Splicing factor NOVA regulated synaptic proteins (Mus musculus)

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Revision as of 13:04, 21 March 2011 by B.taneri (Talk | contribs)
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1GIRK2Kcnq2SloNIK/Mapk4GABAB2R4.1RCamk2gChl1Rap1gapCASKNetrin G1GlyRa2PMCA1Igsf4bSyntaxin1PIP2CalsynteninNMDAR1MAP4nAChRa2Rap1SKIPIgsf4aN-CadherinJNK2GABAARg2Dab1Cav2.2Aplp2PKCz4.1BEphrinA5RGephyrinSyntaxin2EphrinA5Munc18NMDAR2BClasp1Plcb4Cav2.24.1GLARAGRINneurochnondrinSloa-catenin4.1NIntegrin a2CaskGluR6NeogeninCASKChl1N-CadherinAnkyrin GCASKDab1a-cateninLARGluR6CaskPKCzPlcb4GABAB2RGephyrinnAChRa2Plcb44.1R4.1RPIP2Ankyrin GAnkyrin GJNK2


Description

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Bibliography

  1. Ule J, Ule A, Spencer J, Williams A, Hu JS, Cline M, Wang H, Clark T, Fraser C, Ruggiu M, Zeeberg BR, Kane D, Weinstein JN, Blume J, Darnell RB; ''Nova regulates brain-specific splicing to shape the synapse.''; Nat Genet, 2005 PubMed Europe PMC Scholia
  2. J. Ule, G. Stefani, A. Mele, M. Ruggiu, X. Wang, B. Taneri, T. Gaasterland, B.J. Blencowe, R.B. Darnell; ''An RNA map predicting Nova-dependent splicing regulation.''; Nature, 2006 PubMed Europe PMC Scholia

History

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123566view10:02, 4 August 2022EgonwConverted legend content to shapes.
123565view09:58, 4 August 2022EgonwRemoved redundant whitespace in labels
123564view09:53, 4 August 2022EgonwConverted into a text box
106863view13:34, 17 September 2019MaintBotHMDB identifier normalization
89961view18:11, 6 October 2016Mkutmonfix unconnected lines
88456view11:57, 9 August 2016MkutmonModified title
78426view10:26, 7 January 2015MaintBotadded missing graphIds
71717view20:15, 17 October 2013MaintBotAutomated update of data sources
71310view17:14, 17 October 2013MaintBotAutomated update of data sources
69063view18:07, 8 July 2013MaintBotUpdated to 2013 gpml schema
67652view11:44, 26 June 2013DdiglesOntology Term : 'cadherin mediated signaling pathway' added !
59012view20:33, 21 February 2013MaintBotUpdated Ensembl and UniProt data source
42575view16:58, 5 April 2011MkutmonModified categories
42574view16:56, 5 April 2011MkutmonModified description
42573view14:17, 5 April 2011Mkutmonnew literature reference
42572view12:01, 5 April 2011B.taneriModified description
42511view09:49, 31 March 2011Mkutmonconnect missing lines and form complexes + new legend
42438view16:02, 25 March 2011B.taneriPeriodical save, work in progress
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External references

