Valine, leucine and isoleucine degradation (Caenorhabditis elegans)

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Description

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Ontology Terms

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History

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Compare	Revision	Action	Time	User	Comment
	34744	view	22:49, 13 January 2010	Khanspers	Deleted pathway: duplicate
	33726	view	15:41, 8 December 2009	Pieter Giesbertz	fixed datapoints from KEGG
	33725	view	15:29, 8 December 2009	Pieter Giesbertz	Periodical save, work in progress
	33724	view	15:19, 8 December 2009	Pieter Giesbertz	Periodical save, work in progress
	33723	view	15:09, 8 December 2009	Pieter Giesbertz	Periodical save, work in progress
	33722	view	14:59, 8 December 2009	Pieter Giesbertz	manually improving KEGG pathway
	33719	view	13:39, 8 December 2009	Pieter Giesbertz	manually improving KEGG pathway
	33718	view	12:48, 8 December 2009	Pieter Giesbertz	New pathway

External references

DataNodes

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Name	Type	Database reference	Comment
(S)-3-Hydroxyisobutyric acid	Metabolite	HMDB00023 (HMDB)
(S)-3-Hydroxyisobutyryl-CoA	Metabolite	HMDB01052 (HMDB)
2-Methyl-1-hydroxybutyl-ThPP	Metabolite	HMDB12310 (HMDB)
2-Methyl-1-hydroxypropyl-ThPP	Metabolite	HMDB06866 (HMDB)
2-Methyl-3-hydroxybutyryl-CoA	Metabolite	HMDB01356 (HMDB)
2-Methylacetoacetyl-CoA	Metabolite	HMDB01157 (HMDB)
3-Aminoisobutanoic acid	Metabolite	HMDB03911 (HMDB)
3-Hydroxy-3-methylglutaryl-CoA	Metabolite	HMDB01375 (HMDB)
3-Hydroxyisovaleryl-CoA	Metabolite	HMDB06870 (HMDB)
3-Methyl-1-hydroxybutyl-ThPP	Metabolite	HMDB06865 (HMDB)
3-Methylcrotonyl-CoA	Metabolite	HMDB01493 (HMDB)
3-Methylglutaconyl-CoA	Metabolite	6102 (PubChem)
Acetoacetic acid	Metabolite	Acetoacetic acid (Wikipedia)
Acetoacetyl-CoA	Metabolite	HMDB01484 (HMDB)
Acetyl-CoA	Metabolite	HMDB01206 (HMDB)
B0272.3	GeneProduct	B0272.3 (Ensembl C. elegans)
B0303.3	GeneProduct	B0303.3 (Ensembl C. elegans)
Branched-chain fatty acid	Metabolite	8270 (PubChem)
Dihydrolipoamide-E	Metabolite	HMDB06879 (HMDB)
F32B6.2	GeneProduct	F32B6.2 (Ensembl C. elegans)
F53A2.7	GeneProduct	F53A2.7 (Ensembl C. elegans)
F54C8.1	GeneProduct	186222 (Entrez Gene)
Isobutyryl-CoA	Metabolite	HMDB01243 (HMDB)
Isovaleryl-CoA	Metabolite	HMDB01113 (HMDB)
K09H11.1	GeneProduct	178962 (Entrez Gene)
Ketoleucine	Metabolite	HMDB00695 (HMDB)
L-Isoleucine	Metabolite	HMDB00172 (HMDB)
L-Leucine	Metabolite	HMDB00687 (HMDB)
L-Valine	Metabolite	HMDB00883 (HMDB)
LLC1.3	GeneProduct	LLC1.3 (Ensembl C. elegans)
Lipoamide-E	Metabolite	HMDB06877 (HMDB)
Methacrylyl-CoA	Metabolite	HMDB01011 (HMDB)
Methylmalonic acid	Metabolite	HMDB00202 (HMDB)
Propionyl-CoA	Metabolite	HMDB01275 (HMDB)
