Seed Development (Oryza sativa)

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Compare	Revision	Action	Time	User	Comment
	48316	view	20:05, 18 May 2012	Mamatha	Deleted pathway: obsolete version
	47684	view	23:45, 2 April 2012	Mamatha	New pathway

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Name	Type	Database reference	Comment
EF-1-delta 2	GeneProduct	LOC_Os03g29260 (Rice Ensembl Gene)	Elongation factor 1 beta 2
EPSPS1	GeneProduct	LOC_Os06g04280 (Rice Ensembl Gene)	5-Enolpyruvylshikimate-3-phosphate synthase 1
2-dehydro-3-deoxyphosphooctonate aldolase	GeneProduct	LOC_Os12g10784 (Rice Ensembl Gene)
ABA Response Element binding protein	GeneProduct	LOC_Os05g41070 (Rice Ensembl Gene)
ABF1/ABI5	GeneProduct	LOC_Os01g64000 (Rice Ensembl Gene)
ACO1	GeneProduct	LOC_Os09g27750 (Rice Ensembl Gene)
ADHIII/ FDH	GeneProduct	LOC_Os02g57040 (Rice Ensembl Gene)	Alcohol dehydrogenase class 3; Also called FALDH, GSH-FDH (Glutathione-dependent formaldehyde dehydrogenase)
ADP ribosylation GTPase	GeneProduct	LOC_Os03g17020 (Rice Ensembl Gene)
AGPL3/ APL3	GeneProduct	LOC_Os03g52460 (Rice Ensembl Gene)
AHOX	GeneProduct	LOC_Os10g39030 (Rice Ensembl Gene)	Associated with HOX family protein, expressed (UniProt Q8LN25)- Assigned as AHOX by Nemeth D and Hanumappa M (08/19/2010)
ALDH7	GeneProduct	LOC_Os09g26880 (Rice Ensembl Gene)	Needed for seed maturation and viability. Expression Patterns during Seed Development Correspond with Pigment Accumulation Patterns in Seeds Plays a role in the removal of MDA that forms during seed desiccation
ALDP	GeneProduct	LOC_Os11g07020 (Rice Ensembl Gene)	Aldolase
AOPBP-like (Dof ZF)	GeneProduct	LOC_Os07g48570 (Rice Ensembl Gene)
AP-1 complex subunit gamma-1	GeneProduct	LOC_Os06g07090 (Rice Ensembl Gene)
AP2 domain containing protein	GeneProduct	LOC_Os03g64260 (Rice Ensembl Gene)
APL1/ AGPL1	GeneProduct	LOC_Os05g50380 (Rice Ensembl Gene)	ADP-glucose Pyrophosphorylase large subunit 1
APL2/ AGPL2	GeneProduct	LOC_Os01g44220 (Rice Ensembl Gene)	ADP-glucose Pyrophosphorylase large subunit 2, binding only happens with APS2b SSP genes examined was significantly suppressed in KD-RISBZ1/KD-RPBF expression diminished during grain filling at high temperatures
APL4/ AGPL4	GeneProduct	LOC_Os07g13980 (Rice Ensembl Gene)
APRL3	GeneProduct	LOC_Os02g51850 (Rice Ensembl Gene)	Disulfide Isomerase
APS1/ AGPS1	GeneProduct	LOC_Os09g12660 (Rice Ensembl Gene)	ADP-glucose Pyrophosphorylase small subunit 1  expression diminished during grain filling at high temperatures
APS2a/APS2b/ AGPS2	GeneProduct	LOC_Os08g25734 (Rice Ensembl Gene)	Also called AGPS2, ADP-glucose Pyrophosphorylase small subunit 2; SSP genes examined was significantly suppressed in KD-RISBZ1/KD-RPBF has two different transcripts= a:in leaf, b:in endosperm; binding with APL2 and Down regulation by RISBZ1 only happens with APS2b, binding with APL1 only happens with APS2a expression diminished during grain filling at high temperatures
APT1	GeneProduct	LOC_Os12g39860 (Rice Ensembl Gene)	Adenine phosphoribosyltransferase 1
ARD1/ SIP2/ IDI1	GeneProduct	LOC_Os10g28350 (Rice Ensembl Gene)	1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 1 Ethylene induced
ARD2	GeneProduct	LOC_Os03g06620 (Rice Ensembl Gene)	1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 2; Also called IDI1 and SIP2A
ARF23/ARF1	GeneProduct	LOC_Os11g32110 (Rice Ensembl Gene)
ATP synthase	GeneProduct	LOC_Os03g17070 (Rice Ensembl Gene)
ATP synthetase alpha chain	GeneProduct	LOC_Os02g54624 (Rice Ensembl Gene)
Acyl carrier	GeneProduct	LOC_Os07g12150 (Rice Ensembl Gene)
Aldehyde oxidase and xanthine dehydrogenase	GeneProduct	LOC_Os03g31550 (Rice Ensembl Gene)
Amino acid permease	GeneProduct	LOC_Os07g04180 (Rice Ensembl Gene)
Amy1A	GeneProduct	LOC_Os02g52710 (Rice Ensembl Gene)
Amy2A	GeneProduct	LOC_Os06g49970 (Rice Ensembl Gene)	ABA-repressible and GA-inducible
Amy3A	GeneProduct	LOC_Os09g28400 (Rice Ensembl Gene)
Amy3B/Amy3C	GeneProduct	LOC_Os09g28420 (Rice Ensembl Gene)
Amy3D	GeneProduct	LOC_Os08g36910 (Rice Ensembl Gene)
Amy3E	GeneProduct	LOC_Os08g36900 (Rice Ensembl Gene)
Amy4A	GeneProduct	LOC_Os01g51754 (Rice Ensembl Gene)
Ankyrin-like protein	GeneProduct	LOC_Os09g17329 (Rice Ensembl Gene)	Iron transporter
Anthranilate Phosphoribosyltransferase	GeneProduct	LOC_Os03g03450 (Rice Ensembl Gene)
BBTI4/ pinA	GeneProduct	LOC_Os01g03340 (Rice Ensembl Gene)	Bowman-Birk type bran trypsin inhibitor
BEI/ Flo2	GeneProduct	LOC_Os06g51084 (Rice Ensembl Gene)	expression diminished during grain filling at high temperatures
