From WikiPathways

Error rendering pathway page

This revision of the pathway probably contains invalid GPML code. If this happens to the most recent revision, try reverting the pathway using the pathway history displayed below or contact the site administrators (see WikiPathways:About) to resolve this problem.

Pathway history

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Compare	Revision	Action	Time	User	Comment
	69162	view	18:19, 8 July 2013	MaintBot	Updated to 2013 gpml schema
	67346	view	10:40, 26 June 2013	Christine Chichester	Ontology Term : 'homologous recombination pathway of double-strand break repair' added !
	59062	view	21:01, 21 February 2013	MaintBot	Updated Ensembl and UniProt data source
	41350	view	00:26, 2 March 2011	MaintBot	Removed redundant pathway information and comments
	36279	view	23:08, 17 March 2010	Khanspers	Modified categories
	35588	view	15:30, 12 February 2010	Thomas	Modified description
	35575	view	15:22, 12 February 2010	Thomas	added literature
	34755	view	23:19, 13 January 2010	Khanspers	Modified categories
	34750	view	23:09, 13 January 2010	Khanspers	Added connectors
	31862	view	12:34, 14 August 2009	MaintBot	Fixed group labels
	30870	view	00:13, 30 July 2009	MaintBot	New pathway

Error details

exception 'Exception' with message 'Unable to convert to /var/www/wikipathways/images/6/67/WP1258_30870.svg:
<BR>Status:1
<BR>Message:[     0.832] Info:  Recognized format [Namespace: prefix "" is mapped to URI "http://genmapp.org/GPML/2008a"]
[     1.297] Info:  Document is valid according to the xml schema definition 'GPML2008a.xsd'
Warn:  Reference to non existing biopax element found: fc6
Warn:  Reference to non existing biopax element found: f41
Warn:  Reference to non existing biopax element found: af4
Warn:  Reference to non existing biopax element found: def
Exception in thread "main" java.util.ConcurrentModificationException
	at java.util.ArrayList$Itr.checkForComodification(ArrayList.java:866)
	at java.util.ArrayList$Itr.next(ArrayList.java:838)
	at org.pathvisio.core.view.VPathway.fromModel(Unknown Source)
	at org.pathvisio.core.model.BatikImageExporter.doExport(Unknown Source)
	at org.pathvisio.core.Engine.exportPathway(Unknown Source)
	at org.pathvisio.core.util.Converter.main(Unknown Source)

<BR>Command:java -Xmx1024M -jar /var/www/wikipathways/wpi/bin/pathvisio_core.jar "/var/www/wikipathways/images/a/ad/WP1258_30870.gpml" "/var/www/wikipathways/images/6/67/WP1258_30870.svg" 2>&1<BR>' in /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php:1255
Stack trace:
#0 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1227): Pathway::convertWithPathVisio('/var/www/wikipa...', '/var/www/wikipa...')
#1 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1137): Pathway->saveConvertedByPathVisioCache('svg')
#2 /var/www/wikipathways/wpi/extensions/Pathways/PathwayPage.php(21): Pathway->updateCache('svg')
#3 [internal function]: renderPathwayPage(Object(Parser), '<?xml version="...', Object(StripState))
#4 /var/www/wikipathways/includes/Hooks.php(125): call_user_func_array('renderPathwayPa...', Array)
#5 /var/www/wikipathways/includes/parser/Parser.php(318): wfRunHooks('ParserBeforeStr...', Array)
#6 /var/www/wikipathways/includes/Article.php(3406): Parser->parse('<?xml version="...', Object(Title), Object(ParserOptions), true, true, 30870)
#7 /var/www/wikipathways/includes/Article.php(875): Article->outputWikiText('<?xml version="...', false)
#8 /var/www/wikipathways/includes/Wiki.php(437): Article->view()
#9 /var/www/wikipathways/includes/Wiki.php(59): MediaWiki->performAction(Object(OutputPage), Object(Article), Object(Title), Object(User), Object(WebRequest))
#10 /var/www/wikipathways/index.php(93): MediaWiki->initialize(Object(Title), Object(Article), Object(OutputPage), Object(User), Object(WebRequest))
#11 {main}