Homologous recombination (Bos taurus)
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Error details
exception 'Exception' with message 'Unable to convert to /var/www/wikipathways/images/c/c3/WP1036_33766.svg: <BR>Status:1 <BR>Message:[ 0.530] Info: Recognized format [Namespace: prefix "" is mapped to URI "http://genmapp.org/GPML/2008a"] [ 0.824] Info: Document is valid according to the xml schema definition 'GPML2008a.xsd' Warn: Reference to non existing biopax element found: fc6 Warn: Reference to non existing biopax element found: f41 Warn: Reference to non existing biopax element found: af4 Warn: Reference to non existing biopax element found: def Exception in thread "main" java.util.ConcurrentModificationException at java.util.ArrayList$Itr.checkForComodification(ArrayList.java:866) at java.util.ArrayList$Itr.next(ArrayList.java:838) at org.pathvisio.core.view.VPathway.fromModel(Unknown Source) at org.pathvisio.core.model.BatikImageExporter.doExport(Unknown Source) at org.pathvisio.core.Engine.exportPathway(Unknown Source) at org.pathvisio.core.util.Converter.main(Unknown Source) <BR>Command:java -Xmx1024M -jar /var/www/wikipathways/wpi/bin/pathvisio_core.jar "/var/www/wikipathways/images/4/45/WP1036_33766.gpml" "/var/www/wikipathways/images/c/c3/WP1036_33766.svg" 2>&1<BR>' in /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php:1255 Stack trace: #0 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1227): Pathway::convertWithPathVisio('/var/www/wikipa...', '/var/www/wikipa...') #1 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1137): Pathway->saveConvertedByPathVisioCache('svg') #2 /var/www/wikipathways/wpi/extensions/Pathways/PathwayPage.php(21): Pathway->updateCache('svg') #3 [internal function]: renderPathwayPage(Object(Parser), '<?xml version="...', Object(StripState)) #4 /var/www/wikipathways/includes/Hooks.php(125): call_user_func_array('renderPathwayPa...', Array) #5 /var/www/wikipathways/includes/parser/Parser.php(318): wfRunHooks('ParserBeforeStr...', Array) #6 /var/www/wikipathways/includes/Article.php(3406): Parser->parse('<?xml version="...', Object(Title), Object(ParserOptions), true, true, 33766) #7 /var/www/wikipathways/includes/Article.php(875): Article->outputWikiText('<?xml version="...', false) #8 /var/www/wikipathways/includes/Wiki.php(437): Article->view() #9 /var/www/wikipathways/includes/Wiki.php(59): MediaWiki->performAction(Object(OutputPage), Object(Article), Object(Title), Object(User), Object(WebRequest)) #10 /var/www/wikipathways/index.php(93): MediaWiki->initialize(Object(Title), Object(Article), Object(OutputPage), Object(User), Object(WebRequest)) #11 {main}