Flowering Time Genes (Arabidopsis thaliana)
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Name | Type | Database reference | Comment |
---|---|---|---|
ABF1 | GeneProduct | AT1G49720 | Related to flowering; no pathway found. |
ABF2 | GeneProduct | AT1G45249 | Related to flowering; no pathway found. |
ABF3 | GeneProduct | AT4G34000 | Related to flowering; no pathway found. |
ABF4 | GeneProduct | AT3G19290 | |
ABH1 | GeneProduct | AT2G13540 | |
ABI5 | GeneProduct | AT2G36270 (TAIR) | |
AGAL2 | GeneProduct | AT5G08370 | MA Related to flowering; no pathway found. |
AGL14 | GeneProduct | AT4G11880 (TAIR) | |
AGL16 | GeneProduct | AT3G57230 | |
AGL17 | GeneProduct | AT2G22630 | |
AGL18 | GeneProduct | AT3G57390 | |
AGL19 | GeneProduct | AT4G22950 (TAIR) | |
AGL21 | GeneProduct | AT4G37940 | |
AGL24 | GeneProduct | AT4G24540 (TAIR) | |
AGL6 | GeneProduct | AT2G45650 (TAIR) | |
AGL74 | GeneProduct | AT1G48150 | |
AGL79 | GeneProduct | AT3G30260 (TAIR) | |
AP1 | GeneProduct | AT1G69120 | |
AP2 | GeneProduct | AT4G36920 (TAIR) | |
AREB3 | GeneProduct | AT3G56850 | |
ARP4 | GeneProduct | AT1G18450 | Related to flowering; no pathway found. |
ARP6 | GeneProduct | AT3G33520 | This denotes the SWR1 complex consisting of PIE1,SEF1 and ARP6 |
ARP6 | GeneProduct | AT3G33520 (TAIR) | Denotes the SWR1 complex consisting of PIE1,SEF1 and ARP6 |
ATC | GeneProduct | AT2G27550 (TAIR) | |
ATH1 | GeneProduct | AT4G32980 | |
ATMYB33 | GeneProduct | AT5G06100 (TAIR) | |
ATX1 | GeneProduct | AT2G31650 | |
ATbZIP15 | GeneProduct | AT5G42910 | Related to flowering; no pathway found. |
AtDOF1.3 | GeneProduct | AT1G26790 (TAIR) | |
AtDOF2.3 | GeneProduct | AT2G34140 (TAIR) | DL4430C |
B3H7I2 | GeneProduct | AT4G16810 (TAIR) | DL4430C |
BES1 | GeneProduct | AT1G19350 (TAIR) | BES1 recruits other transcriptional regulators such as ELF6 and REF6 to regulate target gene expression and coordinate BR responses with other developmental processes such as control of flowering time |
BFT | GeneProduct | AT5G62040 (TAIR) | |
BRM | GeneProduct | AT2G46020 (TAIR) | Partially redundant with autonomous pathway; acts through photoperiod pathway to suppress the floral promoters CO, FT and SOC1 and the floral repressor FLC. |
CAL | GeneProduct | AT1G26310 (TAIR) | |
CAM4 | GeneProduct | AT1G66410 | |
CCA1 | GeneProduct | AT2G46830 (TAIR) | |
CDF1 | GeneProduct | AT5G62430 (TAIR) | |
CDF2 | GeneProduct | AT5G39660 (TAIR) | |
CDF3 | GeneProduct | AT3G47500 (TAIR) | |
CDF5 | GeneProduct | At1g69570 (TAIR) | |
CHE | GeneProduct | AT5G08330 (TAIR) | |
CIB1 | GeneProduct | AT4G34530 (TAIR) | |
CK2B1 | GeneProduct | AT5G47080 | |
CK2B2 | GeneProduct | AT4G17640 | |
