Seed development (template) (Oryza sativa)

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7APS2ahelp us move these interactors into the pathwayGENE BASKETSimilar tocarbon partitioning during seed developmentBoxes distinguish different groups of proteins (some proteins are assigned to more than 1 group)Self interactionsMADS-boxHormone relatedComplexChloroplastic/Plastidic Biotic StressCategory (biotic, abiotic, etc) yet to be assignedBindingActivation; Up-regulationAbiotic StressYeast-2-Hybrid supported bait to prey bindingKEYUp-regulatesIron DeficiencySeed DevelopmentKnown to be important for seed development but no interactions found Smt1-1PPDKAMADS 2flavanone 3-hydroxylaseDREB1BDisease resistance-likeKOB1USP1TAP46FBO10Hydrolase Isocitrate lyasebhlh113MADS 5GDSL-like LipasePhosphoglucomutaseLea3CRINKLY4IDI2b-1,3-Glucanaseprx61ATP synthaseGW2Wsi18SIP2EF-1-d1REB PULPlasma membrane ATPaseSPKAOXDHE3-Ubi LigaseGluCGLUB4SSA2 RACK1ARing ZFAPS2aPyrrolidone-CarboxylpeptidaseUbiNAC2CCT/B-box zinc finger UDP-glucosyl transferaseENOD93-1CPL1HOX6IAA1BADH2GPT1OsAKACO1MADS 47FDHKinesinLOC_Os04g57020TRAB1VP2-likeBam 5RALF24UOS1PBZ1IAA9NAS1NAS2NB-ARC domain proteinSSIIIa/ Flo5SPS-HvIRT1Ser/thr PKHRGPMTNBam 9Flavin containing monooxygenase 3-likeGF14bWRKY 55Ser/thr PKAPRL3Complex 1LGhd7CIN7ABI5CDKA-1Wx1beta-fructofuranosidaseAPL1Amy2ALOC_Os06g39906 Myosin likeSPS-O sppVin1Amy1AAPL3MADS 16EF-1-g3MADS 18bip110LOC_Os10g40260 GPT2-3PSI-DPROLM 24ARD2SUS1Bam 1RPK-TMK1 precursorGAMYBEXPB2SAP11MADS 1PGI-aISA1LEA 14-AC3H1APL4/ AGPL4phosphomannomutasegrpA3SPS-ZmOryzain alpha ProteaseRAR1AP37MADS7/45psbC rbcLGBSSIImsrB-1UGP IDS1/ MT4ADelta-COPCycD2-2SSIVaPP2A-3DUF151SUS2APS1DUF630IDEF1PUP2OsCCP HMG1SCR-likeVIP1-likeStress-related proteinDEPOsFBX237ERG3Keto acyl CoA thiolaseLOC_Os08g04580LOC_Os03g55130 Pumilio Cyp2LOC_Os04g41910RBDMAS1INV3PP2A2DIP1PCNACRL1CIN2ferroportin1NAC5MCM2Photosystem I RC subunit ADP ribosylation GTPaseBam 10SUS3OSE2RCD1-LGF14APSRR-LAOPBP-LGB2PHD Zn-fingerU2 snRNPSSII-3Jasmonate-induced proteinTerpene cyclasesBam 4Bam 7TPR-PKCIN4PermeaseHSP40Serine proteaseLPLAIAA amidohydrolaseGluA-3LOC_Os01g14110TRNA endonucleaseGDSL-like LipaseDUF584SuSy4CML18ZOS1-15BTB/POZ CYP450 GF14FTHF1CTR1-likeGABA permeaseUGP2 BEIPPDKBAP-1gamma-1OsIAA13MADS-box ILGF14-eRab21BT1-1SUT2LOC_Os03g56940Bam 2IntegraseNAC 10SET domain proteinRetrotransposon RADPK4DEK1KRP3taxane 10-beta-hydroxylaseAHOXPHOL PP2A1GlyHSdr4Acyl carrierMal d 1-APDynaminSUT5GLN1-1Bam 6SuSy5PIP5KUbiquitin proteinaseSPS-SoHSP90PRP1PectinesteraseLOC_Os03g03860DPE2MADS 56VDAC5vATP synthase CEIL1SAM cmtrMAPK2FBK21GTP cyclohydrolaseSuSy6CIN1RAD6Male sterility proteinNAC075MLA10DU1eif(iso)4g EPSPS1Centromere proteinLOC_Os05g50190Gal1CSN5CIN3Myosin likeRPS20ZF-likeMPK5 EF-1-d2HSP70Anthranilate PhosphoribosyltransferaseImportin alpha-1aAPT1RUBQ1BT1-2UGP1 MT2bLOC_Os02g08530SUT3ZIP-1aSWEET3aRAV1-likeSSIVbbHLH60TUBB3TyrKSUT1EF-1-gRPBFBBTI4SSIVbSUT4Ring FingerPHOHSSIIIbAP2 domain EBP89PPDKBLOC_Os03g07360MADS 6PP2A-BGF14cLOC_Os04g53350Bam 8GluA-2bZIPGluB-1APhosphotyrosineAmy3B/Amy3COsPRP1Amy3DSBEIIbAnkyrin-like proteinVP1IRO2IDEF2Sci2S-REP LOC_Os03g43910Mitrochondrial carrierPto kinase Interactor 1RIC1CACTA, En/Spm DOF ZFMADS 14Phospholipase CBEIIIFBL60DAD1SNAC2HAD-likeVin 22-d-3-D phosphooctonate aldolaseAPL2Fructose-6-phosphate 1-phosphotransferaseIDI4MADS 15PHD zfbip129LOC_Os03g50390MADS 3Flavin-containing monooxygenaseSAL1 GluA-1CycA1-1DAHPS1Oryzain gamma ProteaseSCP40CYP450RCAA1CKX2/ Gn1aPr1bPROLM26Amy4APhragmoplast kinaseMADS 22FibrillinWRKY 51LOC_Os05g06330PITAREBLOC_Os12g37570RACLOC_Os09g38090CIN5PHT4;3HOX 22ATP synthetase aWRKY 71RSR1INV2Sub9PPROL 14 EAmy3ESGT1BTB-TAZPPR bZIPALDPCDKA-2GP-alpha-1PSII-OEP33Luc7-like 2JA cmtrNAC4SSIMADS 57Bam 3SSII-2ARF1Thioredoxin-likeEXPB4LTPL109Shaggy kinaseRISBZ1ALDH7SPP2GPT-ASBEIIaFERTILLINOsLKRNADPH G-3-P dhSPP1double-stranded beta-helix domainSSIIcTLR31GPT2-BSNAC1Amy3AMADS17IAA4LOC_Os01g12080YSL15ISA3OsEMPROLM28RIR 1bHDS1MADS 8NAAT1MADS 13Oligopeptide transporter 3ISA2PGI-bLOC_Os06g14190CycB1;1LOC_Os10g30450 LOC_Os01g62740YSL211756011235213, 6252525212185252526686111, 45, 625252125218, 57, 75125252525218, 571238, 48, 584952, 60, 75525252275224529, 4012237552626863529, 409, 4011, 526231, 9, 62, 8031, 375252235212527331, 376852525252, 755252653, 565239, 531252715252525279119, 408, 2052521111525252111254, 745212527, 54, 728, 20, 29, 46, 51...5252529, 4512127532, 5211525252679627, 521152521252529, 36, 6253525253521011, 3811127, 4212181218115252751153535252521252524952119, 401112528, 60111, 9, 455250525238, 485212521152525252125223113, 59521, 9, 4065352525261, 2, 40, 52, 598, 3043755212126, 23, 27125, 63526079306521, 2, 9, 18, 4552529, 401127521152525223525212532, 9, 36125251, 5252115233, 64, 6622, 26, 4752116811, 685252174, 3212, 6911527552155218, 5711525, 19, 21, 61, 638, 20, 5252115231, 3765521252525252, 7518, 57, 756525252681, 9, 62, 807, 32, 527, 14, 27521152759, 3652526, 23, 2723529, 4011525212111152529, 4552389, 8032, 52525252751311527652525252125212521, 2, 9, 18, 4516, 38, 48, 58, 61525265275525252652525232, 52521167, 79121152529, 8044121175525218, 57125213, 40, 52, 626, 23, 271212525218, 52, 57, 7552115225, 35, 525227, 701, 9, 34, 40525252, 5568111152521252125212521212181239, 5311, 68521252755210, 771, 2, 9, 4012525, 6312375212, 415235, 521, 9, 451152525279683818, 52, 57, 755252237, 10, 54, 71, 788, 20, 46525218, 5711, 6852115211521152521212106102852RAG-1CR457SSA11818, 57TATC52Inhibition; Down-regulationCo-expressionDPE113LOC_Os02g5389052Seed Development


