Download Pathways

From WikiPathways

Contents 1 GPML 2 Eu.Gene 3 Plain text 4 PDF 5 SVG 6 PNG 7 Flatfile

Choose one of the file types below to download a set of pathways in that format. Choose between the following sets:

Categorized pathways

Only pathways that have been explicitly categorized. This includes pathways that have been carefully curated and typically excludes draft or test pathways not intended for distribution. (recommended)

All pathways

All pathways on the wiki, including draft or test pathways (such as the Sandbox pathway).

GPML

Click on one of the links below to download all pathways in GPML format. You can view and edit GPML files in PathVisio. From PathVisio you can also export these files to the [www.genmapp.org GenMAPP] mapp format and PDF.

All pathways

Categorized pathways

Unspecified Acetobacterium woodii Anopheles gambiae Arabidopsis thaliana Bacillus subtilis Beta vulgaris Brassica napus Bos taurus Caenorhabditis elegans Canis familiaris Clostridium thermocellum Caulobacter vibrioides Danio rerio Daphnia magna Daphnia pulex Drosophila melanogaster Escherichia coli Equus caballus Gallus gallus Glycine max Gibberella zeae Homo sapiens Hordeum vulgare Mus musculus Mycobacterium tuberculosis Oryza sativa Ovis aries Pan troglodytes Populus trichocarpa Rattus norvegicus Saccharomyces cerevisiae Solanum lycopersicum Solanum tuberosum Sus scrofa Triticum aestivum Vitis vinifera Xenopus tropicalis Zea mays Plasmodium falciparum

Unspecified Acetobacterium woodii Anopheles gambiae Arabidopsis thaliana Bacillus subtilis Beta vulgaris Brassica napus Bos taurus Caenorhabditis elegans Canis familiaris Clostridium thermocellum Caulobacter vibrioides Danio rerio Daphnia magna Daphnia pulex Drosophila melanogaster Escherichia coli Equus caballus Gallus gallus Glycine max Gibberella zeae Homo sapiens Hordeum vulgare Mus musculus Mycobacterium tuberculosis Oryza sativa Ovis aries Pan troglodytes Populus trichocarpa Rattus norvegicus Saccharomyces cerevisiae Solanum lycopersicum Solanum tuberosum Sus scrofa Triticum aestivum Vitis vinifera Xenopus tropicalis Zea mays Plasmodium falciparum

Eu.Gene

Click on one of the links below to download all pathways in the Eu.Gene format (pwf). Eu.Gene is a tool for microarray analysis in context of biological pathways (read more).

All pathways

Categorized pathways

Unspecified Acetobacterium woodii Anopheles gambiae Arabidopsis thaliana Bacillus subtilis Beta vulgaris Brassica napus Bos taurus Caenorhabditis elegans Canis familiaris Clostridium thermocellum Caulobacter vibrioides Danio rerio Daphnia magna Daphnia pulex Drosophila melanogaster Escherichia coli Equus caballus Gallus gallus Glycine max Gibberella zeae Homo sapiens Hordeum vulgare Mus musculus Mycobacterium tuberculosis Oryza sativa Ovis aries Pan troglodytes Populus trichocarpa Rattus norvegicus Saccharomyces cerevisiae Solanum lycopersicum Solanum tuberosum Sus scrofa Triticum aestivum Vitis vinifera Xenopus tropicalis Zea mays Plasmodium falciparum

Unspecified Acetobacterium woodii Anopheles gambiae Arabidopsis thaliana Bacillus subtilis Beta vulgaris Brassica napus Bos taurus Caenorhabditis elegans Canis familiaris Clostridium thermocellum Caulobacter vibrioides Danio rerio Daphnia magna Daphnia pulex Drosophila melanogaster Escherichia coli Equus caballus Gallus gallus Glycine max Gibberella zeae Homo sapiens Hordeum vulgare Mus musculus Mycobacterium tuberculosis Oryza sativa Ovis aries Pan troglodytes Populus trichocarpa Rattus norvegicus Saccharomyces cerevisiae Solanum lycopersicum Solanum tuberosum Sus scrofa Triticum aestivum Vitis vinifera Xenopus tropicalis Zea mays Plasmodium falciparum

Plain text

Click on one of the links below to download all pathways in plain text format. This format contains a list of all datanodes, with the identifier in the first column, and the database system in the second column.