CK2B3 | GeneProduct | AT3G60250 | |
CK2B4 | GeneProduct | AT2G44680 | |
CK2alphaA | GeneProduct | AT5G67380 | |
CK2alphaB | GeneProduct | AT3G50000 | |
CK2alphaC | GeneProduct | AT2G23080 | |
CK2alphaCp | GeneProduct | AT2G23070 | |
CLF | Protein | AT2G23380 | Polycomb group protein |
CLF | GeneProduct | AT2G23380 (TAIR) | |
CO | GeneProduct | AT5G15840 (TAIR) | |
CO | GeneProduct | AT5G15840 (TAIR) | |
COL1 | GeneProduct | AT5G15850 (TAIR) | |
COL2 | GeneProduct | AT3G02380 (TAIR) | |
COL3 | GeneProduct | AT2G24790 (TAIR) | |
COL4 | GeneProduct | AT5G24930 (TAIR) | |
COL5 | GeneProduct | AT5G57660 (TAIR) | |
COL9 | GeneProduct | AT3G07650 (TAIR) | |
COP1 | GeneProduct | AT2G32950 (TAIR) | |
COR15a | GeneProduct | AT2G42540 (TAIR) | |
CRP | GeneProduct | AT4G00450 (TAIR) | Related to flowering; no pathway found. |
CRY1 | GeneProduct | AT4G08920 (TAIR) | |
CRY2 | GeneProduct | AT1G04400 (TAIR) | |
CSD2 | GeneProduct | AT2G28190 | |
CUL4 | GeneProduct | AT5G46210 (TAIR) | |
DCAF1 | GeneProduct | AT4G31160 (TAIR) | |
DDB1A | GeneProduct | AT4G05420 (TAIR) | |
DDB1B | GeneProduct | AT4G21100 (TAIR) | |
DDB2 | GeneProduct | AT5G58760 (TAIR) | |
DDF1 | GeneProduct | AT1G12610 | |
DDF2 | GeneProduct | AT1G63030 | |
DET1 | GeneProduct | AT4G10180 (TAIR) | |
DNF | GeneProduct | AT3G19140 (TAIR) | |
DOF1.5 | GeneProduct | AT1G29160 (TAIR) | |
DPBF2 | GeneProduct | AT3G44460 | |
EARLI1 | GeneProduct | AT4G12480 (TAIR) | bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin-like protein; Represses FLC, activates SOC1 and FT. |
EBS | GeneProduct | AT4G22140 | |
EBS | GeneProduct | AT4G22140 (TAIR) | ESD may function downstream of EBS |
EDF3 | GeneProduct | AT3G25730 | Related to flowering; no pathway found. |
EDM2 | GeneProduct | AT5G55390 | |
EEC | GeneProduct | AT3G21320 (TAIR) | DL4430C |
EEL | GeneProduct | AT2G41070 (TAIR) | DL4430C |
EFS | GeneProduct | AT1G77300 (TAIR) | |
ELF3 | GeneProduct | AT2G25930 | |
ELF4-L1 | GeneProduct | AT2G29950 (TAIR) | |
ELF4-L2 | GeneProduct | AT1G72630 (TAIR) | |
ELF4-L3 | GeneProduct | AT2G06255 (TAIR) | |
ELF4-L4 | GeneProduct | AT1G17455 (TAIR) | |
ELF4 | GeneProduct | AT2G40080 (TAIR) | |
ELF5 | GeneProduct | AT5G62640 | |
ELF6 | GeneProduct | AT5G04240 (TAIR) | ELF6 does not function in the same pathway as the FLC-dependent pathway but rather functions as an upstream repressor of the photoperiodic flowering pathway (PMID 15377760). BES1 recruits ELF6 and REF6, among others, to coordinate BR responses with other developmental processes such as control of flowering time |
ELF7 | GeneProduct | AT1G79730 | |
ELF8 | GeneProduct | AT2G06210 (TAIR) | |
ELF9 | GeneProduct | AT5G16260 (TAIR) | |
EMF2 | GeneProduct | AT5G51230 | |