Description

Rice reference network (Supplemental File S1_input.gpml)that is used as template for subsequent projections with Pathway GeneSWAPPER described in the manuscript.

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  1. Nakashima K, Tran LS, Van Nguyen D, Fujita M, Maruyama K, Todaka D, Ito Y, Hayashi N, Shinozaki K, Yamaguchi-Shinozaki K; ''Functional analysis of a NAC-type transcription factor OsNAC6 involved in abiotic and biotic stress-responsive gene expression in rice.''; Plant J, 2007 PubMed Europe PMC Scholia
  2. Li X, Duan X, Jiang H, Sun Y, Tang Y, Yuan Z, Guo J, Liang W, Chen L, Yin J, Ma H, Wang J, Zhang D; ''Genome-wide analysis of basic/helix-loop-helix transcription factor family in rice and Arabidopsis.''; Plant Physiol, 2006 PubMed Europe PMC Scholia
  3. Jeong JS, Kim YS, Baek KH, Jung H, Ha SH, Do Choi Y, Kim M, Reuzeau C, Kim JK; ''Root-specific expression of OsNAC10 improves drought tolerance and grain yield in rice under field drought conditions.''; Plant Physiol, 2010 PubMed Europe PMC Scholia
  4. Kawano Y, Akamatsu A, Hayashi K, Housen Y, Okuda J, Yao A, Nakashima A, Takahashi H, Yoshida H, Wong HL, Kawasaki T, Shimamoto K; ''Activation of a Rac GTPase by the NLR family disease resistance protein Pit plays a critical role in rice innate immunity.''; Cell Host Microbe, 2010 PubMed Europe PMC Scholia
  5. Asano T, Kunieda N, Omura Y, Ibe H, Kawasaki T, Takano M, Sato M, Furuhashi H, Mujin T, Takaiwa F, Wu Cy CY, Tada Y, Satozawa T, Sakamoto M, Shimada H; ''Rice SPK, a calmodulin-like domain protein kinase, is required for storage product accumulation during seed development: phosphorylation of sucrose synthase is a possible factor.''; Plant Cell, 2002 PubMed Europe PMC Scholia
  6. Hattori T, Terada T, Hamasuna ST; ''Sequence and functional analyses of the rice gene homologous to the maize Vp1.''; Plant Mol Biol, 1994 PubMed Europe PMC Scholia
  7. Yamamoto T, Mori Y, Ishibashi T, Uchiyama Y, Ueda T, Ando T, Hashimoto J, Kimura S, Sakaguchi K; ''Interaction between proliferating cell nuclear antigen (PCNA) and a DnaJ induced by DNA damage.''; J Plant Res, 2005 PubMed Europe PMC Scholia
  8. Sun SJ, Guo SQ, Yang X, Bao YM, Tang HJ, Sun H, Huang J, Zhang HS; ''Functional analysis of a novel Cys2/His2-type zinc finger protein involved in salt tolerance in rice.''; J Exp Bot, 2010 PubMed Europe PMC Scholia
  9. Cooper B, Clarke JD, Budworth P, Kreps J, Hutchison D, Park S, Guimil S, Dunn M, Luginbühl P, Ellero C, Goff SA, Glazebrook J; ''A network of rice genes associated with stress response and seed development.''; Proc Natl Acad Sci U S A, 2003 PubMed Europe PMC Scholia
  10. Kobayashi T, Ogo Y, Itai RN, Nakanishi H, Takahashi M, Mori S, Nishizawa NK; ''The transcription factor IDEF1 regulates the response to and tolerance of iron deficiency in plants.''; Proc Natl Acad Sci U S A, 2007 PubMed Europe PMC Scholia
  11. Takasaki H, Maruyama K, Kidokoro S, Ito Y, Fujita Y, Shinozaki K, Yamaguchi-Shinozaki K, Nakashima K; ''The abiotic stress-responsive NAC-type transcription factor OsNAC5 regulates stress-inducible genes and stress tolerance in rice.''; Mol Genet Genomics, 2010 PubMed Europe PMC Scholia
  12. Arora R, Agarwal P, Ray S, Singh AK, Singh VP, Tyagi AK, Kapoor S; ''MADS-box gene family in rice: genome-wide identification, organization and expression profiling during reproductive development and stress.''; BMC Genomics, 2007 PubMed Europe PMC Scholia
  13. Cao Y, Song F, Goodman RM, Zheng Z; ''Molecular characterization of four rice genes encoding ethylene-responsive transcriptional factors and their expressions in response to biotic and abiotic stress.''; J Plant Physiol, 2006 PubMed Europe PMC Scholia
  14. Zhang ZL, Xie Z, Zou X, Casaretto J, Ho TH, Shen QJ; ''A rice WRKY gene encodes a transcriptional repressor of the gibberellin signaling pathway in aleurone cells.''; Plant Physiol, 2004 PubMed Europe PMC Scholia
  15. Shobbar ZS, Oane R, Gamuyao R, De Palma J, Malboobi MA, Karimzadeh G, Javaran MJ, Bennett J; ''Abscisic acid regulates gene expression in cortical fiber cells and silica cells of rice shoots.''; New Phytol, 2008 PubMed Europe PMC Scholia
  16. Lee SK, Hwang SK, Han M, Eom JS, Kang HG, Han Y, Choi SB, Cho MH, Bhoo SH, An G, Hahn TR, Okita TW, Jeon JS; ''Identification of the ADP-glucose pyrophosphorylase isoforms essential for starch synthesis in the leaf and seed endosperm of rice (Oryza sativa L.).''; Plant Mol Biol, 2007 PubMed Europe PMC Scholia
  17. Ogo Y, Kobayashi T, Nakanishi Itai R, Nakanishi H, Kakei Y, Takahashi M, Toki S, Mori S, Nishizawa NK; ''A novel NAC transcription factor, IDEF2, that recognizes the iron deficiency-responsive element 2 regulates the genes involved in iron homeostasis in plants.''; J Biol Chem, 2008 PubMed Europe PMC Scholia
  18. Jain M, Khurana JP; ''Transcript profiling reveals diverse roles of auxin-responsive genes during reproductive development and abiotic stress in rice.''; FEBS J, 2009 PubMed Europe PMC Scholia
  19. Umemura K, Satou J, Iwata M, Uozumi N, Koga J, Kawano T, Koshiba T, Anzai H, Mitomi M; ''Contribution of salicylic acid glucosyltransferase, OsSGT1, to chemically induced disease resistance in rice plants.''; Plant J, 2009 PubMed Europe PMC Scholia
  20. Wang E, Xu X, Zhang L, Zhang H, Lin L, Wang Q, Li Q, Ge S, Lu BR, Wang W, He Z; ''Duplication and independent selection of cell-wall invertase genes GIF1 and OsCIN1 during rice evolution and domestication.''; BMC Evol Biol, 2010 PubMed Europe PMC Scholia
  21. Ohdan T, Francisco PB Jr, Sawada T, Hirose T, Terao T, Satoh H, Nakamura Y; ''Expression profiling of genes involved in starch synthesis in sink and source organs of rice.''; J Exp Bot, 2005 PubMed Europe PMC Scholia
  22. Kawasaki T, Okumura S, Kishimoto N, Shimada H, Higo K, Ichikawa N; ''RNA maturation of the rice SPK gene may involve trans-splicing.''; Plant J, 1999 PubMed Europe PMC Scholia
  23. Zeng D, Yan M, Wang Y, Liu X, Qian Q, Li J; ''Du1, encoding a novel Prp1 protein, regulates starch biosynthesis through affecting the splicing of Wxb pre-mRNAs in rice (Oryza sativa L.).''; Plant Mol Biol, 2007 PubMed Europe PMC Scholia
  24. Nakamura Y, Utsumi Y, Sawada T, Aihara S, Utsumi C, Yoshida M, Kitamura S; ''Characterization of the reactions of starch branching enzymes from rice endosperm.''; Plant Cell Physiol, 2010 PubMed Europe PMC Scholia
  25. Yan HB, Pan XX, Jiang HW, Wu GJ; ''Comparison of the starch synthesis genes between maize and rice: copies, chromosome location and expression divergence.''; Theor Appl Genet, 2009 PubMed Europe PMC Scholia