BEIII	GeneProduct	LOC_Os06g26234 (Rice Ensembl Gene)
BEIIa/ SBEIIa	GeneProduct	LOC_Os04g33460 (Rice Ensembl Gene)	expression diminished during grain filling at high temperatures
BEIIb/SBEIIb/SBE-3/ RBE3/ RBE4	GeneProduct	LOC_Os02g32660 (Rice Ensembl Gene)	expression diminished during grain filling at high temperatures
BIERF2/ AP37	GeneProduct	LOC_Os01g58420 (Rice Ensembl Gene)
BP5	GeneProduct	LOC_Os01g18290 (Rice Ensembl Gene)
BT1-1	GeneProduct	LOC_Os05g07900 (Rice Ensembl Gene)
BT1-2	GeneProduct	LOC_Os02g10800 (Rice Ensembl Gene)
BTB/POZ domain containing protein	GeneProduct	LOC_Os10g29390 (Rice Ensembl Gene)	2-keto-3-deoxy-6-phosphogluconate aldolase
Bam 10	GeneProduct	LOC_Os03g22790 (Rice Ensembl Gene)
Bam 1	GeneProduct	LOC_Os10g41550 (Rice Ensembl Gene)
Bam 2	GeneProduct	LOC_Os07g35940 (Rice Ensembl Gene)
Bam 3	GeneProduct	LOC_Os07g35880 (Rice Ensembl Gene)
Bam 4	GeneProduct	LOC_Os07g47120 (Rice Ensembl Gene)
Bam 5	GeneProduct	LOC_Os10g32810 (Rice Ensembl Gene)
Bam 6	GeneProduct	LOC_Os09g39570 (Rice Ensembl Gene)
Bam 7	GeneProduct	LOC_Os03g04770 (Rice Ensembl Gene)
Bam 8	GeneProduct	LOC_Os01g13550 (Rice Ensembl Gene)
Bam 9	GeneProduct	LOC_Os02g03690 (Rice Ensembl Gene)
C3H1	GeneProduct	LOC_Os01g07930 (Rice Ensembl Gene)	Zinc finger CCCH domain-containing protein Glutaredoxin-related
CCT/B-box zinc finger	GeneProduct	LOC_Os02g49230 (Rice Ensembl Gene)
CDKA-1	GeneProduct	LOC_Os03g02680 (Rice Ensembl Gene)
CDKA-2	GeneProduct	LOC_Os02g03060 (Rice Ensembl Gene)
CDPK substrate	GeneProduct	LOC_Os07g25710 (Rice Ensembl Gene)	Phosphate starvation response regulator
CIN1	GeneProduct	LOC_Os02g33110 (Rice Ensembl Gene)
CIN3	GeneProduct	LOC_Os04g33720 (Rice Ensembl Gene)
CIN4	GeneProduct	LOC_Os01g73580 (Rice Ensembl Gene)
CIN5	GeneProduct	LOC_Os04g56930 (Rice Ensembl Gene)
CIN7/INV1	GeneProduct	LOC_Os09g08072 (Rice Ensembl Gene)
CKX2/ Gn1a	GeneProduct	LOC_Os01g10110 (Rice Ensembl Gene)	Cytokinin oxidase/dehydrogenase 2
CML18	GeneProduct	LOC_Os05g13580 (Rice Ensembl Gene)
CPL1	GeneProduct	LOC_Os07g10690 (Rice Ensembl Gene)	Seed Shattering
CR4	GeneProduct	LOC_Os03g43670 (Rice Ensembl Gene)	homology with Crinkly4
CRL1/ ARL1	GeneProduct	LOC_Os03g05510 (Rice Ensembl Gene)
Ca-binding EF-hand	GeneProduct	LOC_Os01g62740 (Rice Ensembl Gene)
Centromere protein	GeneProduct	LOC_Os03g20580 (Rice Ensembl Gene)
Chilling PP2A-B???	GeneProduct	LOC_Os05g40350 (Rice Ensembl Gene)
Complex 1L	GeneProduct	LOC_Os06g50000 (Rice Ensembl Gene)	Assigned as Complex 1L by Nemeth D and Hanumappa M (10/21/2010) complex 1 family protein-like (LYR family)
CycA1-1	GeneProduct	LOC_Os01g13260 (Rice Ensembl Gene)
CycB1;1	GeneProduct	LOC_Os01g59120 (Rice Ensembl Gene)	Seed Shattering
CycD2-2	GeneProduct	LOC_Os07g42860 (Rice Ensembl Gene)
Cyp2	GeneProduct	LOC_Os02g02890 (Rice Ensembl Gene)
Cytochrome P450 Family protein	GeneProduct	LOC_Os10g08474 (Rice Ensembl Gene)	AP2 transcription factor
D-REP DOF ZFP	GeneProduct	LOC_Os03g07360 (Rice Ensembl Gene)
DAD1	GeneProduct	LOC_Os04g32550 (Rice Ensembl Gene)	Defender against cell death 1
DAHPS1	GeneProduct	LOC_Os03g27230 (Rice Ensembl Gene)	3-deoxy-D-arabino heptulosonate-7-phosphate synthase 1
DEK1	GeneProduct	LOC_Os02g48000 (Rice Ensembl Gene)
DEP	GeneProduct	LOC_Os11g29370 (Rice Ensembl Gene)	Haloacid dehalogenase-like hydrolase family protein
DIP1	GeneProduct	LOC_Os05g34070 (Rice Ensembl Gene)
DMAS1	GeneProduct	LOC_Os03g13390 (Rice Ensembl Gene)	Deoxymugineic acid synthase1
DNAJ/HSP40	GeneProduct	LOC_Os03g44620 (Rice Ensembl Gene)
DOF ZF	GeneProduct	LOC_Os02g49440 (Rice Ensembl Gene)
DPE2	GeneProduct	LOC_Os07g46790 (Rice Ensembl Gene)	Also called ALK
DPK4	GeneProduct	LOC_Os06g45300 (Rice Ensembl Gene)	Ser/thr/tyr kinase
DREB1B	GeneProduct	LOC_Os09g35010 (Rice Ensembl Gene)
DUF151	GeneProduct	LOC_Os01g50622 (Rice Ensembl Gene)
DUF584	GeneProduct	LOC_Os05g45450 (Rice Ensembl Gene)
DUF630/DUF632 bZIP	GeneProduct	LOC_Os10g41310 (Rice Ensembl Gene)	Symbol assigned by Nemeth D and Hanumappa M (08/19/2010)
Delta-COP	GeneProduct	LOC_Os01g61710 (Rice Ensembl Gene)	Delta coatamer
Disease resistance-like	GeneProduct	LOC_Os12g40490 (Rice Ensembl Gene)	LIM domain-containing protein, putative, expressed
Du1	GeneProduct	LOC_Os10g35550 (Rice Ensembl Gene)	dull endosperm-1
Dynamin	GeneProduct	LOC_Os06g13820 (Rice Ensembl Gene)
E3-Ubi Ligase	GeneProduct	LOC_Os05g47780 (Rice Ensembl Gene)
EBP89	GeneProduct	LOC_Os03g08460 (Rice Ensembl Gene)	Also called EREBP1