EMF2 | GeneProduct | AT5G51230 (TAIR) | Polycomb group protein EMBRYONIC FLOWER2 was found to be epistatic to ICU2 |
ESD4 | GeneProduct | AT4G15880 (TAIR) | |
ESD7 | GeneProduct | AT1G08260 | |
ESD7 | GeneProduct | AT1G08260 (TAIR) | ESD7 represses in parallel the expression of both FT and SOC1. ESD7 affects the levels of H3 acetylation of FT promoter region |
ESP4 | GeneProduct | AT5G01400 | Forms a complex with FY |
F3L24.6 | GeneProduct | AT3G09190 (TAIR) | Regulates flowering time in Ws ecotype. Putative Lectin. |
FAS2 | GeneProduct | AT5G64630 (TAIR) | FAS2 may function downstream of ESD7 FAS2 and ICU2 interact with ESD7 in the control of flowering time |
FCA | GeneProduct | AT4G16280 (TAIR) | |
FD | GeneProduct | AT4G35900 |
|
FD | GeneProduct | AT4G35900 (TAIR) | |
FDP | GeneProduct | AT2G17770 (TAIR) | |
FES1 | GeneProduct | AT2G33835 (TAIR) | |
FIE1 | GeneProduct | AT3G20740 (TAIR) | |
FIE2 | GeneProduct | AT2G35670 | Similar to EMF2 |
FIO1 | GeneProduct | AT2G21070 (TAIR) | |
FKF1 | GeneProduct | AT1G68050 (TAIR) | |
FKF1 | GeneProduct | AT1G68050 (TAIR) | |
FLC | GeneProduct | AT5G10140 (TAIR) | |
FLC | GeneProduct | AT5G10140 (TAIR) | |
FLD | GeneProduct | AT3G10390 (TAIR) | |
FLK | GeneProduct | AT3G04610 (TAIR) | |
FLOWERING | GeneProduct | ||
FLX | GeneProduct | AT2G30120 | |
FPA | GeneProduct | AT2G43410 (TAIR) | |
FPF1 | GeneProduct | AT5G24860 (TAIR) | |
FRI-LP1 | GeneProduct | AT5G27220 (TAIR) | A_TM021B04.7/FRI-LP1 |
FRI | GeneProduct | AT4G00650 (TAIR) | |
FRL1 | GeneProduct | AT5G16320 (TAIR) | |
FRL2 | GeneProduct | AT1G31814 (TAIR) | |
FT | GeneProduct | AT1G65480 (TAIR) |
|
FT | GeneProduct | AT1G65480 (TAIR) | |
FT | GeneProduct | AT1G65480 (TAIR) | |
FUL | GeneProduct | AT5G60910 (TAIR) | |
FUS9 | GeneProduct | AT3G13550 (TAIR) | |
FVE | GeneProduct | AT2G19520 | |
FWA | GeneProduct | AT4G25530 | |
FWA | GeneProduct | AT4G25530 (TAIR) | |
FY | GeneProduct | AT5G13480 | |
FYPP3 | GeneProduct | AT1G50370 | |
GA1 | GeneProduct | AT4G02780 (TAIR) | |
GA | GeneProduct | Gibberellic Acid (TAIR) | GA1 catalyzes conversion of geranylgeranyl pyrophosphate (GGPP) to copalyl pyrophosphate (CPP) in gibberellin biosynthesis. |
GAI | GeneProduct | AT1G14920 | |
GBF4 | GeneProduct | AT1G03970 | Related to flowering; no pathway found. |
GI | GeneProduct | AT1G22770 (TAIR) | |
GID1A | GeneProduct | AT3G05120 (TAIR) | AFFINITY TO GA4; ASSOCIATED WITH GID1B AND C WHICH ARE FUNCTIONALLY REDUNDANT |
GID1B | GeneProduct | AT3G63010 (TAIR) | ASSOCIATED WITH GID1A AND C WHICH ARE FUNCTIONALLY REDUNDANT |
GID1C | GeneProduct | AT5G27320 (TAIR) | FUNCTIONALLY REDUNDANT TO GID1A AND B |
GRF1 | GeneProduct | AT4G09000 | |
