Vitamin B5 (pantothenate) and CoA biosynthesis Pathway (Zea mays)
From WikiPathways
Description
Pantothenate is the precursor of coenzyme A (CoA), the acyl carrier in scores of reactions. Pantothenate is made in the cytosol from pantoate and β-alanine, then converted to CoA in five steps, all probably cytosolic (Webb and Smith, 2011); the fifth step may also occur in plastids and peroxisomes. The three-step pathway to pantoate is not fully defined, but it is clear that step two, conversion of α-keto-isovalerate to ketopantoate, is mitochondrial (Ottenhof et al., 2004). Step one, α-keto-isovalerate formation from valine, is thus likely catalyzed by a mitochondrial branched chain aminotransferase (Taylor et al., 2004). The enzyme for step three (ketopantoate reduction to pantoate) is not known, so it is unclear whether this step is located in mitochondria or the cytosol. The details of the pantothenate and CoA biosynthesis (especially their compartmentalization) in plants are far from being elucidated. This diagram is an attempt to capture the current state of the field
Quality Tags
Ontology Terms
Bibliography
- Gerdes S, Lerma-Ortiz C, Frelin O, Seaver SM, Henry CS, de Crécy-Lagard V, Hanson AD; ''Plant B Vitamin Pathways and their Compartmentation: a Guide for the Perplexed.''; J Exp Bot, 2012 PubMed Europe PMC Scholia
- Ottenhof HH, Ashurst JL, Whitney HM, Saldanha SA, Schmitzberger F, Gweon HS, Blundell TL, Abell C, Smith AG; ''Organisation of the pantothenate (vitamin B5) biosynthesis pathway in higher plants.''; Plant J, 2004 PubMed Europe PMC Scholia
History
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External references
DataNodes
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Name | Type | Database reference | Comment |
---|---|---|---|
(R)-4'-phosphopantothenate | Metabolite | ||
(R)-pantoate | Metabolite | ||
(R)-pantothenate | Metabolite | ||
(R)-pantothenate transporter | GeneProduct | ||
(R0-4'-phosphopantothenynoyl-L-cysteine | Metabolite | ||
1.1.1.169 | GeneProduct | ||
1/2 GSSH | Metabolite | ||
2.1.2.11 | GeneProduct | 2.1.2.11 (Enzyme Nomenclature) | |
2.6.1.42 | GeneProduct | 2.6.1.42 (Enzyme Nomenclature) | |
2.7.1.24 | GeneProduct | 2.7.1.24 (Enzyme Nomenclature) | |
2.7.1.33 | GeneProduct | 2.7.1.33 (Enzyme Nomenclature) | |
2.7.7.3 | GeneProduct | 2.7.7.3 (Enzyme Nomenclature) | |
3'-dephospho-CoA | Metabolite | ||
4'-phosphopantetheine | Metabolite | ||
4.1.1.36 | GeneProduct | 4.1.1.36 (Enzyme Nomenclature) | |
5,10-methylene-tetrahydrofolate | Metabolite | ||
6.3.2.1 | GeneProduct | 6.3.2.1 (Enzyme Nomenclature) | |
6.3.2.5 | GeneProduct | 6.3.2.5 (Enzyme Nomenclature) | |
AC192244.3_FGP007 | GeneProduct | AC192244.3_FGP007 (Gramene Maize) | |
ADP | Metabolite | ||
AMP | Metabolite | ||
ATP | Metabolite | ||
Beta-Alanine | Metabolite | CHEBI:16958 (ChEBI) | |
CO2 | Metabolite | ||
CoA | Metabolite | ||
CoA transporter | GeneProduct | ||
CoA/dephospho-CoA transporter | GeneProduct | ||
GRMZM2G002173 | GeneProduct | GRMZM2G002173 (Gramene Maize) | |
GRMZM2G008209 | GeneProduct | GRMZM2G008209 (Gramene Maize) | |
GRMZM2G010596 | GeneProduct | GRMZM2G010596 (Gramene Maize) | |
GRMZM2G043819 | GeneProduct | GRMZM2G043819 (Gramene Maize) | |
GRMZM2G055899 | GeneProduct | GRMZM2G055899 (Gramene Maize) | |
GRMZM2G060045 | GeneProduct | GRMZM2G060045 (Gramene Maize) | |
GRMZM2G071208 | GeneProduct | GRMZM2G071208 (Gramene Maize) | |
GRMZM2G071294 | GeneProduct | GRMZM2G071294 (Gramene Maize) | |
GRMZM2G102015 | GeneProduct | GRMZM2G102015 (Gramene Maize) | |
GRMZM2G104504 | GeneProduct | GRMZM2G104504 (Gramene Maize) | |
GRMZM2G127911 | GeneProduct | GRMZM2G127911 (Gramene Maize) | |
GRMZM2G407396 | GeneProduct | GRMZM2G407396 (Gramene Maize) | |
GRMZM5G808624 | GeneProduct | GRMZM5G808624 (Gramene Maize) | |
GRMZM5G876146 | GeneProduct | GRMZM5G876146 (Gramene Maize) | |
GSH | Metabolite | ||
L-glutamate | Metabolite | ||
NADP | Metabolite | ||
NADPH | Metabolite | ||
PPi | Metabolite | ||
alpha-ketoglutarate | Metabolite | ||
alpha-ketoisovalerate | Metabolite | ||
cysteine | Metabolite | ||
ketopantoate | Metabolite | ||
long chain acyl-coA ester carrier (PXA1) | GeneProduct | ||
long chain acyl-coA esters | Metabolite | ||
pantetheine | Metabolite | ||
pantethine | Metabolite | ||
pantethine transporter | GeneProduct | ||
pantoate transporter | GeneProduct | ||
tetrahydrofolate (THF) | Metabolite | ||
valine | Metabolite |
Annotated Interactions
No annotated interactions