EF 1-gamma 3	GeneProduct	LOC_Os06g37440 (Rice Ensembl Gene)	eEF-1B gamma 3
EF-1-delta 1	GeneProduct	LOC_Os07g42300 (Rice Ensembl Gene)	EF-1B beta 1, EF-1-beta
EF-1-gamma	GeneProduct	LOC_Os02g12800 (Rice Ensembl Gene)	eEF-1G
EIL1	GeneProduct	LOC_Os03g20780 (Rice Ensembl Gene)
ENOD93-1	GeneProduct	LOC_Os06g05010 (Rice Ensembl Gene)
ERG3	GeneProduct	LOC_Os04g44870 (Rice Ensembl Gene)	RPP16
EXPB2	GeneProduct	LOC_Os10g40710 (Rice Ensembl Gene)
EXPB4	GeneProduct	LOC_Os10g40730 (Rice Ensembl Gene)	Beta-expansin-4
Expressed Protein	GeneProduct	LOC_Os03g56940 (Rice Ensembl Gene)
FBK21	GeneProduct	LOC_Os10g21930 (Rice Ensembl Gene)	F-box domain and kelch repeat containing protein
FBL60	GeneProduct	LOC_Os12g33230 (Rice Ensembl Gene)	Leucine rich repeat
FBO10	GeneProduct	LOC_Os11g34460 (Rice Ensembl Gene)	Adagio-like protein 3 Cytochrome P450
FERTILLIN	GeneProduct	LOC_Os06g01650 (Rice Ensembl Gene)
Fibrillin	GeneProduct	LOC_Os09g04790 (Rice Ensembl Gene)
Flavin containing monooxygenase 3-like	GeneProduct	LOC_Os09g37620 (Rice Ensembl Gene)	Serine/threonine protein kinase
Flavin-containing monooxygenase	GeneProduct	LOC_Os01g15540 (Rice Ensembl Gene)
Fructose-6-phosphate 1-phosphotransferase	GeneProduct	LOC_Os08g25720 (Rice Ensembl Gene)
GAMYB	GeneProduct	LOC_Os01g59660 (Rice Ensembl Gene)	regulates GA induction of Amy2A
GB1/SSA1	GeneProduct	LOC_Os05g41970 (Rice Ensembl Gene)	26 kDa alpha globulin
GB2	GeneProduct	LOC_Os03g57960 (Rice Ensembl Gene)	Globulin 2
GBSSII	GeneProduct	LOC_Os07g22930 (Rice Ensembl Gene)	Also called ALK
GDSL-like Lipase/Acylhydrolase protein	GeneProduct	LOC_Os10g05088 (Rice Ensembl Gene)	SGNH_plant_lipase
GF14-e/ GID2	GeneProduct	LOC_Os02g36974 (Rice Ensembl Gene)
GF14A/ WIN2	GeneProduct	LOC_Os08g37490 (Rice Ensembl Gene)	WIN2, WIP2
GF14B	GeneProduct	LOC_Os04g38870 (Rice Ensembl Gene)
GF14F	GeneProduct	LOC_Os03g50290 (Rice Ensembl Gene)	G-box factor 14-3-3 f
GF14c	GeneProduct	LOC_Os08g33370 (Rice Ensembl Gene)
GIF1/ CIN2	GeneProduct	LOC_Os04g33740 (Rice Ensembl Gene)
GLN1-1	GeneProduct	LOC_Os02g50240 (Rice Ensembl Gene)	Glutamine synthetase cytosolic isozyme 1-1, also called RGS28 and GS1;1
GLUB4	GeneProduct	LOC_Os02g16830 (Rice Ensembl Gene)
GPT-A	GeneProduct	LOC_Os05g07670 (Rice Ensembl Gene)	Assigned as GPT-A by Nemeth D and Hanumappa M (10/21/2010)
GPT1	GeneProduct	LOC_Os08g08840 (Rice Ensembl Gene)
GPT2-3	GeneProduct	LOC_Os07g33910 (Rice Ensembl Gene)
GPT2-B	GeneProduct	LOC_Os01g07310 (Rice Ensembl Gene)	Assigned as GPT-B by Nemeth D and Hanumappa M (10/21/2010)
GS3	GeneProduct	C6L686 (Rice Ensembl Gene)	Grain Size 3 QTL AB488612–AB48866/ BAH89242
GTP cyclohydrolase	GeneProduct	LOC_Os05g38570 (Rice Ensembl Gene)	GTP cyclohydrolase II/3,4-dihydroxy-2-butanone-4-phosphate synthase
GW2	GeneProduct	LOC_Os02g14720 (Rice Ensembl Gene)	encodes a RING protein with E3 ubiquitin ligase activity
GW5	GeneProduct	B3IXB4 (Rice Ensembl Gene)	Grain Width 5 QTL
Gal1	GeneProduct	LOC_Os10g35110 (Rice Ensembl Gene)
Ghd7	GeneProduct	LOC_Os07g15770 (Rice Ensembl Gene)	yield potential
GluA-1	GeneProduct	LOC_Os01g55690 (Rice Ensembl Gene)
GluA-2	GeneProduct	LOC_Os10g26060 (Rice Ensembl Gene)
GluA-3	GeneProduct	LOC_Os03g31360 (Rice Ensembl Gene)
GluB-1A	GeneProduct	LOC_Os02g15169 (Rice Ensembl Gene)	UniProt ID: P14323
Glycosyl hydrolases	GeneProduct	LOC_Os11g27400 (Rice Ensembl Gene)	Chitinase
HAD-like	GeneProduct	LOC_Os03g16670 (Rice Ensembl Gene)
HDS1	GeneProduct	LOC_Os02g39160 (Rice Ensembl Gene)	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 1
HMG1	GeneProduct	LOC_Os06g51220 (Rice Ensembl Gene)
HOX 22	GeneProduct	LOC_Os04g45810 (Rice Ensembl Gene)	In Cooper et al. 2003 protein sequence provided matches HOX 22, however it was named HOX6 (AF145730)
HOX6	GeneProduct	LOC_Os09g35910 (Rice Ensembl Gene)	Cooper et al. 2003 called this leucine zipper and misnamed HOX 22 as HOX 6 (22834)
HRGP-Q10PC8	GeneProduct	LOC_Os03g13560 (Rice Ensembl Gene)	Hydroxyproline-rich glycoprotein family protein-UniPret ID
HSP70	GeneProduct	LOC_Os12g14070 (Rice Ensembl Gene)
HSP90	GeneProduct	LOC_Os09g30418 (Rice Ensembl Gene)	Also called HSP81-2
Hydrolase, alpha/beta fold family protein-like	GeneProduct	LOC_Os02g19650 (Rice Ensembl Gene)	Iron/ascorbate oxidoreductases
Hypothetical Protein	GeneProduct	LOC_Os06g21400 (Rice Ensembl Gene)
Hypothetical protein	GeneProduct	LOC_Os03g43910 (Rice Ensembl Gene)
IAA1	GeneProduct	LOC_Os01g08320 (Rice Ensembl Gene)
IAA4	GeneProduct	LOC_Os01g18360 (Rice Ensembl Gene)
IAA9	GeneProduct	LOC_Os02g56120 (Rice Ensembl Gene)