GRF2 | GeneProduct | AT1G78300 (TAIR) | |
GRF3 | GeneProduct | AT5G38480 (TAIR) |
|
GRF3 | GeneProduct | AT5G38480 (TAIR) | |
GRF4 | GeneProduct | AT1G35160 (TAIR) | |
GRF5 | GeneProduct | AT5G16050 | |
GRF6 | GeneProduct | AT5G10450 (TAIR) | |
GRF7 | GeneProduct | AT3G02520 | |
GRF8 | GeneProduct | AT5G65430 | |
GRF9 | GeneProduct | AT2G42590 | |
HFR1 | GeneProduct | AT1G02340 | |
HOS1 | GeneProduct | AT2G39810 (TAIR) | |
HRB1 | GeneProduct | AT5G49230 (TAIR) | |
HUA2 | GeneProduct | AT5G23150 (TAIR) | |
ICU2 | GeneProduct | AT5G67100 (TAIR) | |
JMJ13 | GeneProduct | AT5G46910 (TAIR) | Based on Rice |
JMJ14 | GeneProduct | AT4G20400 (TAIR) | PKDM7B |
LD | GeneProduct | AT4G02560 (TAIR) | |
LDL1 | GeneProduct | AT1G62830 | |
LDL2 | GeneProduct | AT3G13682 (TAIR) | |
LFY | GeneProduct | AT5G61850 (TAIR) | |
LHCB3 | GeneProduct | AT5G54270 | LHCB*3 |
LHY | GeneProduct | AT1G01060 | |
LKP2 | GeneProduct | AT2G18915 (TAIR) | |
LUX | GeneProduct | AT3G46640 (TAIR) | |
LWD1 | GeneProduct | AT1G12910 (TAIR) | |
LWD2 | GeneProduct | AT3G26640 (TAIR) | |
MAF1 | GeneProduct | AT1G77080 | |
MAF2 | GeneProduct | AT5G65050 | |
MAF3 | GeneProduct | AT5G65060 | Considered "FLC-related" |
MAF4 | GeneProduct | AT5G65070 | Considered "FLC-related" |
MAF5 | GeneProduct | AT5G65080 | Considered "FLC-related" |
MBD9 | GeneProduct | AT3G01460 (TAIR) | |
MFT | GeneProduct | AT1G18100 (TAIR) | |
MSI1 | GeneProduct | AT5G58230 (TAIR) | |
NDPK2 | GeneProduct | AT5G63310 | INTERACTS WITH PRMT5 TO PROMOTE VEGETATIVE GROWTH |
NF-YA10 | GeneProduct | AT5G06510 (TAIR) | |
NF-YA1 | GeneProduct | AT5G12840 (TAIR) | |
NF-YA2 | GeneProduct | AT3G05690 (TAIR) | |
NF-YA3 | GeneProduct | AT1G72830 (TAIR) | |
NF-YA4 | GeneProduct | AT2G34720 (TAIR) | |
NF-YA5 | GeneProduct | AT1G54160 (TAIR) | |
NF-YA6 | GeneProduct | AT3G14020 (TAIR) | |
NF-YA7 | GeneProduct | AT1G30500 (TAIR) | |
NF-YA8 | GeneProduct | AT1G17590 (TAIR) | |
NF-YA9 | GeneProduct | AT3G20910 (TAIR) | |
NF-YB10 | GeneProduct | AT3G53340 (TAIR) | |
NF-YB11 | GeneProduct | AT2G27470 (TAIR) | |
NF-YB12 | GeneProduct | AT5G08190 (TAIR) | |
NF-YB13 | GeneProduct | AT5G23090 (TAIR) | |
NF-YB1 | GeneProduct | AT2G38880 (TAIR) | |
NF-YB2 | GeneProduct | AT5G47640 (TAIR) | |
NF-YB3 | GeneProduct | AT4G14540 (TAIR) | |
NF-YB4 | GeneProduct | AT1G09030 (TAIR) | |
NF-YB5 | GeneProduct | AT2G47810 (TAIR) | |
NF-YB6 | GeneProduct | AT5G47670 (TAIR) | |
NF-YB7 | GeneProduct | AT2G13570 (TAIR) | |
NF-YB8 | GeneProduct | AT2G37060 (TAIR) | |
NF-YB9 | GeneProduct | AT1G21970 (TAIR) | |
NF-YC10 | GeneProduct | AT1G07980 (TAIR) | |
NF-YC11 | GeneProduct | AT3G12480 (TAIR) | |
NF-YC12 | GeneProduct | AT5G38140 (TAIR) | |
