TCA cycle and deficiency of pyruvate dehydrogenase complex (PDHc) (Bombyx mori)

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Description

When transported into the inner mitochondrial matrix, pyruvate encounters two principal metabolizing enzymes: pyruvate carboxylase, PC (a gluconeogenic enzyme) and pyruvate dehydrogenase (PDH), the first enzyme of the PDH complex (PDHc). With a high cell-energy charge, co-enzyme A (CoA) is highly acylated, principally as acetyl-CoA, and able to obligately activate pyruvate carboxylase, directing pyruvate toward gluconeogenesis. When the energy charge is low, CoA is not acylated, therefore, pyruvate carboxylase is inactive, and pyruvate is preferentially metabolized via the PDHc and the TCA cycle to CO2 and H2O. The acetyl-CoA produced by the PDHc enters the TCA cycle and the reduced electron carriers (NADH and FADH2) that are generated during the oxidative reactions can then be used to drive ATP synthesis via oxidative phosphorylation.

Description source: [The Medical Biochemistryp Page](https://themedicalbiochemistrypage.org/tca-cycle.php).

The original pathway (https://www.wikipathways.org/pathways/WP2453) was lifted into Bombyx mori.

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Ontology Terms

 

Bibliography

  1. Hidemasa Bono, Takuma Sakamoto, Takeya Kasukawa, Hiroko Tabunoki; ''Systematic Functional Annotation Workflow for Insects.''; Insects, 2022 DOI Scholia

History

CompareRevisionActionTimeUserComment
142531view06:30, 16 March 2026Kotaro470change the organism
142516view10:38, 13 March 2026Kotaro470New pathway