  26. Shin JH, Kim SR, An G; ''Rice aldehyde dehydrogenase7 is needed for seed maturation and viability.''; Plant Physiol, 2009 PubMed Europe PMC Scholia
  27. Radchuk VV, Borisjuk L, Sreenivasulu N, Merx K, Mock HP, Rolletschek H, Wobus U, Weschke W; ''Spatiotemporal profiling of starch biosynthesis and degradation in the developing barley grain.''; Plant Physiol, 2009 PubMed Europe PMC Scholia
  28. Kasai K, Kanno T, Akita M, Ikejiri-Kanno Y, Wakasa K, Tozawa Y; ''Identification of three shikimate kinase genes in rice: characterization of their differential expression during panicle development and of the enzymatic activities of the encoded proteins.''; Planta, 2005 PubMed Europe PMC Scholia
  29. Nantel A, Quatrano RS; ''Characterization of three rice basic/leucine zipper factors, including two inhibitors of EmBP-1 DNA binding activity.''; J Biol Chem, 1996 PubMed Europe PMC Scholia
  30. Takano-Kai N, Jiang H, Kubo T, Sweeney M, Matsumoto T, Kanamori H, Padhukasahasram B, Bustamante C, Yoshimura A, Doi K, McCouch S; ''Evolutionary history of GS3, a gene conferring grain length in rice.''; Genetics, 2009 PubMed Europe PMC Scholia
  31. Fu FF, Xue HW; ''Coexpression analysis identifies Rice Starch Regulator1, a rice AP2/EREBP family transcription factor, as a novel rice starch biosynthesis regulator.''; Plant Physiol, 2010 PubMed Europe PMC Scholia
  32. Chae HS, Cho YG, Park MY, Lee MC, Eun MY, Kang BG, Kim WT; ''Hormonal cross-talk between auxin and ethylene differentially regulates the expression of two members of the 1-aminocyclopropane-1-carboxylate oxidase gene family in rice (Oryza sativa L.).''; Plant Cell Physiol, 2000 PubMed Europe PMC Scholia
  33. Cho JH, Kim HB, Kim HS, Choi SB; ''Identification and characterization of a rice MCM2 homologue required for DNA replication.''; BMB Rep, 2008 PubMed Europe PMC Scholia
  34. Bi YM, Kant S, Clarke J, Gidda S, Ming F, Xu J, Rochon A, Shelp BJ, Hao L, Zhao R, Mullen RT, Zhu T, Rothstein SJ; ''Increased nitrogen-use efficiency in transgenic rice plants over-expressing a nitrogen-responsive early nodulin gene identified from rice expression profiling.''; Plant Cell Environ, 2009 PubMed Europe PMC Scholia
  35. Chen S, Yang Y, Shi W, Ji Q, He F, Zhang Z, Cheng Z, Liu X, Xu M; ''Badh2, encoding betaine aldehyde dehydrogenase, inhibits the biosynthesis of 2-acetyl-1-pyrroline, a major component in rice fragrance.''; Plant Cell, 2008 PubMed Europe PMC Scholia
  36. Ryoo N, Yu C, Park CS, Baik MY, Park IM, Cho MH, Bhoo SH, An G, Hahn TR, Jeon JS; ''Knockout of a starch synthase gene OsSSIIIa/Flo5 causes white-core floury endosperm in rice (Oryza sativa L.).''; Plant Cell Rep, 2007 PubMed Europe PMC Scholia
  37. Wang E, Wang J, Zhu X, Hao W, Wang L, Li Q, Zhang L, He W, Lu B, Lin H, Ma H, Zhang G, He Z; ''Control of rice grain-filling and yield by a gene with a potential signature of domestication.''; Nat Genet, 2008 PubMed Europe PMC Scholia
  38. Xue W, Xing Y, Weng X, Zhao Y, Tang W, Wang L, Zhou H, Yu S, Xu C, Li X, Zhang Q; ''Natural variation in Ghd7 is an important regulator of heading date and yield potential in rice.''; Nat Genet, 2008 PubMed Europe PMC Scholia
  39. Weng J, Gu S, Wan X, Gao H, Guo T, Su N, Lei C, Zhang X, Cheng Z, Guo X, Wang J, Jiang L, Zhai H, Wan J; ''Isolation and initial characterization of GW5, a major QTL associated with rice grain width and weight.''; Cell Res, 2008 PubMed Europe PMC Scholia
  40. Wang YQ, Wei XL, Xu HL, Chai CL, Meng K, Zhai HL, Sun AJ, Peng YG, Wu B, Xiao GF, Zhu Z; ''Cell-wall invertases from rice are differentially expressed in Caryopsis during the grain filling stage.''; J Integr Plant Biol, 2008 PubMed Europe PMC Scholia
  41. Mizutani M, Naganuma T, Tsutsumi K, Saitoh Y; ''The syncytium-specific expression of the Orysa;KRP3 CDK inhibitor: implication of its involvement in the cell cycle control in the rice (Oryza sativa L.) syncytial endosperm.''; J Exp Bot, 2010 PubMed Europe PMC Scholia
  42. Kawakatsu T, Yamamoto MP, Touno SM, Yasuda H, Takaiwa F; ''Compensation and interaction between RISBZ1 and RPBF during grain filling in rice.''; Plant J, 2009 PubMed Europe PMC Scholia
  43. Song Y, You J, Xiong L; ''Characterization of OsIAA1 gene, a member of rice Aux/IAA family involved in auxin and brassinosteroid hormone responses and plant morphogenesis.''; Plant Mol Biol, 2009 PubMed Europe PMC Scholia
  44. Yi N, Kim YS, Jeong MH, Oh SJ, Jeong JS, Park SH, Jung H, Choi YD, Kim JK; ''Functional analysis of six drought-inducible promoters in transgenic rice plants throughout all stages of plant growth.''; Planta, 2010 PubMed Europe PMC Scholia
  45. Utsumi Y, Nakamura Y; ''Structural and enzymatic characterization of the isoamylase1 homo-oligomer and the isoamylase1-isoamylase2 hetero-oligomer from rice endosperm.''; Planta, 2006 PubMed Europe PMC Scholia
  46. Ogo Y, Itai RN, Nakanishi H, Kobayashi T, Takahashi M, Mori S, Nishizawa NK; ''The rice bHLH protein OsIRO2 is an essential regulator of the genes involved in Fe uptake under Fe-deficient conditions.''; Plant J, 2007 PubMed Europe PMC Scholia
  47. Yamamoto MP, Onodera Y, Touno SM, Takaiwa F; ''Synergism between RPBF Dof and RISBZ1 bZIP activators in the regulation of rice seed expression genes.''; Plant Physiol, 2006 PubMed Europe PMC Scholia
  48. Sugimoto K, Takeuchi Y, Ebana K, Miyao A, Hirochika H, Hara N, Ishiyama K, Kobayashi M, Ban Y, Hattori T, Yano M; ''Molecular cloning of Sdr4, a regulator involved in seed dormancy and domestication of rice.''; Proc Natl Acad Sci U S A, 2010 PubMed Europe PMC Scholia
  49. Nakashima A, Chen L, Thao NP, Fujiwara M, Wong HL, Kuwano M, Umemura K, Shirasu K, Kawasaki T, Shimamoto K; ''RACK1 functions in rice innate immunity by interacting with the Rac1 immune complex.''; Plant Cell, 2008 PubMed Europe PMC Scholia
  50. Yu G, Olsen KM, Schaal BA; ''Molecular evolution of the endosperm starch synthesis pathway genes in rice (Oryza sativa L.) and its wild ancestor, O. rufipogon L.''; Mol Biol Evol, 2011 PubMed Europe PMC Scholia
  51. Kang SG, Jeong HK, Lee E, Natarajan S; ''Characterization of a lipoate-protein ligase A gene of rice (Oryza sativa L.).''; Gene, 2007 PubMed Europe PMC Scholia
  52. Hirose T, Terao T; ''A comprehensive expression analysis of the starch synthase gene family in rice (Oryza sativa L.).''; Planta, 2004 PubMed Europe PMC Scholia
  53. Thao NP, Chen L, Nakashima A, Hara S, Umemura K, Takahashi A, Shirasu K, Kawasaki T, Shimamoto K; ''RAR1 and HSP90 form a complex with Rac/Rop GTPase and function in innate-immune responses in rice.''; Plant Cell, 2007 PubMed Europe PMC Scholia