NF-YC13 | GeneProduct | AT5G43250 (TAIR) | |
NF-YC1 | GeneProduct | AT3G48590 (TAIR) | |
NF-YC2 | GeneProduct | AT1G56170 (TAIR) | |
NF-YC3 | GeneProduct | AT1G54830 (TAIR) | |
NF-YC4 | GeneProduct | AT5G63470 (TAIR) | |
NF-YC5 | GeneProduct | AT5G50490 (TAIR) | |
NF-YC6 | GeneProduct | AT5G50480 (TAIR) | |
NF-YC7 | GeneProduct | AT5G50470 (TAIR) | |
NF-YC8 | GeneProduct | AT5G27910 (TAIR) | |
NF-YC9 | GeneProduct | AT1G08970 (TAIR) | |
NUC | GeneProduct | AT5G44160 (TAIR) | Reciprocal BLAST showed that NUC/IDD8 is homologous to rice ID1 |
PAF1 | GeneProduct | AT5G42790 (TAIR) | |
PAF2 | GeneProduct | AT1G47250 | Related to flowering; no pathway found. |
PCFS4 | GeneProduct | AT4G04885 | Forms a complex with FY |
PCL1 | GeneProduct | AT3G46640 (TAIR) | |
PEP | GeneProduct | AT4G26000 (TAIR) | |
PFT1 | GeneProduct | AT1G25540 (TAIR) | |
PHP | GeneProduct | AT3G22590 | |
PHYA | GeneProduct | AT1G09570 (TAIR) | |
PHYB | GeneProduct | AT2G18790 (TAIR) | |
PHYC | GeneProduct | AT5G35840 | |
PHYD | GeneProduct | AT4G16250 (TAIR) | |
PHYE | GeneProduct | AT4G18130 (TAIR) | |
PIE1 | GeneProduct | AT3G12810 | |
PIE1 | GeneProduct | AT3G12810 (TAIR) | This denotes the SWR1 complex consisting of PIE1,SEF1 and ARP6 |
PIF3 | GeneProduct | AT1G09530 (TAIR) | |
PIF4 | GeneProduct | AT2G43010 (TAIR) | |
PIF6 | GeneProduct | AT3G62090 (TAIR) | |
PIF7 | GeneProduct | AT5G61270 (TAIR) | |
PIL6 | GeneProduct | AT3G59060 (TAIR) | |
PIN1AT | GeneProduct | AT2G18040 | |
PKDM7C | GeneProduct | AT2G34880 (TAIR) | Due to high homology with PKDM7B, may also be involved with downregulation of FT/TSF |
PKDM7D | GeneProduct | AT1G08620 | Due to high homology with PKDM7B, may also be involved with downregulation of FT/TSF |
PRR3 | GeneProduct | AT5G60100 (TAIR) | |
PRR5 | GeneProduct | AT5G24470 (TAIR) | |
PRR7 | GeneProduct | AT5G02810 (TAIR) | |
PRR9 | GeneProduct | AT2G46790 (TAIR) | |
RAV1 | GeneProduct | AT1G13260 | RAV1 is an orthologue of TEM1 and TEM2 |
RAVL2 | GeneProduct | AT1G50680 (TAIR) | |
RAVL3 | GeneProduct | AT1G51120 (TAIR) | |
RBX1 | GeneProduct | AT5G20570 (TAIR) | |
REF6 | GeneProduct | AT3G48430 (TAIR) | In other pathway REF6 is listed as interacting with FT - please edit BES1 recruits other transcriptional regulators such as ELF6 and REF6 to regulate target gene expression and coordinate BR responses with other developmental processes such as control of flowering time |
RFI2 | GeneProduct | AT2G47700 (TAIR) | |
RGA1 | GeneProduct | AT2G01570 (TAIR) | |
RGL1 | GeneProduct | AT1G66350 (TAIR) | |
RGL2 | GeneProduct | AT3G03450 (TAIR) | |
RVE8 | GeneProduct | AT3G09600 (TAIR) |
|
SAL1 | GeneProduct | AT5G63980 | Related to flowering; no pathway found.