IDEF1	GeneProduct	LOC_Os08g01090 (Rice Ensembl Gene)	IDE-binding factor 2
IDEF2	GeneProduct	LOC_Os05g35170 (Rice Ensembl Gene)	IDE-binding factor 2
IDI2	GeneProduct	LOC_Os11g11050 (Rice Ensembl Gene)	Initiation factor 2 subunit family protein
IDI4	GeneProduct	LOC_Os09g28050 (Rice Ensembl Gene)	asparate aminotransferase
IDS1/ MT4A	GeneProduct	LOC_Os12g38270 (Rice Ensembl Gene)
INV 1/CIN5	GeneProduct	LOC_Os09g08072 (Rice Ensembl Gene)
INV 2/ Vin 1	GeneProduct	LOC_Os04g45290 (Rice Ensembl Gene)
INV 3/ Vin 2	GeneProduct	LOC_Os02g01590 (Rice Ensembl Gene)
IRT1	GeneProduct	LOC_Os03g46470 (Rice Ensembl Gene)
ISA1/ SU1	GeneProduct	LOC_Os08g40930 (Rice Ensembl Gene)	expression diminished during grain filling at high temperatures
ISA2	GeneProduct	LOC_Os05g32710 (Rice Ensembl Gene)
ISA3	GeneProduct	LOC_Os09g29404 (Rice Ensembl Gene)
Importin subunit alpha-1a	GeneProduct	LOC_Os01g14950 (Rice Ensembl Gene)	NLS RECEPTOR
Integrase	GeneProduct	LOC_Os11g11694 (Rice Ensembl Gene)
Isocitrate lyase	GeneProduct	LOC_Os07g34520 (Rice Ensembl Gene)
JA carboxyl methyltransferase	GeneProduct	LOC_Os06g22440 (Rice Ensembl Gene)	Putative S-adenosyl-L-methionine Subtilisin N-terminal Region
JAB1/ CSN5	GeneProduct	LOC_Os04g56070 (Rice Ensembl Gene)
Jasmonate-induced protein	GeneProduct	LOC_Os12g09700 (Rice Ensembl Gene)	Histone H3 (Lys9) methyltransferase
KOB1	GeneProduct	LOC_Os02g57240 (Rice Ensembl Gene)	Probable voltage-gated potassium channel subunit beta
KRP3	GeneProduct	LOC_Os11g40030 (Rice Ensembl Gene)
Keto acyl CoA thiolase	GeneProduct	LOC_Os02g57260 (Rice Ensembl Gene)
Kinesin	GeneProduct	LOC_Os03g43100 (Rice Ensembl Gene)
LEA 14-A	GeneProduct	LOC_Os05g50710 (Rice Ensembl Gene)
LPLA	GeneProduct	LOC_Os08g33810 (Rice Ensembl Gene)
LTPL109	GeneProduct	LOC_Os07g37385 (Rice Ensembl Gene)	Extensin_2
Lea3	GeneProduct	LOC_Os05g46480 (Rice Ensembl Gene)	Interaction with TRAB1 and VP1 by orthology to H vulgare ABA related
Luc7-like 2	GeneProduct	LOC_Os03g62640 (Rice Ensembl Gene)	Sarcoplasmic reticulum
MADS 13	GeneProduct	LOC_Os12g10540 (Rice Ensembl Gene)	Also called MAF1
MADS 14	GeneProduct	LOC_Os03g54160 (Rice Ensembl Gene)	Also called AGL10, RAP1B
MADS 15	GeneProduct	LOC_Os07g01820 (Rice Ensembl Gene)	Also called RAP1A
MADS 16	GeneProduct	LOC_Os06g49840 (Rice Ensembl Gene)
MADS 18	GeneProduct	LOC_Os07g41370 (Rice Ensembl Gene)	Also called MADS 28
MADS 1	GeneProduct	LOC_Os03g11614 (Rice Ensembl Gene)	Also called LHS1
MADS 22	GeneProduct	LOC_Os02g52340 (Rice Ensembl Gene)	Also called RMD1
MADS 2	GeneProduct	LOC_Os01g66030 (Rice Ensembl Gene)
MADS 3	GeneProduct	LOC_Os01g10504 (Rice Ensembl Gene)	Also called RAG
MADS 47	GeneProduct	LOC_Os03g08754 (Rice Ensembl Gene)	Also called MDP
MADS 56	GeneProduct	LOC_Os10g39130 (Rice Ensembl Gene)
MADS 57	GeneProduct	LOC_Os02g49840 (Rice Ensembl Gene)
MADS 5	GeneProduct	LOC_Os06g06750 (Rice Ensembl Gene)
MADS 6	GeneProduct	LOC_Os02g45770 (Rice Ensembl Gene)	Also called MFO1
MADS 8	GeneProduct	LOC_Os09g32948 (Rice Ensembl Gene)	Also called MADS 24
MADS box interactor-like	GeneProduct	LOC_Os02g54080 (Rice Ensembl Gene)
MADS17	GeneProduct	LOC_Os04g49150 (Rice Ensembl Gene)	Also called NMADS3 and RMADS213
MADS7/45	GeneProduct	LOC_Os08g41950 (Rice Ensembl Gene)	also called MADS 45, AGL6, M79
MAPK2	GeneProduct	LOC_Os02g05480 (Rice Ensembl Gene)	UniProt:MAPK2, BIMK1, MAP3, MAPK5, MPK3, MSRMK2
MCM2	GeneProduct	LOC_Os11g29380 (Rice Ensembl Gene)
MPK3	GeneProduct	LOC_Os03g17700 (Rice Ensembl Gene)	UniProt:MPK3, BIMK1, MAP3, MAPK2, MPK5
MT2b	GeneProduct	LOC_Os05g02070 (Rice Ensembl Gene)
MTN	GeneProduct	LOC_Os06g02220 (Rice Ensembl Gene)	Methylthioadenosine/S-adenosyl homocysteine nucleosidase
Mal d 1-associated protein	GeneProduct	LOC_Os01g56470 (Rice Ensembl Gene)
Male sterility protein/tetratricopeptide repeat	GeneProduct	LOC_Os05g43040 (Rice Ensembl Gene)
Mitrochondrial carrier	GeneProduct	LOC_Os03g11510 (Rice Ensembl Gene)
MtN3 (transmembrane)	GeneProduct	LOC_Os05g12320 (Rice Ensembl Gene)
Myosin like	GeneProduct	LOC_Os03g16120 (Rice Ensembl Gene)
Myosin like	GeneProduct	LOC_Os05g02820 (Rice Ensembl Gene)
NA-INV1	GeneProduct	LOC_Os03g20020 (Rice Ensembl Gene)	Neutral/alkaline invertase 1 Assigned as NA-INV1 by Nemeth D and Hanumappa M (10/21/2010)
NA-INV2	GeneProduct	LOC_Os01g22900 (Rice Ensembl Gene)	Neutral/alkaline invertase 2 Assigned as NA-INV1 by Nemeth D and Hanumappa M (10/21/2010)
NA-INV3	GeneProduct	LOC_Os02g32730 (Rice Ensembl Gene)	Neutral/alkaline invertase 3 Assigned as NA-INV1 by Nemeth D and Hanumappa M (10/21/2010)