  54. Rzewuski G, Cornell KA, Rooney L, Bürstenbinder K, Wirtz M, Hell R, Sauter M; ''OsMTN encodes a 5'-methylthioadenosine nucleosidase that is up-regulated during submergence-induced ethylene synthesis in rice (Oryza sativa L.).''; J Exp Bot, 2007 PubMed Europe PMC Scholia
  55. Kobayashi T, Itai RN, Ogo Y, Kakei Y, Nakanishi H, Takahashi M, Nishizawa NK; ''The rice transcription factor IDEF1 is essential for the early response to iron deficiency, and induces vegetative expression of late embryogenesis abundant genes.''; Plant J, 2009 PubMed Europe PMC Scholia
  56. Kawakatsu T, Takaiwa F; ''Differences in transcriptional regulatory mechanisms functioning for free lysine content and seed storage protein accumulation in rice grain.''; Plant Cell Physiol, 2010 PubMed Europe PMC Scholia
  57. Mao C, Wang S, Jia Q, Wu P; ''OsEIL1, a rice homolog of the Arabidopsis EIN3 regulates the ethylene response as a positive component.''; Plant Mol Biol, 2006 PubMed Europe PMC Scholia
  58. Fabian T, Lorbiecke R, Umeda M, Sauter M; ''The cell cycle genes cycA1;1 and cdc2Os-3 are coordinately regulated by gibberellin in planta.''; Planta, 2000 PubMed Europe PMC Scholia
  59. Xiao B, Huang Y, Tang N, Xiong L; ''Over-expression of a LEA gene in rice improves drought resistance under the field conditions.''; Theor Appl Genet, 2007 PubMed Europe PMC Scholia
  60. Yamakawa H, Hirose T, Kuroda M, Yamaguchi T; ''Comprehensive expression profiling of rice grain filling-related genes under high temperature using DNA microarray.''; Plant Physiol, 2007 PubMed Europe PMC Scholia
  61. Oh SJ, Kim YS, Kwon CW, Park HK, Jeong JS, Kim JK; ''Overexpression of the transcription factor AP37 in rice improves grain yield under drought conditions.''; Plant Physiol, 2009 PubMed Europe PMC Scholia
  62. Hahn M, Walbot V; ''Effects of cold-treatment on protein synthesis and mRNA levels in rice leaves.''; Plant Physiol, 1989 PubMed Europe PMC Scholia
  63. Mao H, Sun S, Yao J, Wang C, Yu S, Xu C, Li X, Zhang Q; ''Linking differential domain functions of the GS3 protein to natural variation of grain size in rice.''; Proc Natl Acad Sci U S A, 2010 PubMed Europe PMC Scholia
  64. Zou M, Guan Y, Ren H, Zhang F, Chen F; ''Characterization of alternative splicing products of bZIP transcription factors OsABI5.''; Biochem Biophys Res Commun, 2007 PubMed Europe PMC Scholia
  65. Ashikari M, Sakakibara H, Lin S, Yamamoto T, Takashi T, Nishimura A, Angeles ER, Qian Q, Kitano H, Matsuoka M; ''Cytokinin oxidase regulates rice grain production.''; Science, 2005 PubMed Europe PMC Scholia
  66. Yi N, Oh SJ, Kim YS, Jang HJ, Park SH, Jeong JS, Song SI, Choi YD, Kim JK; ''Analysis of the Wsi18, a stress-inducible promoter that is active in the whole grain of transgenic rice.''; Transgenic Res, 2011 PubMed Europe PMC Scholia
  67. Zhu Y, Cai XL, Wang ZY, Hong MM; ''An interaction between a MYC protein and an EREBP protein is involved in transcriptional regulation of the rice Wx gene.''; J Biol Chem, 2003 PubMed Europe PMC Scholia
  68. Guo J, Wang F, Song J, Sun W, Zhang XS; ''The expression of Orysa;CycB1;1 is essential for endosperm formation and causes embryo enlargement in rice.''; Planta, 2010 PubMed Europe PMC Scholia
  69. Wang Y, Gao M, Li Q, Wang L, Wang J, Jeon JS, Qu N, Zhang Y, He Z; ''OsRAR1 and OsSGT1 physically interact and function in rice basal disease resistance.''; Mol Plant Microbe Interact, 2008 PubMed Europe PMC Scholia
  70. Schultz TF, Medina J, Hill A, Quatrano RS; ''14-3-3 proteins are part of an abscisic acid-VIVIPAROUS1 (VP1) response complex in the Em promoter and interact with VP1 and EmBP1.''; Plant Cell, 1998 PubMed Europe PMC Scholia
  71. Niu X, Tang W, Huang W, Ren G, Wang Q, Luo D, Xiao Y, Yang S, Wang F, Lu BR, Gao F, Lu T, Liu Y; ''RNAi-directed downregulation of OsBADH2 results in aroma (2-acetyl-1-pyrroline) production in rice (Oryza sativa L.).''; BMC Plant Biol, 2008 PubMed Europe PMC Scholia
  72. She KC, Kusano H, Koizumi K, Yamakawa H, Hakata M, Imamura T, Fukuda M, Naito N, Tsurumaki Y, Yaeshima M, Tsuge T, Matsumoto K, Kudoh M, Itoh E, Kikuchi S, Kishimoto N, Yazaki J, Ando T, Yano M, Aoyama T, Sasaki T, Satoh H, Shimada H; ''A novel factor FLOURY ENDOSPERM2 is involved in regulation of rice grain size and starch quality.''; Plant Cell, 2010 PubMed Europe PMC Scholia
  73. Komatsu S, Abbasi F, Kobori E, Fujisawa Y, Kato H, Iwasaki Y; ''Proteomic analysis of rice embryo: an approach for investigating Galpha protein-regulated proteins.''; Proteomics, 2005 PubMed Europe PMC Scholia
  74. Yamamoto T, Mori Y, Ishibashi T, Uchiyama Y, Sakaguchi N, Furukawa T, Hashimoto J, Kimura S, Sakaguchi K; ''Characterization of Rad6 from a higher plant, rice (Oryza sativa L.) and its interaction with Sgt1, a subunit of the SCF ubiquitin ligase complex.''; Biochem Biophys Res Commun, 2004 PubMed Europe PMC Scholia
  75. Shimada H, Koishihara H, Saito Y, Arashima Y, Furukawa T, Hayashi H; ''A rice antisense SPK transformant that lacks the accumulation of seed storage substances shows no correlation between sucrose concentration in phloem sap and demand for carbon sources in the sink organs.''; Plant Cell Physiol, 2004 PubMed Europe PMC Scholia
  76. Xie Z, Zhang ZL, Zou X, Yang G, Komatsu S, Shen QJ; ''Interactions of two abscisic-acid induced WRKY genes in repressing gibberellin signaling in aleurone cells.''; Plant J, 2006 PubMed Europe PMC Scholia
  77. Yamamoto T, Kimura S, Mori Y, Uchiyama Y, Ishibashi T, Hashimoto J, Sakaguchi K; ''Interaction between proliferating cell nuclear antigen and JUN-activation-domain-binding protein 1 in the meristem of rice, Oryza sativa L.''; Planta, 2003 PubMed Europe PMC Scholia
  78. Wong HL, Sakamoto T, Kawasaki T, Umemura K, Shimamoto K; ''Down-regulation of metallothionein, a reactive oxygen scavenger, by the small GTPase OsRac1 in rice.''; Plant Physiol, 2004 PubMed Europe PMC Scholia
  79. Cho JI, Lee SK, Ko S, Kim HK, Jun SH, Lee YH, Bhoo SH, Lee KW, An G, Hahn TR, Jeon JS; ''Molecular cloning and expression analysis of the cell-wall invertase gene family in rice (Oryza sativa L.).''; Plant Cell Rep, 2005 PubMed Europe PMC Scholia
  80. Ji H, Kim SR, Kim YH, Kim H, Eun MY, Jin ID, Cha YS, Yun DW, Ahn BO, Lee MC, Lee GS, Yoon UH, Lee JS, Lee YH, Suh SC, Jiang W, Yang JI, Jin P, McCouch SR, An G, Koh HJ; ''Inactivation of the CTD phosphatase-like gene OsCPL1 enhances the development of the abscission layer and seed shattering in rice.''; Plant J, 2010 PubMed Europe PMC Scholia