ExP; MA Bifunctional protein – regulates flowering time via its 3'(2'),5'-bisphosphate nucleotidase activity promotes flowering, possibly in the photoperiod pathway upstream of FT but downstream of phyB |
SDG25 | GeneProduct | AT5G42400 | |
SDG26 | GeneProduct | AT1G76710 | |
SEF | GeneProduct | AT5G37055 (TAIR) | Denotes the SWR1 complex consisting of PIE1,SEF1 and ARP6 |
SEP1 | GeneProduct | AT5G15800 | |
SEP3 | GeneProduct | AT1G24260 | |
SFR6 | GeneProduct | AT4G04920 | Related to flowering. SFR6 acts upstream of CCA1 GI and TOC1 |
SINAT5 | GeneProduct | AT5G53360 | |
SKB1 | GeneProduct | AT4G31120 | SKB1;Represses FLC by H4R3sme2 histone demethylation of promoter |
SLY1 | GeneProduct | AT4G24210 (TAIR) | |
SMZ | GeneProduct | AT3G54990 | |
SNZ | GeneProduct | AT2G39250 (TAIR) | |
SOC1 | GeneProduct | AT2G45660 (TAIR) | |
SOC1 | GeneProduct | AT2G45660 (TAIR) | AGL20 |
SPA1 | GeneProduct | AT2G46340 (TAIR) | |
SPA2 | GeneProduct | AT4G11110 (TAIR) | |
SPA3 | GeneProduct | AT3G15354 (TAIR) | |
SPA4 | GeneProduct | AT1G53090 (TAIR) | |
SPL3 | GeneProduct | AT2G33810 (TAIR) | |
SPL4 | GeneProduct | AT1G53160 | Most likely has overlapping roles with SPL3 |
SPL5 | GeneProduct | AT3G15270 | Most likely has overlapping roles with SPL3 |
SPL9 | GeneProduct | AT2G42200 | |
SPY | GeneProduct | AT3G11540 (TAIR) | |
SRR1 | GeneProduct | AT5G59560 (TAIR) | |
SRT2 | GeneProduct | AT5G09230 | |
SUF4 | GeneProduct | AT1G30970 (TAIR) | |
SUS4 | Protein | AT3G43190 | |
SVP | GeneProduct | AT2G22540 (TAIR) | |
SWN | GeneProduct | AT4G02020 | |
TEM1 | GeneProduct | AT1G25560 | |
TEM2 | GeneProduct | AT1G68840 | TEM2 is synonomous with RAV2 |
TFL1 | GeneProduct | AT5G03840 (TAIR) | |
TFL2 | GeneProduct | AT5G17690 | |
TFL2 | GeneProduct | AT5G17690 | |
TFL2 | GeneProduct | AT5G17690 (TAIR) | |
TIC | GeneProduct | AT3G22380 (TAIR) | |
TO BE MOVED into PATHWAY | GeneProduct | ||
TOC1 | GeneProduct | AT5G61380 (TAIR) | PRR1 |
TOE1 | GeneProduct | AT2G28550 (TAIR) | |
TOE2 | GeneProduct | AT5G60120 (TAIR) | DL4430C |
TOE3 | GeneProduct | AT5G67180 (TAIR) | DL4430C |
TSF | GeneProduct | AT4G20370 (TAIR) | Partially redundant paralog of FT |
TT16 | GeneProduct | AT5G23260 (TAIR) | |
U2AF35A | GeneProduct | AT1G27650 (TAIR) | Splicing factor |
Unknown | |||
VEL1 | GeneProduct | AT4G30200 (TAIR) | |
VEL2 | GeneProduct | AT2G18880 (TAIR) | |
VEL3 | GeneProduct | AT2G18870 (TAIR) | |
VIN3 | GeneProduct | AT5G57380 | |
VIN3 | GeneProduct | AT5G57380 (TAIR) | |
VIP3 | GeneProduct | AT4G29830 (TAIR) | |
VIP4 | GeneProduct | AT5G61150 (TAIR) | |
VRN1 | GeneProduct | AT3G18990 (TAIR) | |
VRN2 | GeneProduct | AT4G16845 (TAIR) | |
VRN5 | GeneProduct | AT3G24440 (TAIR) | |
WER | GeneProduct | AT5G14750 (TAIR) | Regulates/maintains FT mRNA stability in long days. Not co-localized with FT; controls flowering through photoperiod pathway. |
WNK1 | GeneProduct | AT3G04910 (TAIR) | |
WNK5 | GeneProduct | AT3G51630 (TAIR) | mutant is late flowering (see TAIR entry): Involved in flowering: non-traceable author statement: Pavel Lizal et al 2004 Related to flowering; no pathway found. |
WNK8 | GeneProduct | AT5G41990 | |
ZTL | GeneProduct | AT5G57360 (TAIR) | |
bZIP13 | GeneProduct | AT5G44080 (TAIR) | |
miRNA156 | Rna | ||
miRNA172 | Rna |
Annotated Interactions
No annotated interactions