TCA cycle and deficiency of pyruvate dehydrogenase complex (PDHc) (Apis cerana)

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Description

When transported into the inner mitochondrial matrix, pyruvate encounters two principal metabolizing enzymes: pyruvate carboxylase, PC (a gluconeogenic enzyme) and pyruvate dehydrogenase (PDH), the first enzyme of the PDH complex (PDHc). With a high cell-energy charge, co-enzyme A (CoA) is highly acylated, principally as acetyl-CoA, and able to obligately activate pyruvate carboxylase, directing pyruvate toward gluconeogenesis. When the energy charge is low, CoA is not acylated, therefore, pyruvate carboxylase is inactive, and pyruvate is preferentially metabolized via the PDHc and the TCA cycle to CO2 and H2O. The acetyl-CoA produced by the PDHc enters the TCA cycle and the reduced electron carriers (NADH and FADH2) that are generated during the oxidative reactions can then be used to drive ATP synthesis via oxidative phosphorylation.

Description source: [The Medical Biochemistryp Page](https://themedicalbiochemistrypage.org/tca-cycle.php).

The original pathway (https://www.wikipathways.org/pathways/WP2453) was lifted into Apis cerana.

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Quality Tags

Ontology Terms

 

Bibliography

  1. Kakeru Yokoi, Masatsugu Hatakeyama, Seigo Kuwazaki, Taro Maeda, Mikio Yoshiyama, Mari Horigane-Ogihara, Shigeru Matsuyama, Akiya Jouraku, Hidemasa Bono, Kiyoshi Kimura; ''Comprehensive expression data for two honey bee species, Apis mellifera and Apis cerana japonica''; Scientific Data, 2025 DOI Scholia

History

CompareRevisionActionTimeUserComment
142543view10:03, 16 March 2026Kotaro470change author
142537view09:52, 16 March 2026Kotaro470change the organism
142521view10:50, 13 March 2026Kotaro470New pathway

External references

DataNodes

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NameTypeDatabase referenceComment
(S)-MalateMetaboliteC00149 (KEGG Compound)
2-Hydroxy-ethyl- ThPPMetaboliteC05125 (KEGG Compound)
2-Oxo-glutarateMetaboliteC00026 (KEGG Compound)
3-carboxy-1- hydroxypropyl-ThPPMetabolite440649 (PubChem-compound)
ACO1GeneProductg4536.t1 (Other)
ATPCLGeneProduct108000656 (Entrez Gene)
Acetyl-CoAMetaboliteC00024 (KEGG Compound)
CSGeneProductg9788.t1 (Other)
CitrateMetaboliteC00158 (KEGG Compound)
DLDGeneProductSTRG.5224.1 (Other)
DLSTGeneProductSTRG.9195.1 (Other)
DLSTGeneProductg9131.t1 (Other)
Dihydro- lipoamide-EMetaboliteCHEBI:80219 (ChEBI)
FHGeneProductSTRG.1529.1 (Other)
FHGeneProductSTRG.1529.2 (Other)
FHGeneProductSTRG.1529.3 (Other)
FHGeneProductSTRG.1529.4 (Other)
FHGeneProductSTRG.1529.5 (Other)
FHGeneProductSTRG.1529.7 (Other)
FHGeneProductg1427.t1 (Other)
FHGeneProductg2447.t1 (Other)
FumarateMetaboliteC00122 (KEGG Compound)
GlycolysisPathwayWP534 (WikiPathways)
IDH1GeneProductg7803.t1 (Other)
IDH3AGeneProductSTRG.5710.12 (Other)
IDH3AGeneProductSTRG.5710.7 (Other)
IDH3AGeneProductSTRG.5710.8 (Other)
IDH3AGeneProductSTRG.5710.9 (Other)
IDH3AGeneProductg5772.t1 (Other)
IsocitrateMetaboliteC00311 (KEGG Compound)
LOC107997339GeneProduct107997339 (Entrez Gene)
Lipoamide-EMetaboliteC15972 (KEGG Compound)
MDH1GeneProductSTRG.9701.1 (Other)
MDH1GeneProductSTRG.9701.3 (Other)
OGDHGeneProductSTRG.2420.1 (Other)
OGDHGeneProductSTRG.2420.2 (Other)
OGDHGeneProductSTRG.2420.3 (Other)
OGDHGeneProductg2372.t1 (Other)
OxaloacetateMetaboliteC00036 (KEGG Compound)
OxalosuccinateMetaboliteC05379 (KEGG Compound)
PCBGeneProduct108004016 (Entrez Gene)
PDHA1GeneProductSTRG.3951.1 (Other)
PDHA1GeneProductSTRG.741.1 (Other)
PDHA1GeneProductg3964.t1 (Other)
PDHA1GeneProductg612.t1 (Other)
Phosphoenol- pyruvateMetaboliteC00074 (KEGG Compound)
PyruvateMetaboliteC00022 (KEGG Compound)
S-Acetyldihydro- lipoamide-EMetaboliteC16255 (KEGG Compound)
S-Succinyl- dihydrolipoamide-EMetaboliteC16254 (KEGG Compound)
SDHAGeneProductSTRG.10891.2 (Other)
SDHAGeneProductSTRG.10891.3 (Other)
SDHAGeneProductSTRG.10891.4 (Other)
SDHAGeneProductSTRG.10891.6 (Other)
SDHAGeneProductSTRG.10891.8 (Other)
SDHAGeneProductg10863.t1 (Other)
SDHAGeneProductg10864.t1 (Other)
SUCLG2GeneProductSTRG.9720.1 (Other)
SUCLG2GeneProductSTRG.9720.2 (Other)
SUCLG2GeneProductSTRG.9720.3 (Other)
SUCLG2GeneProductSTRG.9720.4 (Other)
SUCLG2GeneProductSTRG.9720.5 (Other)
SuccinateMetaboliteC00042 (KEGG Compound)
Succinoyl-CoAMetaboliteC00091 (KEGG Compound)
ThPPMetaboliteC00068 (KEGG Compound)
mucGeneProduct107995101 (Entrez Gene)

Annotated Interactions

No annotated interactions

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