History

View all...
CompareRevisionActionTimeUserComment
118053view10:33, 24 May 2021EweitzModified title
78365view10:05, 7 January 2015MaintBotadded missing graphIds
73851view00:52, 26 February 2014MaintBotupdated schema
70196view02:21, 13 July 2013AlexanderPicoModified title
51039view18:50, 27 August 2012JaiswallabModified description
51038view18:48, 27 August 2012JaiswallabModified description
51037view18:47, 27 August 2012JaiswallabModified description
50604view05:24, 18 August 2012JaiswallabNew pathway

External references

DataNodes

View all...
NameTypeDatabase referenceComment
EF-1-d2GeneProductLOC_Os03g29260 (Rice Ensembl Gene) Elongation factor 1 beta 2
EPSPS1GeneProductLOC_Os06g04280 (Rice Ensembl Gene) 5-Enolpyruvylshikimate-3-phosphate synthase 1
LOC_Os03g43910GeneProductLOC_Os03g43910 (Rice Ensembl Gene)
2-d-3-D phosphooctonate aldolaseGeneProductLOC_Os12g10784 (Rice Ensembl Gene)
ABI5GeneProductLOC_Os01g64000 (Rice Ensembl Gene)
ACO1GeneProductLOC_Os09g27750 (Rice Ensembl Gene)
ADP ribosylation GTPaseGeneProductLOC_Os03g17020 (Rice Ensembl Gene)
AHOXGeneProductLOC_Os10g39030 (Rice Ensembl Gene) Associated with HOX family protein, expressed (UniProt Q8LN25)- Assigned as AHOX by Nemeth D and Hanumappa M (08/19/2010)
ALDH7GeneProductLOC_Os09g26880 (Rice Ensembl Gene) Needed for seed maturation and viability.