R-Methylmalonyl-CoA	Metabolite	HMDB02255 (HMDB)
S-(2-Methylbutanoyl)-dihydrolipoamide-E	Metabolite	HMDB06869 (HMDB)
S-(2-Methylpropionyl)-dihydrolipoamide-E	Metabolite	HMDB06868 (HMDB)
S-(3-Methylbutanoyl)-dihydrolipoamide-E	Metabolite	HMDB06867 (HMDB)
S-2-Methylbutanoyl-CoA	Metabolite	47205293 (PubChem)
S-3-Methyl-2-oxopentanoic acid	Metabolite	3940 (PubChem)
S-Methylmalonic acid semialdehyde	Metabolite	HMDB02217 (HMDB)
S-Methylmalonyl-CoA	Metabolite	HMDB02310 (HMDB)
Succinyl-CoA	Metabolite	HMDB01022 (HMDB)
T02G5.4	GeneProduct	T02G5.4 (Ensembl C. elegans)
T02G5.7	GeneProduct	T02G5.7 (Ensembl C. elegans)
T08B2.7	GeneProduct	T08B2.7 (Ensembl C. elegans)
Thiamine pyrophosphate	Metabolite	HMDB01372 (HMDB)
Tiglyl-CoA	Metabolite	HMDB02054 (HMDB)
Transketolase	GeneProduct	Y39E4A.3 (WormBase)	Original kegg element: gene;12;cel:F27D4.5 cel:Y39E4A.3
Y44A6D.5	GeneProduct	180361 (Entrez Gene)
Y71G12B.10	GeneProduct	Y71G12B.10 (Ensembl C. elegans)
ZK669.4	GeneProduct	174279 (Entrez Gene)
a-Ketoisovaleric acid	Metabolite	HMDB00019 (HMDB)
acdh-10	GeneProduct	T08G2.3 (WormBase)	Original kegg element: gene;58;cel:K05F1.3 cel:K09H11.1 cel:T08G2.3 cel:T25G12.5
acdh-3	GeneProduct	K06A5.6 (WormBase)	Original kegg element: gene;41;cel:K06A5.6
acdh-7	GeneProduct	T25G12.5 (WormBase)	Original kegg element: gene;58;cel:K05F1.3 cel:K09H11.1 cel:T08G2.3 cel:T25G12.5
acdh-8	GeneProduct	K05F1.3 (WormBase)
ard-1	GeneProduct	F01G4.2 (WormBase)
bcat-1	GeneProduct	K02A4.1 (WormBase)	Original kegg element: gene;37;cel:K02A4.1 cel:Y44A6D.5
ech-1	GeneProduct	C29F3.1 (WormBase)
ech-2	GeneProduct	F38H4.8 (WormBase)	Original kegg element: gene;57;cel:C29F3.1 cel:F38H4.8 cel:F43H9.1 cel:F56B3.5 cel:T05G5.6 cel:T08B2.7 cel:Y105E8A.4
ech-3	GeneProduct	F43H9.1 (WormBase)	Original kegg element: gene;57;cel:C29F3.1 cel:F38H4.8 cel:F43H9.1 cel:F56B3.5 cel:T05G5.6 cel:T08B2.7 cel:Y105E8A.4
ech-5	GeneProduct	F56B3.5 (WormBase)	Original kegg element: gene;57;cel:C29F3.1 cel:F38H4.8 cel:F43H9.1 cel:F56B3.5 cel:T05G5.6 cel:T08B2.7 cel:Y105E8A.4
ech-6	GeneProduct	T05G5.6 (WormBase)	Original kegg element: gene;57;cel:C29F3.1 cel:F38H4.8 cel:F43H9.1 cel:F56B3.5 cel:T05G5.6 cel:T08B2.7 cel:Y105E8A.4
ech-7	GeneProduct	Y105E8A.4 (WormBase)	Original kegg element: gene;57;cel:C29F3.1 cel:F38H4.8 cel:F43H9.1 cel:F56B3.5 cel:T05G5.6 cel:T08B2.7 cel:Y105E8A.4
ech-8	GeneProduct	F01G10.2 (WormBase)
ech-9	GeneProduct	F01G10.3 (WormBase)
gta-1	GeneProduct	K04D7.3 (WormBase)
hacd-1	GeneProduct	R09B5.6 (WormBase)
ivd-1	GeneProduct	C02B10.1 (WormBase)	Original kegg element: gene;41;cel:K06A5.6
pcca-1	GeneProduct	F27D9.5 (WormBase)
pccb-1	GeneProduct	F52E4.1 (WormBase)
tag-173	GeneProduct	F27D4.5 (WormBase)	Original kegg element: gene;43;cel:F27D4.5 cel:Y39E4A.3

Annotated Interactions

No annotated interactions