DataNodes

View all...
NameTypeDatabase referenceComment
4.1BGeneProduct13823 (Entrez Gene) Validated target - predicted by splicing microarray
4.1GGeneProduct13822 (Entrez Gene) Validated target - predicted by splicing microarray
4.1NGeneProduct13821 (Entrez Gene) Validated target - predicted by bioinformatics
4.1R ProteinValidated target - predicted by splicing microarray
4.1RGeneProduct269587 (Entrez Gene) Validated target - predicted by splicing microarray
AGRINProteinA2ASQ1 (Uniprot/TrEMBL) Validated target - predicted by splicing microarray
Ankyrin GGeneProduct11735 (Entrez Gene) Validated target - predicted by splicing microarray
Aplp2GeneProductENSMUSG00000031996 (Ensembl Mouse) Validated target - predicted by splicing microarray
CASK GeneProductENSMUSG00000031012 (Ensembl Mouse) Validated target - predicted by splicing microarray
CASK ProteinP06796 (Uniprot/TrEMBL) Validated target - predicted by splicing microarray
CalsynteninGeneProduct65945 (Entrez Gene) Validated target - predicted by splicing microarray
Camk2gGeneProductENSMUSG00000021820 (Ensembl Mouse) Validated target - predicted by splicing microarray
CaskGeneProductENSMUSG00000031012 (Ensembl Mouse) Validated target - predicted by splicing microarray
Cav2.2 GeneProductENSMUSG00000000058 (Ensembl Mouse) Validated target - predicted by splicing microarray
Cav2.2GeneProductENSMUSG00000000058 (Ensembl Mouse) Validated target - predicted by splicing microarray
Chl1GeneProductENSMUSG00000030077 (Ensembl Mouse) Validated target - predicted by splicing microarray
Clasp1GeneProductENSMUSG00000064302 (Ensembl Mouse) Validated target - predicted by splicing microarray
Dab1GeneProductENSMUSG00000028519 (Ensembl Mouse) Validated target - predicted by bioinformatics
EphrinA5GeneProduct13640 (Entrez Gene) Validated target - predicted by splicing microarray
EphrinA5RGeneProductValidated target - predicted by splicing microarray
GABAARg2GeneProductValidated target
GABAB2RProteinCLIP predicted target
GIRK2 GeneProductCLIP predicted target
GephyrinGeneProductValidated target - predicted by splicing microarray
GluR6GeneProductValidated target - predicted by splicing microarray
GlyRa2GeneProductValidated target
Igsf4aGeneProduct54725 (Entrez Gene) Validated target - predicted by splicing microarray
Igsf4bGeneProduct94332 (Entrez Gene) Validated target - predicted by bioinformatics
Integrin a2 GeneProductValidated target - predicted by bioinformatics
JNK2GeneProduct26420 (Entrez Gene) Validated target - predicted by CLIP
Kcnq2GeneProductENSMUSG00000016346 (Ensembl Mouse) Validated target - predicted by splicing microarray
LAR GeneProductValidated target - predicted by splicing microarray
MAP4ProteinP27546 (Uniprot/TrEMBL) Validated target - predicted by bioinformatics
Munc18GeneProductValidated target - predicted by splicing microarray
N-Cadherin GeneProduct
NIK/Mapk4 GeneProductENSMUSG00000024558 (Ensembl Mouse) Validated target - predicted by splicing microarray
NMDAR1GeneProduct14810 (Entrez Gene) Validated target - predicted by splicing microarray
NMDAR2BGeneProduct14812 (Entrez Gene) CLIP predicted target
NeogeninGeneProduct18007 (Entrez Gene) Validated target - predicted by CLIP
Netrin G1GeneProduct80883 (Entrez Gene) Validated target - predicted by splicing microarray
PIP2 MetaboliteHMDB10032 (HMDB)
PKCzGeneProductCLIP predicted target
PMCA1GeneProduct67972 (Entrez Gene) Validated target - predicted by splicing microarray
Plcb4GeneProductENSMUSG00000039943 (Ensembl Mouse) Validated target - predicted by splicing microarray
Rap1GeneProduct57321 (Entrez Gene)
Rap1gapGeneProduct110351 (Entrez Gene) Validated target - predicted by splicing microarray
SKIP GeneProductValidated target - predicted by splicing microarray
Slo ProteinValidated target - predicted by splicing microarray
SloGeneProduct16531 (Entrez Gene) Validated target - predicted by splicing microarray
Syntaxin1GeneProduct
Syntaxin2GeneProductValidated target - predicted by splicing microarray
a-catenin GeneProductValidated target - predicted by splicing microarray
nAChRa2GeneProductCLIP predicted target
neurochnondrin GeneProductValidated target - predicted by splicing microarray

Annotated Interactions

No annotated interactions

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