Expression Patterns during Seed Development Correspond with Pigment Accumulation Patterns in Seeds

Plays a role in the removal of MDA that forms during seed desiccation
ALDPGeneProductLOC_Os11g07020 (Rice Ensembl Gene) Aldolase
AOPBP-LGeneProductLOC_Os07g48570 (Rice Ensembl Gene)
AOXDHGeneProductLOC_Os03g31550 (Rice Ensembl Gene)
AP-1gamma-1GeneProductLOC_Os06g07090 (Rice Ensembl Gene)
AP2 domain GeneProductLOC_Os03g64260 (Rice Ensembl Gene)
AP37GeneProductLOC_Os01g58420 (Rice Ensembl Gene)
APL1GeneProductLOC_Os05g50380 (Rice Ensembl Gene) ADP-glucose Pyrophosphorylase large subunit 1
APL2GeneProductLOC_Os01g44220 (Rice Ensembl Gene) ADP-glucose Pyrophosphorylase large subunit 2, binding only happens with APS2b

SSP genes examined was significantly suppressed in KD-RISBZ1/KD-RPBF

expression diminished during grain filling at high temperatures
APL3GeneProductLOC_Os03g52460 (Rice Ensembl Gene)
APL4/ AGPL4GeneProductLOC_Os07g13980 (Rice Ensembl Gene)
APRL3GeneProductLOC_Os02g51850 (Rice Ensembl Gene) Disulfide Isomerase
APS1GeneProductLOC_Os09g12660 (Rice Ensembl Gene) ADP-glucose Pyrophosphorylase small subunit 1  expression diminished during grain filling at high temperatures
APS2aGeneProductLOC_Os08g25734 (Rice Ensembl Gene) Also called AGPS2, ADP-glucose Pyrophosphorylase small subunit 2;

SSP genes examined was significantly suppressed in KD-RISBZ1/KD-RPBF has two different transcripts= a:in leaf, b:in endosperm; binding with APL2 and Down regulation by RISBZ1 only happens with APS2b, binding with APL1 only happens with APS2a