NAAT1	GeneProduct	LOC_Os02g20360 (Rice Ensembl Gene)	nicotianamine aminotransferase
NAC 10	GeneProduct	LOC_Os11g03300 (Rice Ensembl Gene)
NAC075	GeneProduct	LOC_Os01g09550 (Rice Ensembl Gene)
NAC2	GeneProduct	LOC_Os02g57650 (Rice Ensembl Gene)
NAC4/ NAC68	GeneProduct	LOC_Os01g60020 (Rice Ensembl Gene)
NAC5/ NAC71	GeneProduct	LOC_Os11g08210 (Rice Ensembl Gene)	ABA related
NAC6/ NAC48/ SNAC2	GeneProduct	LOC_Os01g66120 (Rice Ensembl Gene)	ABA-related
NADPH G-3-P dh	GeneProduct	LOC_Os08g34210 (Rice Ensembl Gene)
NAS1	GeneProduct	LOC_Os03g19427 (Rice Ensembl Gene)	NA synthase gene 1
NAS2	GeneProduct	LOC_Os03g19420 (Rice Ensembl Gene)	NA synthase gene 2
NB-ARC domain protein	GeneProduct	LOC_Os11g34880 (Rice Ensembl Gene)	Jacalin
Nuclear TF	GeneProduct	LOC_Os06g14190 (Rice Ensembl Gene)
OEP33	GeneProduct	LOC_Os01g31690 (Rice Ensembl Gene)	No symbol in gramene so OEP33 was assigned. 33kDa oxygen evolving protein of photosystem II
OSE2-like	GeneProduct	LOC_Os05g36160 (Rice Ensembl Gene)
OSE2	GeneProduct	LOC_Os01g64730 (Rice Ensembl Gene)	bZIP transcription factor domain containing protein
Oligopeptide transporter 3	GeneProduct	LOC_Os03g54000 (Rice Ensembl Gene)	Isp4-like
Oryzain alpha Protease	GeneProduct	LOC_Os04g55650 (Rice Ensembl Gene)
Oryzain gamma Protease	GeneProduct	LOC_Os09g27030 (Rice Ensembl Gene)
OsAK	GeneProduct	LOC_Os02g41590 (Rice Ensembl Gene)	Adenosine kinase
OsCCP	GeneProduct	LOC_Os12g08760 (Rice Ensembl Gene)	Assigned as OsCCP by Nemeth D and Hanumappa M (10/21/2010) carboxyvinyl-carboxyphosphonate phosphorylmutase
OsEM	GeneProduct	LOC_Os05g28210 (Rice Ensembl Gene)
OsFBX237	GeneProduct	LOC_Os07g35050 (Rice Ensembl Gene)	Cdc2-related protein kinase
OsIAA13	GeneProduct	LOC_Os03g53150 (Rice Ensembl Gene)
OsLKR/SDH	GeneProduct	LOC_Os02g54254 (Rice Ensembl Gene)
OsPRP1	GeneProduct	LOC_Os10g05970 (Rice Ensembl Gene)	Proline rich protein
PBZ1	GeneProduct	LOC_Os12g36880 (Rice Ensembl Gene)
PCNA	GeneProduct	LOC_Os02g56130 (Rice Ensembl Gene)	Proliferating cell nuclear antigen expressed strongly in the shoot apical meristem
PGI-a	GeneProduct	LOC_Os09g29070 (Rice Ensembl Gene)
PGI-b	GeneProduct	LOC_Os06g14510 (Rice Ensembl Gene)
PHD Zn-finger	GeneProduct	LOC_Os11g12650 (Rice Ensembl Gene)
PHD zinc finger	GeneProduct	LOC_Os03g04980 (Rice Ensembl Gene)
PHOH	GeneProduct	LOC_Os01g63270 (Rice Ensembl Gene)	Also called ALK
PHOL	GeneProduct	LOC_Os03g55090 (Rice Ensembl Gene)
PHT4;3	GeneProduct	LOC_Os01g63290 (Rice Ensembl Gene)	Na+ dep inorg phosphate cotransporter
PK-Q84P71	GeneProduct	LOC_Os02g08530 (Rice Ensembl Gene)	Protein Kinase-UniProt ID
PK-Q84PB0	GeneProduct	LOC_Os05g50190 (Rice Ensembl Gene)	Protein Kinase-UniProt ID
PK-Q84PC8	GeneProduct	LOC_Os12g37570 (Rice Ensembl Gene)	Protein Kinase-UniProt ID
PK-Q9AUR3	GeneProduct	LOC_Os03g50390 (Rice Ensembl Gene)	Protein Kinase-UniProt ID
PP2A-3	GeneProduct	LOC_Os02g12580 (Rice Ensembl Gene)
PP2A-B-TAP46/42	GeneProduct	LOC_Os12g04290 (Rice Ensembl Gene)
PP2A1	GeneProduct	LOC_Os06g37660 (Rice Ensembl Gene)
PP2A2	GeneProduct	LOC_Os03g59060 (Rice Ensembl Gene)
PPDK1	GeneProduct	LOC_Os05g33570 (Rice Ensembl Gene)	CPDK1, PPDKB
PPDKA	GeneProduct	LOC_Os03g31750 (Rice Ensembl Gene)	Assigned as GPT-B by Nemeth D and Hanumappa M (10/21/2010)
PPDKB	GeneProduct	LOC_Os05g33570 (Rice Ensembl Gene)	Involved in grain filling
PPR bZIP	GeneProduct	LOC_Os05g40320 (Rice Ensembl Gene)	Symbol assigned by Nemeth D and Hanumappa M (08/19/2010)
PPROL 14 E	GeneProduct	LOC_Os05g26377 (Rice Ensembl Gene)	13 kDa Prolamin, also called PPROL 14, PPROL 4A, PPROL 7, PG5a, PROLM 8, PROLM 9, UniProt ID: Q95737
PROLM 24	GeneProduct	LOC_Os05g31070 (Rice Ensembl Gene)	16 kDa Prolamin
PROLM26	GeneProduct	LOC_Os07g10580 (Rice Ensembl Gene)	Prolamin precursor, also called RP5
PROLM28	GeneProduct	LOC_Os12g16890 (Rice Ensembl Gene)	Prolamin precursor, protein also called PPROL 17
PRP1	GeneProduct	LOC_Os05g13940 (Rice Ensembl Gene)
PUL/ RICFUJI	GeneProduct	LOC_Os04g08270 (Rice Ensembl Gene)	expression diminished during grain filling at high temperatures
PUP2	GeneProduct	LOC_Os06g46740 (Rice Ensembl Gene)
Pectinesterase	GeneProduct	LOC_Os07g02810 (Rice Ensembl Gene)
Phosphatidyl inositol kinase	GeneProduct	LOC_Os02g57660 (Rice Ensembl Gene)	Putative phosphatidylinositol-4-phosphate 5-kinase
Phosphoglucomutase	GeneProduct	LOC_Os05g48200 (Rice Ensembl Gene)
Phospholipase C	GeneProduct	LOC_Os07g49330 (Rice Ensembl Gene)
Photosystem I 20 kDa subunit II	GeneProduct	LOC_Os08g44680 (Rice Ensembl Gene)