External references

DataNodes

View all...
NameTypeDatabase referenceComment
(S)-MalateMetaboliteC00149 (KEGG Compound)
2-Hydroxy-ethyl- ThPPMetaboliteC05125 (KEGG Compound)
2-Oxo-glutarateMetaboliteC00026 (KEGG Compound)
3-carboxy-1- hydroxypropyl-ThPPMetabolite440649 (PubChem-compound)
ACLYGeneProductKWMTBOMO14536 (Other)
ACLYGeneProductMSTRG.13844.1 (Other)
ACLYGeneProductMSTRG.13844.2 (Other)
ACLYGeneProductMSTRG.7557.7 (Other)
ACO1GeneProductKWMTBOMO06100 (Other)
ACO1GeneProductMSTRG.2297.1 (Other)
ACO1GeneProductMSTRG.2297.2 (Other)
ACO1GeneProductMSTRG.2297.3 (Other)
ACO1GeneProductMSTRG.2297.5 (Other)
Acetyl-CoAMetaboliteC00024 (KEGG Compound)
CSGeneProductKWMTBOMO00279 (Other)
CSGeneProductKWMTBOMO10753 (Other)
CSGeneProductKWMTBOMO10754 (Other)
CSGeneProductKWMTBOMO10760 (Other)
CitrateMetaboliteC00158 (KEGG Compound)
DLATGeneProductKWMTBOMO01380 (Other)
DLATGeneProductMSTRG.16857.1 (Other)
DLATGeneProductMSTRG.16857.2 (Other)
DLATGeneProductMSTRG.16857.3 (Other)
DLDGeneProductKWMTBOMO13041 (Other)
DLSTGeneProductKWMTBOMO14761 (Other)
DLSTGeneProductKWMTBOMO15364 (Other)
DLSTGeneProductMSTRG.10154.1 (Other)
DLSTGeneProductMSTRG.14140.1 (Other)
DLSTGeneProductMSTRG.14920.1 (Other)
Dihydro- lipoamide-EMetaboliteCHEBI:80219 (ChEBI)
FHGeneProductKWMTBOMO11127 (Other)
FHGeneProductMSTRG.8984.2 (Other)
FumarateMetaboliteC00122 (KEGG Compound)
GlycolysisPathwayWP534 (WikiPathways)
IDH1GeneProductKWMTBOMO05820 (Other)
IDH1GeneProductMSTRG.1942.1 (Other)
IDH1GeneProductMSTRG.6322.4 (Other)
IDH3AGeneProductMSTRG.11494.1 (Other)
IDH3AGeneProductMSTRG.11494.2 (Other)
IDH3AGeneProductMSTRG.11494.4 (Other)
IDH3AGeneProductMSTRG.11494.5 (Other)
IsocitrateMetaboliteC00311 (KEGG Compound)
Lipoamide-EMetaboliteC15972 (KEGG Compound)
MDH1GeneProductKWMTBOMO06813 (Other)
MDH1GeneProductKWMTBOMO07103 (Other)
MDH1GeneProductMSTRG.19492.1 (Other)
MDH1GeneProductMSTRG.19492.2 (Other)
MDH1GeneProductMSTRG.3623.1 (Other)
OGDHGeneProductKWMTBOMO06002 (Other)
OGDHGeneProductKWMTBOMO13235 (Other)
OGDHGeneProductMSTRG.12079.1 (Other)
OGDHGeneProductMSTRG.12079.2 (Other)
OGDHGeneProductMSTRG.12079.4 (Other)
OGDHGeneProductMSTRG.12079.5 (Other)
OGDHGeneProductMSTRG.12079.6 (Other)
OGDHGeneProductMSTRG.12079.7 (Other)
OGDHGeneProductMSTRG.12079.8 (Other)
OGDHGeneProductMSTRG.12079.9 (Other)
OGDHGeneProductMSTRG.2170.1 (Other)
OGDHGeneProductMSTRG.2170.2 (Other)
OGDHGeneProductMSTRG.2170.3 (Other)
OxaloacetateMetaboliteC00036 (KEGG Compound)
OxalosuccinateMetaboliteC05379 (KEGG Compound)
PCK1GeneProductKWMTBOMO12093 (Other)
PCK1GeneProductKWMTBOMO12094 (Other)
PCK1GeneProductMSTRG.10526.1 (Other)
PCK1GeneProductMSTRG.10526.2 (Other)
PCK1GeneProductMSTRG.10528.1 (Other)
PCK1GeneProductMSTRG.10528.2 (Other)
PCK1GeneProductMSTRG.10528.3 (Other)
PCGeneProductKWMTBOMO10816 (Other)
PCGeneProductMSTRG.8565.11 (Other)
PCGeneProductMSTRG.8565.12 (Other)
PCGeneProductMSTRG.8565.13 (Other)
PCGeneProductMSTRG.8565.1 (Other)
PCGeneProductMSTRG.8565.2 (Other)
PCGeneProductMSTRG.8565.3 (Other)
PCGeneProductMSTRG.8565.4 (Other)
PCGeneProductMSTRG.8565.6 (Other)
PCGeneProductMSTRG.8565.7 (Other)
PCGeneProductMSTRG.8565.8 (Other)
PCGeneProductMSTRG.8565.9 (Other)
PDHA1GeneProductKWMTBOMO08241 (Other)
PDHA1GeneProductMSTRG.5215.1 (Other)
PDHA1GeneProductMSTRG.8494.3 (Other)
PDHA1GeneProductMSTRG.8494.4 (Other)
Phosphoenol- pyruvateMetaboliteC00074 (KEGG Compound)
PyruvateMetaboliteC00022 (KEGG Compound)
S-Acetyldihydro- lipoamide-EMetaboliteC16255 (KEGG Compound)
S-Succinyl- dihydrolipoamide-EMetaboliteC16254 (KEGG Compound)
SDHAGeneProductKWMTBOMO01346 (Other)
SDHAGeneProductMSTRG.1267.2 (Other)
SDHAGeneProductMSTRG.16812.1 (Other)
SUCLG2GeneProductKWMTBOMO08893 (Other)
SuccinateMetaboliteC00042 (KEGG Compound)
Succinoyl-CoAMetaboliteC00091 (KEGG Compound)
ThPPMetaboliteC00068 (KEGG Compound)

Annotated Interactions

No annotated interactions