expression diminished during grain filling at high temperatures
APT1GeneProductLOC_Os12g39860 (Rice Ensembl Gene) Adenine phosphoribosyltransferase 1
ARD2GeneProductLOC_Os03g06620 (Rice Ensembl Gene) 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 2; Also called IDI1 and SIP2A
AREBGeneProductLOC_Os05g41070 (Rice Ensembl Gene)
ARF1GeneProductLOC_Os11g32110 (Rice Ensembl Gene)
ATP synthaseGeneProductLOC_Os03g17070 (Rice Ensembl Gene)
ATP synthetase aGeneProductLOC_Os02g54624 (Rice Ensembl Gene)
Acyl carrierGeneProductLOC_Os07g12150 (Rice Ensembl Gene)
Amy1AGeneProductLOC_Os02g52710 (Rice Ensembl Gene)
Amy2AGeneProductLOC_Os06g49970 (Rice Ensembl Gene) ABA-repressible and GA-inducible
Amy3AGeneProductLOC_Os09g28400 (Rice Ensembl Gene)
Amy3B/Amy3CGeneProductLOC_Os09g28420 (Rice Ensembl Gene)
Amy3DGeneProductLOC_Os08g36910 (Rice Ensembl Gene)
Amy3EGeneProductLOC_Os08g36900 (Rice Ensembl Gene)
Amy4AGeneProductLOC_Os01g51754 (Rice Ensembl Gene)
Ankyrin-like proteinGeneProductLOC_Os09g17329 (Rice Ensembl Gene) Iron transporter
Anthranilate PhosphoribosyltransferaseGeneProductLOC_Os03g03450 (Rice Ensembl Gene)
BADH2GeneProductLOC_Os08g32870 (Rice Ensembl Gene) SCENTED KERNEL 2 (fragrance) betaine-aldehyde dehydrogenase 2
BBTI4GeneProductLOC_Os01g03340 (Rice Ensembl Gene) Bowman-Birk type bran trypsin inhibitor
BEIIIGeneProductLOC_Os06g26234 (Rice Ensembl Gene)
BEIGeneProductLOC_Os06g51084 (Rice Ensembl Gene) expression diminished during grain filling at high temperatures
BT1-1GeneProductLOC_Os05g07900 (Rice Ensembl Gene)
BT1-2GeneProductLOC_Os02g10800 (Rice Ensembl Gene)
BTB-TAZGeneProductLOC_Os01g66890 (Rice Ensembl Gene)
BTB/POZ GeneProductLOC_Os10g29390 (Rice Ensembl Gene) 2-keto-3-deoxy-6-phosphogluconate aldolase
Bam 10GeneProductLOC_Os03g22790 (Rice Ensembl Gene)
Bam 1GeneProductLOC_Os10g41550 (Rice Ensembl Gene)
Bam 2GeneProductLOC_Os07g35940 (Rice Ensembl Gene)
Bam 3GeneProductLOC_Os07g35880 (Rice Ensembl Gene)
Bam 4GeneProductLOC_Os07g47120 (Rice Ensembl Gene)
Bam 5GeneProductLOC_Os10g32810 (Rice Ensembl Gene)
Bam 6GeneProductLOC_Os09g39570 (Rice Ensembl Gene)
Bam 7GeneProductLOC_Os03g04770 (Rice Ensembl Gene)
Bam 8GeneProductLOC_Os01g13550 (Rice Ensembl Gene)
Bam 9GeneProductLOC_Os02g03690 (Rice Ensembl Gene)
C3H1GeneProductLOC_Os01g07930 (Rice Ensembl Gene) Zinc finger CCCH domain-containing protein Glutaredoxin-related
CACTA, En/Spm GeneProductLOC_Os01g09220 (Rice Ensembl Gene)
CCT/B-box zinc finger GeneProductLOC_Os02g49230 (Rice Ensembl Gene)
CDKA-1GeneProductLOC_Os03g02680 (Rice Ensembl Gene)
CDKA-2GeneProductLOC_Os02g03060 (Rice Ensembl Gene)
CIN1GeneProductLOC_Os02g33110 (Rice Ensembl Gene)
CIN2GeneProductLOC_Os04g33740 (Rice Ensembl Gene)
CIN3GeneProductLOC_Os04g33720 (Rice Ensembl Gene)
CIN4GeneProductLOC_Os01g73580 (Rice Ensembl Gene)
CIN5GeneProductLOC_Os04g56930 (Rice Ensembl Gene)
CIN7GeneProductLOC_Os09g08072 (Rice Ensembl Gene)
CKX2/ Gn1aGeneProductLOC_Os01g10110 (Rice Ensembl Gene) Cytokinin oxidase/dehydrogenase 2
CML18GeneProductLOC_Os05g13580 (Rice Ensembl Gene)
CPL1GeneProductLOC_Os07g10690 (Rice Ensembl Gene) Seed Shattering
CR4GeneProductLOC_Os03g43670 (Rice Ensembl Gene) homology with Crinkly4
CRINKLY4GeneProductLOC_Os08g28710 (Rice Ensembl Gene)
CRL1GeneProductLOC_Os03g05510 (Rice Ensembl Gene)
CSN5GeneProductLOC_Os04g56070 (Rice Ensembl Gene)
CTR1-likeGeneProductLOC_Os09g39320 (Rice Ensembl Gene) Multitransmembrane protein
CYP450 GeneProductLOC_Os10g08474 (Rice Ensembl Gene) AP2 transcription factor
CYP450GeneProductLOC_Os09g10340 (Rice Ensembl Gene)
Centromere proteinGeneProductLOC_Os03g20580 (Rice Ensembl Gene)
Complex 1LGeneProductLOC_Os06g50000 (Rice Ensembl Gene) Assigned as Complex 1L by Nemeth D and Hanumappa M (10/21/2010) complex 1 family protein-like (LYR family)
CycA1-1GeneProductLOC_Os01g13260 (Rice Ensembl Gene)
CycB1;1GeneProductLOC_Os01g59120 (Rice Ensembl Gene) Seed Shattering
CycD2-2GeneProductLOC_Os07g42860 (Rice Ensembl Gene)
Cyp2GeneProductLOC_Os02g02890 (Rice Ensembl Gene)
DAD1GeneProductLOC_Os04g32550 (Rice Ensembl Gene) Defender against cell death 1
DAHPS1GeneProductLOC_Os03g27230 (Rice Ensembl Gene) 3-deoxy-D-arabino heptulosonate-7-phosphate synthase 1
DEK1GeneProductLOC_Os02g48000 (Rice Ensembl Gene)
DEPGeneProductLOC_Os11g29370 (Rice Ensembl Gene) Haloacid dehalogenase-like hydrolase family protein
DIP1GeneProductLOC_Os05g34070 (Rice Ensembl Gene)
DMAS1GeneProductLOC_Os03g13390 (Rice Ensembl Gene) Deoxymugineic acid synthase1
DOF ZFGeneProductLOC_Os02g49440 (Rice Ensembl Gene)
DPE1GeneProductLOC_Os07g43390 (Rice Ensembl Gene)
DPE2GeneProductLOC_Os07g46790 (Rice Ensembl Gene) Also called ALK
DPK4GeneProductLOC_Os06g45300 (Rice Ensembl Gene) Ser/thr/tyr kinase
DREB1BGeneProductLOC_Os09g35010 (Rice Ensembl Gene)
DU1GeneProductLOC_Os10g35550 (Rice Ensembl Gene) dull endosperm-1
DUF151GeneProductLOC_Os01g50622 (Rice Ensembl Gene)
DUF584GeneProductLOC_Os05g45450 (Rice Ensembl Gene)
DUF630GeneProductLOC_Os10g41310 (Rice Ensembl Gene) Symbol assigned by Nemeth D and Hanumappa M (08/19/2010)
Delta-COPGeneProductLOC_Os01g61710 (Rice Ensembl Gene) Delta coatamer
Disease resistance-likeGeneProductLOC_Os12g40490 (Rice Ensembl Gene) LIM domain-containing protein, putative, expressed
DynaminGeneProductLOC_Os06g13820 (Rice Ensembl Gene)
E3-Ubi LigaseGeneProductLOC_Os05g47780 (Rice Ensembl Gene)
EBP89GeneProductLOC_Os03g08460 (Rice Ensembl Gene) Also called EREBP1
EF-1-d1GeneProductLOC_Os07g42300 (Rice Ensembl Gene) EF-1B beta 1, EF-1-beta
EF-1-g3GeneProductLOC_Os06g37440 (Rice Ensembl Gene) eEF-1B gamma 3
EF-1-gGeneProductLOC_Os02g12800 (Rice Ensembl Gene) eEF-1G
EIL1GeneProductLOC_Os03g20780 (Rice Ensembl Gene)
ENOD93-1GeneProductLOC_Os06g05010 (Rice Ensembl Gene)
ERG3GeneProductLOC_Os04g44870 (Rice Ensembl Gene) RPP16
EXPB2GeneProductLOC_Os10g40710 (Rice Ensembl Gene)
EXPB4GeneProductLOC_Os10g40730 (Rice Ensembl Gene) Beta-expansin-4
FBK21GeneProductLOC_Os10g21930 (Rice Ensembl Gene) F-box domain and kelch repeat containing protein
FBL60GeneProductLOC_Os12g33230 (Rice Ensembl Gene) Leucine rich repeat
FBO10GeneProductLOC_Os11g34460 (Rice Ensembl Gene) Adagio-like protein 3 Cytochrome P450
FDHGeneProductLOC_Os02g57040 (Rice Ensembl Gene) Alcohol dehydrogenase class 3; Also called FALDH, GSH-FDH (Glutathione-dependent formaldehyde dehydrogenase)
FERTILLINGeneProductLOC_Os06g01650 (Rice Ensembl Gene)
FibrillinGeneProductLOC_Os09g04790 (Rice Ensembl Gene)