Photosystem I RC subunit	GeneProduct	LOC_Os07g05480 (Rice Ensembl Gene)
Phragmoplast kinase	GeneProduct	LOC_Os04g28260 (Rice Ensembl Gene)
Pit	GeneProduct	LOC_Os01g05620 (Rice Ensembl Gene)
Plasma membrane ATPase	GeneProduct	LOC_Os04g56160 (Rice Ensembl Gene)
Porin-like	GeneProduct	LOC_Os03g10510 (Rice Ensembl Gene)
Pr1b	GeneProduct	LOC_Os01g28450 (Rice Ensembl Gene)
Protein Tyrosine Phoshatase	GeneProduct	LOC_Os08g44320 (Rice Ensembl Gene)
Pto kinase Interactor 1	GeneProduct	LOC_Os05g04520 (Rice Ensembl Gene)
Pumilio Family Protein	GeneProduct	LOC_Os12g09700 (Rice Ensembl Gene)	Leucine rich repeat
Putative BTB and TAZ domain protein	GeneProduct	LOC_Os01g66890 (Rice Ensembl Gene)
Putative GABA-specific permease	GeneProduct	LOC_Os01g71720 (Rice Ensembl Gene)	Amino acid/polyamine transporter
Putative IAA amidohydrolase	GeneProduct	LOC_Os03g62060 (Rice Ensembl Gene)
Putative MLA10	GeneProduct	LOC_Os11g16470 (Rice Ensembl Gene)	Ankyrin repeat
Putative UOS1	GeneProduct	LOC_Os06g49120 (Rice Ensembl Gene)	NAD(P)-binding/Rossman fold
Putative cytochrome P450	GeneProduct	LOC_Os09g10340 (Rice Ensembl Gene)
Putative hioredoxin 5	GeneProduct	LOC_Os02g53400 (Rice Ensembl Gene)	Translational repressor MPT5/PUF4
Putative phosphomannomutase	GeneProduct	LOC_Os06g28194 (Rice Ensembl Gene)	Soluble epoxide hydrolase
Putative serine/threonine-specific protein	GeneProduct	LOC_Os09g39320 (Rice Ensembl Gene)	Multitransmembrane protein
Putative taxane 10-beta-hydroxylase	GeneProduct	LOC_Os07g33480 (Rice Ensembl Gene)	Glutamate synthase cytochrome P450 domain containing protein
Pyrrolidone-Carboxylpeptidase	GeneProduct	LOC_Os03g25270 (Rice Ensembl Gene)
RA/ bhlh13	GeneProduct	LOC_Os04g47080 (Rice Ensembl Gene)	seed coat color, endosperm color
RACK1A	GeneProduct	LOC_Os01g49290 (Rice Ensembl Gene)	Also called GPB-LR/ RWD
RAD6	GeneProduct	LOC_Os03g57790 (Rice Ensembl Gene)	transcripts of both OsRad6 and OsSgt1 were found to be strongly expressed in the proliferating tissues such SAM
RAG-1	GeneProduct	LOC_Os09g16260 (Rice Ensembl Gene)	RISBZ1 + RPBF activated the RAG-1 promoter greater than RPBF alone, though RISBZ1 did not independently affect promoter activity
RALF24	GeneProduct	LOC_Os11g26340 (Rice Ensembl Gene)	Rapid ALkalinization Factor
RAR1	GeneProduct	LOC_Os02g33180 (Rice Ensembl Gene)
RAV1-like	GeneProduct	LOC_Os01g49830 (Rice Ensembl Gene)
RB/ bhlh165	GeneProduct	LOC_Os01g39580 (Rice Ensembl Gene)	seed coat color, endosperm color
RCAA1	GeneProduct	LOC_Os11g47970 (Rice Ensembl Gene)	RuBisCO activase large isoform
REB bZIP	GeneProduct	LOC_Os03g58250 (Rice Ensembl Gene)	Symbol assigned by Nemeth D and Hanumappa M (08/19/2010)
RIC1	GeneProduct	LOC_Os01g37800 (Rice Ensembl Gene)
RIR 1b	GeneProduct	LOC_Os05g48260 (Rice Ensembl Gene)
RISBZ1	GeneProduct	LOC_Os07g08420 (Rice Ensembl Gene)	Functionaly redundant and compensatory expression between RISBZI and RPBF. Double Knock-Down mutant (KD-RISBZ1/KD-RPBF) caused most expression change in OsLKR/SDH
RPBF	GeneProduct	LOC_Os02g15350 (Rice Ensembl Gene)	Functionaly redundant and compensatory expression between RISBZI and RPBF except for OsLKR/SDH double KD mutant (KD-RISBZ1/KD-RPBF) caused most expression change
RPK-TMK1 precursor	GeneProduct	LOC_Os04g58910 (Rice Ensembl Gene)	receptor protein kinase TMK1 precursor
RPS20	GeneProduct	LOC_Os06g04290 (Rice Ensembl Gene)	P35686
RSR1	GeneProduct	LOC_Os01g40280 (Rice Ensembl Gene)
RUBQ1	GeneProduct	LOC_Os02g06640 (Rice Ensembl Gene)	Also called Polyubiquitin 6 Also given LOC_Os05g42424 which is not complete
Rab21	GeneProduct	LOC_Os11g26790 (Rice Ensembl Gene)	ABA related water stress + cold stress
Rac1	GeneProduct	LOC_Os01g12900 (Rice Ensembl Gene)
Rcd1-like protein	GeneProduct	LOC_Os04g52340 (Rice Ensembl Gene)	Also given LOC_Os07g37790 and LOC_Os03g57130
Receptor Kinase	GeneProduct	LOC_Os08g28710 (Rice Ensembl Gene)
Receptor protein kinase	GeneProduct	LOC_Os02g43290 (Rice Ensembl Gene)
Retrotransposon protein	GeneProduct	LOC_Os12g24050 (Rice Ensembl Gene)	Sulfotransferase
Ring Finger	GeneProduct	LOC_Os01g01390 (Rice Ensembl Gene)
Ring ZF	GeneProduct	LOC_Os04g48050 (Rice Ensembl Gene)
S-REP DOF ZFP	GeneProduct	LOC_Os04g47990 (Rice Ensembl Gene)
SAL1	GeneProduct	LOC_Os06g43590 (Rice Ensembl Gene)
SAM dependent carboxyl methyltransferase	GeneProduct	LOC_Os02g06770 (Rice Ensembl Gene)
SAP11	GeneProduct	LOC_Os08g39450 (Rice Ensembl Gene)	Also called ZFP60
SCP40	GeneProduct	LOC_Os07g46350 (Rice Ensembl Gene)	Serine carboxypesidase