All pathways

Categorized pathways

Unspecified Acetobacterium woodii Anopheles gambiae Arabidopsis thaliana Bacillus subtilis Beta vulgaris Brassica napus Bos taurus Caenorhabditis elegans Canis familiaris Clostridium thermocellum Caulobacter vibrioides Danio rerio Daphnia magna Daphnia pulex Drosophila melanogaster Escherichia coli Equus caballus Gallus gallus Glycine max Gibberella zeae Homo sapiens Hordeum vulgare Mus musculus Mycobacterium tuberculosis Oryza sativa Ovis aries Pan troglodytes Populus trichocarpa Rattus norvegicus Saccharomyces cerevisiae Solanum lycopersicum Solanum tuberosum Sus scrofa Triticum aestivum Vitis vinifera Xenopus tropicalis Zea mays Plasmodium falciparum

Unspecified Acetobacterium woodii Anopheles gambiae Arabidopsis thaliana Bacillus subtilis Beta vulgaris Brassica napus Bos taurus Caenorhabditis elegans Canis familiaris Clostridium thermocellum Caulobacter vibrioides Danio rerio Daphnia magna Daphnia pulex Drosophila melanogaster Escherichia coli Equus caballus Gallus gallus Glycine max Gibberella zeae Homo sapiens Hordeum vulgare Mus musculus Mycobacterium tuberculosis Oryza sativa Ovis aries Pan troglodytes Populus trichocarpa Rattus norvegicus Saccharomyces cerevisiae Solanum lycopersicum Solanum tuberosum Sus scrofa Triticum aestivum Vitis vinifera Xenopus tropicalis Zea mays Plasmodium falciparum

PDF

Click on one of the links below to download all pathways in Portable Document Format (PDF).

All pathways

Categorized pathways

Unspecified Acetobacterium woodii Anopheles gambiae Arabidopsis thaliana Bacillus subtilis Beta vulgaris Brassica napus Bos taurus Caenorhabditis elegans Canis familiaris Clostridium thermocellum Caulobacter vibrioides Danio rerio Daphnia magna Daphnia pulex Drosophila melanogaster Escherichia coli Equus caballus Gallus gallus Glycine max Gibberella zeae Homo sapiens Hordeum vulgare Mus musculus Mycobacterium tuberculosis Oryza sativa Ovis aries Pan troglodytes Populus trichocarpa Rattus norvegicus Saccharomyces cerevisiae Solanum lycopersicum Solanum tuberosum Sus scrofa Triticum aestivum Vitis vinifera Xenopus tropicalis Zea mays Plasmodium falciparum

Unspecified Acetobacterium woodii Anopheles gambiae Arabidopsis thaliana Bacillus subtilis Beta vulgaris Brassica napus Bos taurus Caenorhabditis elegans Canis familiaris Clostridium thermocellum Caulobacter vibrioides Danio rerio Daphnia magna Daphnia pulex Drosophila melanogaster Escherichia coli Equus caballus Gallus gallus Glycine max Gibberella zeae Homo sapiens Hordeum vulgare Mus musculus Mycobacterium tuberculosis Oryza sativa Ovis aries Pan troglodytes Populus trichocarpa Rattus norvegicus Saccharomyces cerevisiae Solanum lycopersicum Solanum tuberosum Sus scrofa Triticum aestivum Vitis vinifera Xenopus tropicalis Zea mays Plasmodium falciparum

SVG

Click on one of the links below to download all pathways in SVG format. The SVG files can be used to create high quality images for publication purposes. You can edit and convert the SVG files using Inkscape.

