta:B23ArrowR-HSA-180732 (Reactome)
Rev:Importin-beta:B23R-HSA-180728 (Reactome)
Rev:Importin-beta:NPM1ArrowR-HSA-180725 (Reactome)
Rev:Importin-beta:NPM1R-HSA-180710 (Reactome)
Rev:importin-beta:B23:Ran-GTP complexArrowR-HSA-180728 (Reactome)
Rev:importin-beta:B23:Ran-GTP complexR-HSA-180736 (Reactome)
SKP1R-HSA-180599 (Reactome)
Tat (P04608)R-HSA-167234 (Reactome)
Tat:P-TEFb(Cyclin T1:Cdk9) complexArrowR-HSA-167234 (Reactome)
UbArrowR-HSA-180573 (Reactome)
UbArrowR-HSA-180603 (Reactome)
UbR-HSA-180540 (Reactome)
UbR-HSA-180597 (Reactome)
VIF (P69723) proteinR-HSA-180602 (Reactome)
VPRArrowR-HSA-180855 (Reactome)
VPRR-HSA-180855 (Reactome)
VPRR-HSA-180905 (Reactome)
VPU (P05919)R-HSA-180606 (Reactome)
Vif:APOBEC3G complexArrowR-HSA-180602 (Reactome)
Vif:APOBEC3G complexR-HSA-180555 (Reactome)
Vif:APOBEC3G complexTBarR-HSA-180630 (Reactome)
Vif:Cul5:SCF complexArrowR-HSA-180603 (Reactome)
Vpr:importin-alpha complexArrowR-HSA-180627 (Reactome)
Vpu:beta-TrCP1:Skp1 complexArrowR-HSA-180573 (Reactome)
XPO1ArrowR-HSA-165028 (Reactome)
XPO1R-HSA-180885 (Reactome)
class I MHC complexR-HSA-182243 (Reactome)
multi-ubiquitinated APOBEC3G:Vif:Cul5:SCF complexArrowR-HSA-180540 (Reactome)
multi-ubiquitinated APOBEC3G:Vif:Cul5:SCF complexR-HSA-180603 (Reactome)
multiubiquitinated CD4:Vpu:beta-TrCP_1:Skp1 complexArrowR-HSA-180597 (Reactome)
multiubiquitinated CD4:Vpu:beta-TrCP_1:Skp1 complexR-HSA-180573 (Reactome)
myristoylated nefArrowR-HSA-167601 (Reactome)
myristoylated nefArrowR-HSA-182171 (Reactome)
myristoylated nefArrowR-HSA-182263 (Reactome)
myristoylated nefR-HSA-164943 (Reactome)
myristoylated nefR-HSA-167566 (Reactome)
myristoylated nefR-HSA-167630 (Reactome)
myristoylated nefR-HSA-182243 (Reactome)
myristoylated nefR-HSA-200858 (Reactome)
myristoylated nefR-HSA-200879 (Reactome)
myristoylated nefR-HSA-200908 (Reactome)
myristoylated nefR-HSA-200952 (Reactome)
myristoylated nefR-HSA-200954 (Reactome)
nucleoporin-associated Rev:Importin-beta:B23 complexArrowR-HSA-180710 (Reactome)
nucleoporin-associated Rev:Importin-beta:B23 complexR-HSA-180732 (Reactome)
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