SCR-like	GeneProduct	LOC_Os02g45760 (Rice Ensembl Gene)	Scarecrow transcriptional regulator-like protein
SET domain protein	GeneProduct	LOC_Os02g40770 (Rice Ensembl Gene)	histone-lysine N-methyltransferase
SGT1	GeneProduct	LOC_Os01g43540 (Rice Ensembl Gene)	Responds to salicylic acid in chemically induced biotic response
SK2/ BADH2/ BAD2	GeneProduct	LOC_Os08g32870 (Rice Ensembl Gene)	SCENTED KERNEL 2 (fragrance) betaine-aldehyde dehydrogenase 2
SNAC1	GeneProduct	LOC_Os03g60080 (Rice Ensembl Gene)
SPK/ CDPK1	GeneProduct	LOC_Os10g39420 (Rice Ensembl Gene)	required for storage product accumulation during seed development seed-specific protein kinase
SPP1	GeneProduct	LOC_Os01g27880 (Rice Ensembl Gene)	sucrose-phosphatase 1
SPP2	GeneProduct	LOC_Os02g05030 (Rice Ensembl Gene)	sucrose-phosphatase 2
SPS-Hv	GeneProduct	LOC_Os02g09170 (Rice Ensembl Gene)	sucrose-phosphate synthase-Hordeum vulgare= named after table III on Yamakawa et al. (2007)
SPS-O spp	GeneProduct	LOC_Os08g20660 (Rice Ensembl Gene)	sucrose-phosphate synthase-Oncidium spp= named after table III on Yamakawa et al. (2007)
SPS-So	GeneProduct	LOC_Os06g43630 (Rice Ensembl Gene)	sucrose-phosphate synthase-Saccharum officinarum= named after table III on Yamakawa et al. (2007)
SPS-Zm	GeneProduct	LOC_Os06g42824 (Rice Ensembl Gene)	sucrose-phosphate synthase-Zea mays= named after table III on Yamakawa et al. (2007)
SSA2	GeneProduct	LOC_Os03g55730 (Rice Ensembl Gene)	10 kDa prolamin precursor
SSII-2/ SSIIb/ SS2	GeneProduct	LOC_Os02g51070 (Rice Ensembl Gene)	Also called ALK
SSII-3/ SSIIa/ ALK	GeneProduct	LOC_Os06g12450 (Rice Ensembl Gene)	expression diminished during grain filling at high temperatures
SSIIIa/ Flo5	GeneProduct	LOC_Os08g09230 (Rice Ensembl Gene)	expression diminished during grain filling at high temperatures
SSIIIb	GeneProduct	LOC_Os04g53310 (Rice Ensembl Gene)	Also called ALK
SSIIc	GeneProduct	LOC_Os10g30156 (Rice Ensembl Gene)	Also called ALK
SSI	GeneProduct	LOC_Os06g06560 (Rice Ensembl Gene)
SSIVa	GeneProduct	LOC_Os01g52250 (Rice Ensembl Gene)	Also called ALK
SSIVb	GeneProduct	LOC_Os05g45720 (Rice Ensembl Gene)	Also called ALK
SUS1/SuSy1/SS2	GeneProduct	LOC_Os03g28330 (Rice Ensembl Gene)	Sucrose synthase 1
SUS2/SuSy1/SS1	GeneProduct	LOC_Os06g09450 (Rice Ensembl Gene)	Sucrose synthase 2
SUS3/SuSy3/SS3	GeneProduct	LOC_Os07g42490 (Rice Ensembl Gene)	Sucrose synthase 3
SUT1	GeneProduct	LOC_Os03g07480 (Rice Ensembl Gene)
SUT2	GeneProduct	LOC_Os12g44380 (Rice Ensembl Gene)
SUT3	GeneProduct	LOC_Os10g26470 (Rice Ensembl Gene)
SUT4	GeneProduct	LOC_Os02g58080 (Rice Ensembl Gene)
SUT5	GeneProduct	LOC_Os02g36700 (Rice Ensembl Gene)
Sci2	GeneProduct	LOC_Os01g42860 (Rice Ensembl Gene)
Sdr4	GeneProduct	LOC_Os07g39700 (Rice Ensembl Gene)
Ser/thr PK	GeneProduct	LOC_Os06g04880 (Rice Ensembl Gene)
Serine protease	GeneProduct	LOC_Os04g45910 (Rice Ensembl Gene)	Os04g0542900,
Shaggy kinase	GeneProduct	LOC_Os10g37740 (Rice Ensembl Gene)
Smt1-1	GeneProduct	LOC_Os07g10600 (Rice Ensembl Gene)	Cycloartenol-C24-methyltransferase
Stress-related-like (SRL)	GeneProduct	LOC_Os07g47510 (Rice Ensembl Gene)
SuSy4	GeneProduct	LOC_Os03g22120 (Rice Ensembl Gene)	Sucrose synthase 4
SuSy5	GeneProduct	LOC_Os02g58480 (Rice Ensembl Gene)	Sucrose synthase 5
SuSy6	GeneProduct	LOC_Os04g24430 (Rice Ensembl Gene)	Sucrose synthase 6
Sub9	GeneProduct	LOC_Os01g58290 (Rice Ensembl Gene)	Amino acid transporters
TATC	GeneProduct	LOC_Os01g31680 (Rice Ensembl Gene)
THF1	GeneProduct	LOC_Os07g37250 (Rice Ensembl Gene)	Inositol phosphatase
TPR-containing protein kinase	GeneProduct	LOC_Os03g61010 (Rice Ensembl Gene)	Putative protein kinase
TRAB1/ ABF5	GeneProduct	LOC_Os08g36790 (Rice Ensembl Gene)	Interaction with Wsi18 and Lea3 by orthology to H vulgare bZIP transcription factor TRAB1, ABA RESPONSIVE ELEMENT 1=ABA1
TRNA intron endonuclease	GeneProduct	LOC_Os11g38930 (Rice Ensembl Gene)	catalytic C-terminal domain containing protein
TUBB3/ RTUB-2	GeneProduct	LOC_Os06g46000 (Rice Ensembl Gene)	Tubulin beta-3 chain
Terpene cyclases	GeneProduct	LOC_Os04g27190 (Rice Ensembl Gene)
Thioredoxin-like	GeneProduct	LOC_Os04g57310 (Rice Ensembl Gene)	thiol-disulphide oxidoreductase DCC
Tyrosine kinase	GeneProduct	LOC_Os11g15340 (Rice Ensembl Gene)	SAM dependent carboxyl methyltransferase
U2 snRNP	GeneProduct	LOC_Os11g41820 (Rice Ensembl Gene)
UDP-glucosyl transferase	GeneProduct	LOC_Os04g12960 (Rice Ensembl Gene)
UGP	GeneProduct	LOC_Os02g02550 (Rice Ensembl Gene)
UGP1	GeneProduct	LOC_Os09g38030 (Rice Ensembl Gene)