All pathways

Categorized pathways

Unspecified Acetobacterium woodii Anopheles gambiae Arabidopsis thaliana Bacillus subtilis Beta vulgaris Brassica napus Bos taurus Caenorhabditis elegans Canis familiaris Clostridium thermocellum Caulobacter vibrioides Danio rerio Daphnia magna Daphnia pulex Drosophila melanogaster Escherichia coli Equus caballus Gallus gallus Glycine max Gibberella zeae Homo sapiens Hordeum vulgare Mus musculus Mycobacterium tuberculosis Oryza sativa Ovis aries Pan troglodytes Populus trichocarpa Rattus norvegicus Saccharomyces cerevisiae Solanum lycopersicum Solanum tuberosum Sus scrofa Triticum aestivum Vitis vinifera Xenopus tropicalis Zea mays Plasmodium falciparum

Unspecified Acetobacterium woodii Anopheles gambiae Arabidopsis thaliana Bacillus subtilis Beta vulgaris Brassica napus Bos taurus Caenorhabditis elegans Canis familiaris Clostridium thermocellum Caulobacter vibrioides Danio rerio Daphnia magna Daphnia pulex Drosophila melanogaster Escherichia coli Equus caballus Gallus gallus Glycine max Gibberella zeae Homo sapiens Hordeum vulgare Mus musculus Mycobacterium tuberculosis Oryza sativa Ovis aries Pan troglodytes Populus trichocarpa Rattus norvegicus Saccharomyces cerevisiae Solanum lycopersicum Solanum tuberosum Sus scrofa Triticum aestivum Vitis vinifera Xenopus tropicalis Zea mays Plasmodium falciparum

PNG

Click on one of the links below to download all pathways in the Portable Network Graphics (png) format.

All pathways

Categorized pathways

Unspecified Acetobacterium woodii Anopheles gambiae Arabidopsis thaliana Bacillus subtilis Beta vulgaris Brassica napus Bos taurus Caenorhabditis elegans Canis familiaris Clostridium thermocellum Caulobacter vibrioides Danio rerio Daphnia magna Daphnia pulex Drosophila melanogaster Escherichia coli Equus caballus Gallus gallus Glycine max Gibberella zeae Homo sapiens Hordeum vulgare Mus musculus Mycobacterium tuberculosis Oryza sativa Ovis aries Pan troglodytes Populus trichocarpa Rattus norvegicus Saccharomyces cerevisiae Solanum lycopersicum Solanum tuberosum Sus scrofa Triticum aestivum Vitis vinifera Xenopus tropicalis Zea mays Plasmodium falciparum

Unspecified Acetobacterium woodii Anopheles gambiae Arabidopsis thaliana Bacillus subtilis Beta vulgaris Brassica napus Bos taurus Caenorhabditis elegans Canis familiaris Clostridium thermocellum Caulobacter vibrioides Danio rerio Daphnia magna Daphnia pulex Drosophila melanogaster Escherichia coli Equus caballus Gallus gallus Glycine max Gibberella zeae Homo sapiens Hordeum vulgare Mus musculus Mycobacterium tuberculosis Oryza sativa Ovis aries Pan troglodytes Populus trichocarpa Rattus norvegicus Saccharomyces cerevisiae Solanum lycopersicum Solanum tuberosum Sus scrofa Triticum aestivum Vitis vinifera Xenopus tropicalis Zea mays Plasmodium falciparum

Flatfile

Click on one of the links below to download all pathways in either a tab-delimited or HTML table format. The output includes gene, protein and small molecule contents.

• All species (tab, html)
• Homo sapiens (tab, html)
• Mus Musculus (tab, html)
• Rattus norvegicus (tab, html)
• Drosophila melanogaster (tab, html)
• Caenorhabditis elegans (tab, html)
• Saccharomyces cerevisiae (tab, html)
• Danio rerio (tab, html)