UGP2	GeneProduct	LOC_Os02g02560 (Rice Ensembl Gene)
USP1	GeneProduct	LOC_Os07g47620 (Rice Ensembl Gene)	ETFP adenine nucleotide
Ubiquitin protein	GeneProduct	LOC_Os09g31031 (Rice Ensembl Gene)
Ubiquitin proteinase	GeneProduct	LOC_Os02g43760 (Rice Ensembl Gene)	ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed
Unknown-Q0J831	GeneProduct	LOC_Os08g04580 (Rice Ensembl Gene)	Thioredoxin
Unknown-Q84P68	GeneProduct	LOC_Os04g53350 (Rice Ensembl Gene)	Cooper 31122 ID
Unknown-Q84P79	GeneProduct	LOC_Os09g38090 (Rice Ensembl Gene)
Unknown-Q84P81	GeneProduct	LOC_Os05g06330 (Rice Ensembl Gene)
Unknown-Q84P82	GeneProduct	LOC_Os10g30450 (Rice Ensembl Gene)	Unknown-UniProt ID
Unknown-Q84PA0	GeneProduct	LOC_Os04g41910 (Rice Ensembl Gene)
Unknown-Q9AUW2	GeneProduct	LOC_Os03g55130 (Rice Ensembl Gene)
Unknown-Q9SNJ0	GeneProduct	LOC_Os03g03860 (Rice Ensembl Gene)	Unknown-UniProt ID
Unknown	GeneProduct	LOC_Os01g12080 (Rice Ensembl Gene)
Unknown	GeneProduct	LOC_Os04g57020 (Rice Ensembl Gene)
Unknown	GeneProduct	LOC_Os10g40260 (Rice Ensembl Gene)
VIP1-like	GeneProduct	LOC_Os06g02240 (Rice Ensembl Gene)
VP1 (oat)	GeneProduct
VP1	GeneProduct	LOC_Os01g68370 (Rice Ensembl Gene)	Interaction with Wsi18 and Lea3 by orthology to H vulgare ABA-related Seed dormancy Interaction with Wsi18 and Lea3 by orthology to H vulgare
VP2-like	GeneProduct	LOC_Os03g05750 (Rice Ensembl Gene)
Vacuolar ATP synthase subunit C	GeneProduct	LOC_Os05g51530 (Rice Ensembl Gene)
WRKY 51	GeneProduct	LOC_Os04g21950 (Rice Ensembl Gene)	ABA-inducible & GA-repressible WRKY 51 by itself also represses activation of Amy2A by GAMYB
WRKY 55/ WRKY 31	GeneProduct	LOC_Os03g20550 (Rice Ensembl Gene)
WRKY 71	GeneProduct	LOC_Os02g08440 (Rice Ensembl Gene)	ABA-inducible & GA-repressible Interaction between WRKY 51 and 71 enhances the binding affinity of WRKY71 to the Amy32b promoter WRKY 71 by itself also represses activation of Amy2A by GAMYB
Wsi18	GeneProduct	LOC_Os01g50910 (Rice Ensembl Gene)	Interaction with TRAB1 and VP1 by orthology to H vulgare ABA and GA induced water stress + cold stress member of the group 3 Lea family Wsi18 promoter is active in the whole grain
Wx/Wx1/GBSSI	GeneProduct	LOC_Os06g04200 (Rice Ensembl Gene)	30% less pre-mRNA in du1 mutant line Granule-bound starch synthase expression diminished during grain filling at high temperatures
XA7/RGA1	GeneProduct	LOC_Os05g26890 (Rice Ensembl Gene)	G-alpha protein also called GPA1/D1/GA1
YSL15	GeneProduct	LOC_Os02g43410 (Rice Ensembl Gene)	YELLOW STRIPE LIKE 15
YSL2	GeneProduct	LOC_Os02g43370 (Rice Ensembl Gene)	yellow stripe 1-like
ZFP179/ ZOS1-15	GeneProduct	LOC_Os01g62190 (Rice Ensembl Gene)	Salt-stress ABA related
ZIP-1a	GeneProduct	LOC_Os12g13170 (Rice Ensembl Gene)
Zinc finger-like	GeneProduct	LOC_Os01g40990 (Rice Ensembl Gene)
b-1,3-Glucanase	GeneProduct	LOC_Os03g25790 (Rice Ensembl Gene)
bHLH-tf	GeneProduct	LOC_Os01g14110 (Rice Ensembl Gene)	Assigned as bHLH-tf by Nemeth D and Hanumappa M (10/21/2010)
bHLH60	GeneProduct	LOC_Os08g04390 (Rice Ensembl Gene)	Helix-loop-helix TF
bZIP	GeneProduct	LOC_Os11g06170 (Rice Ensembl Gene)
bhlh113	GeneProduct	LOC_Os10g40740 (Rice Ensembl Gene)	basic/helix-loop-helix 113
bhlh56/ IRO2	GeneProduct	LOC_Os01g72370 (Rice Ensembl Gene)	basic/helix-loop-helix 56
bip110	GeneProduct	LOC_Os06g08530 (Rice Ensembl Gene)	Putative ubiquitin-specific protease 23, BRI1-KD interacting protein 110
bip129	GeneProduct	LOC_Os08g40790 (Rice Ensembl Gene)
double-stranded beta-helix domain	GeneProduct	LOC_Os11g06370 (Rice Ensembl Gene)
eif(iso)4g	GeneProduct	LOC_Os04g42140 (Rice Ensembl Gene)
ferroportin1	GeneProduct	LOC_Os06g36450 (Rice Ensembl Gene)
flavonol synthase/flavanone 3-hydroxylase	GeneProduct	LOC_Os08g37456 (Rice Ensembl Gene)	2-oxoglutarate (2OG) - Fe(II) oxygenase
glycine-rich protein A3	GeneProduct	LOC_Os05g02780 (Rice Ensembl Gene)
homeobox domain containing protein	GeneProduct	LOC_Os06g39906 (Rice Ensembl Gene)
msrB-1	GeneProduct	LOC_Os03g24600 (Rice Ensembl Gene)	2 more IDs found on Gramene. Hence called 1, 2 and 3 to differentiate. LOC_Os06g27760=msrB-2, LOC_Os05g33510=msrB-3 (D Nemeth and M Hanumappa 08/17/2010). Type your comment here
prx61	GeneProduct	LOC_Os04g59190 (Rice Ensembl Gene)	Class III peroxidase 61
psbC /Photosystem II	GeneProduct	LOC_Os02g24632 (Rice Ensembl Gene)
rbcL	GeneProduct	LOC_Os10g21268 (Rice Ensembl Gene)
transposon protein, putative, CACTA, En/Spm sub-class	GeneProduct	LOC_Os01g09220 (Rice Ensembl Gene)

Annotated Interactions

No annotated interactions