Flavin containing monooxygenase 3-likeGeneProductLOC_Os09g37620 (Rice Ensembl Gene) Serine/threonine protein kinase
Flavin-containing monooxygenaseGeneProductLOC_Os01g15540 (Rice Ensembl Gene)
Fructose-6-phosphate 1-phosphotransferaseGeneProductLOC_Os08g25720 (Rice Ensembl Gene)
GABA permeaseGeneProductLOC_Os01g71720 (Rice Ensembl Gene) Amino acid/polyamine transporter
GAMYBGeneProductLOC_Os01g59660 (Rice Ensembl Gene) regulates GA induction of Amy2A
GB2GeneProductLOC_Os03g57960 (Rice Ensembl Gene) Globulin 2
GBSSIIGeneProductLOC_Os07g22930 (Rice Ensembl Gene) Also called ALK
GDSL-like LipaseGeneProductLOC_Os01g11650 (Rice Ensembl Gene)
GDSL-like LipaseGeneProductLOC_Os10g05088 (Rice Ensembl Gene) SGNH_plant_lipase
GF14-eGeneProductLOC_Os02g36974 (Rice Ensembl Gene)
GF14AGeneProductLOC_Os08g37490 (Rice Ensembl Gene) WIN2, WIP2
GF14FGeneProductLOC_Os03g50290 (Rice Ensembl Gene) G-box factor 14-3-3 f
GF14bGeneProductLOC_Os04g38870 (Rice Ensembl Gene)
GF14cGeneProductLOC_Os08g33370 (Rice Ensembl Gene)
GLN1-1GeneProductLOC_Os02g50240 (Rice Ensembl Gene) Glutamine synthetase cytosolic isozyme 1-1, also called RGS28 and GS1;1
GLUB4GeneProductLOC_Os02g16830 (Rice Ensembl Gene)
GP-alpha-1GeneProductLOC_Os05g26890 (Rice Ensembl Gene) G-alpha protein also called GPA1/D1/GA1
GPT-AGeneProductLOC_Os05g07670 (Rice Ensembl Gene) Assigned as GPT-A by Nemeth D and Hanumappa M (10/21/2010)
GPT1GeneProductLOC_Os08g08840 (Rice Ensembl Gene)
GPT2-3GeneProductLOC_Os07g33910 (Rice Ensembl Gene)
GPT2-BGeneProductLOC_Os01g07310 (Rice Ensembl Gene) Assigned as GPT-B by Nemeth D and Hanumappa M (10/21/2010)
GTP cyclohydrolaseGeneProductLOC_Os05g38570 (Rice Ensembl Gene) GTP cyclohydrolase II/3,4-dihydroxy-2-butanone-4-phosphate synthase
GW2GeneProductLOC_Os02g14720 (Rice Ensembl Gene) encodes a RING protein with E3 ubiquitin ligase activity
Gal1GeneProductLOC_Os10g35110 (Rice Ensembl Gene)
Ghd7 GeneProductLOC_Os07g15770 (Rice Ensembl Gene) yield potential
GluA-1GeneProductLOC_Os01g55690 (Rice Ensembl Gene)
GluA-2GeneProductLOC_Os10g26060 (Rice Ensembl Gene)
GluA-3GeneProductLOC_Os03g31360 (Rice Ensembl Gene)
GluB-1AGeneProductLOC_Os02g15169 (Rice Ensembl Gene) UniProt ID: P14323
GluCGeneProductLOC_Os02g15090 (Rice Ensembl Gene)
GlyHGeneProductLOC_Os11g27400 (Rice Ensembl Gene) Chitinase
HAD-likeGeneProductLOC_Os03g16670 (Rice Ensembl Gene)
HDS1GeneProductLOC_Os02g39160 (Rice Ensembl Gene) 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 1
HMG1GeneProductLOC_Os06g51220 (Rice Ensembl Gene)
HOX 22GeneProductLOC_Os04g45810 (Rice Ensembl Gene) In Cooper et al. 2003 protein sequence provided matches HOX 22, however it was named HOX6 (AF145730)
HOX6GeneProductLOC_Os09g35910 (Rice Ensembl Gene) Cooper et al. 2003 called this leucine zipper and misnamed HOX 22 as HOX 6 (22834)
HRGPGeneProductLOC_Os03g13560 (Rice Ensembl Gene) Hydroxyproline-rich glycoprotein family protein-UniPret ID
HSP40GeneProductLOC_Os03g44620 (Rice Ensembl Gene)
HSP70GeneProductLOC_Os12g14070 (Rice Ensembl Gene)
HSP90GeneProductLOC_Os09g30418 (Rice Ensembl Gene) Also called HSP81-2
Hydrolase GeneProductLOC_Os02g19650 (Rice Ensembl Gene) Iron/ascorbate oxidoreductases
IAA amidohydrolaseGeneProductLOC_Os03g62060 (Rice Ensembl Gene)
IAA1GeneProductLOC_Os01g08320 (Rice Ensembl Gene)
IAA4GeneProductLOC_Os01g18360 (Rice Ensembl Gene)
IAA9GeneProductLOC_Os02g56120 (Rice Ensembl Gene)
IDEF1GeneProductLOC_Os08g01090 (Rice Ensembl Gene) IDE-binding factor 2
IDEF2GeneProductLOC_Os05g35170 (Rice Ensembl Gene) IDE-binding factor 2
IDI2GeneProductLOC_Os11g11050 (Rice Ensembl Gene) Initiation factor 2 subunit family protein
IDI4GeneProductLOC_Os09g28050 (Rice Ensembl Gene) asparate aminotransferase
IDS1/ MT4AGeneProductLOC_Os12g38270 (Rice Ensembl Gene)
INV2GeneProductLOC_Os01g22900 (Rice Ensembl Gene) Neutral/alkaline invertase 2 Assigned as NA-INV1 by Nemeth D and Hanumappa M (10/21/2010)
INV3GeneProductLOC_Os02g32730 (Rice Ensembl Gene) Neutral/alkaline invertase 3 Assigned as NA-INV1 by Nemeth D and Hanumappa M (10/21/2010)
IRO2GeneProductLOC_Os01g72370 (Rice Ensembl Gene) basic/helix-loop-helix 56
IRT1GeneProductLOC_Os03g46470 (Rice Ensembl Gene)
ISA1GeneProductLOC_Os08g40930 (Rice Ensembl Gene) expression diminished during grain filling at high temperatures
ISA2GeneProductLOC_Os05g32710 (Rice Ensembl Gene)
ISA3GeneProductLOC_Os09g29404 (Rice Ensembl Gene)
Importin alpha-1aGeneProductLOC_Os01g14950 (Rice Ensembl Gene) NLS RECEPTOR
IntegraseGeneProductLOC_Os11g11694 (Rice Ensembl Gene)
Isocitrate lyaseGeneProductLOC_Os07g34520 (Rice Ensembl Gene)
JA cmtrGeneProductLOC_Os06g22440 (Rice Ensembl Gene) Putative S-adenosyl-L-methionine Subtilisin N-terminal Region
Jasmonate-induced proteinGeneProductLOC_Os12g09700 (Rice Ensembl Gene) Histone H3 (Lys9) methyltransferase
KOB1GeneProductLOC_Os02g57240 (Rice Ensembl Gene) Probable voltage-gated potassium channel subunit beta
KRP3GeneProductLOC_Os11g40030 (Rice Ensembl Gene)
Keto acyl CoA thiolaseGeneProductLOC_Os02g57260 (Rice Ensembl Gene)
KinesinGeneProductLOC_Os03g43100 (Rice Ensembl Gene)
LEA 14-AGeneProductLOC_Os05g50710 (Rice Ensembl Gene)
LOC_Os01g12080GeneProductLOC_Os01g12080 (Rice Ensembl Gene)
LOC_Os01g14110GeneProductLOC_Os01g14110 (Rice Ensembl Gene) Assigned as bHLH-tf by Nemeth D and Hanumappa M (10/21/2010)
LOC_Os01g62740GeneProductLOC_Os01g62740 (Rice Ensembl Gene)
LOC_Os02g08530GeneProductLOC_Os02g08530 (Rice Ensembl Gene) Protein Kinase-UniProt ID
LOC_Os02g53890GeneProductLOC_Os02g53890 (Rice Ensembl Gene)
LOC_Os03g03860GeneProductLOC_Os03g03860 (Rice Ensembl Gene) Unknown-UniProt ID
LOC_Os03g07360GeneProductLOC_Os03g07360 (Rice Ensembl Gene)
LOC_Os03g50390GeneProductLOC_Os03g50390 (Rice Ensembl Gene) Protein Kinase-UniProt ID
LOC_Os03g55130 GeneProductLOC_Os03g55130 (Rice Ensembl Gene)
LOC_Os03g56940GeneProductLOC_Os03g56940 (Rice Ensembl Gene)
LOC_Os04g41910GeneProductLOC_Os04g41910 (Rice Ensembl Gene)
LOC_Os04g53350GeneProductLOC_Os04g53350 (Rice Ensembl Gene) Cooper 31122 ID
LOC_Os04g57020GeneProductLOC_Os04g57020 (Rice Ensembl Gene)
LOC_Os05g06330GeneProductLOC_Os05g06330 (Rice Ensembl Gene)
LOC_Os05g50190GeneProductLOC_Os05g50190 (Rice Ensembl Gene) Protein Kinase-UniProt ID
LOC_Os06g14190GeneProductLOC_Os06g14190 (Rice Ensembl Gene)
LOC_Os06g39906 GeneProductLOC_Os06g39906 (Rice Ensembl Gene)
LOC_Os08g04580GeneProductLOC_Os08g04580 (Rice Ensembl Gene) Thioredoxin
LOC_Os09g38090GeneProductLOC_Os09g38090 (Rice Ensembl Gene)
LOC_Os10g30450 GeneProductLOC_Os10g30450 (Rice Ensembl Gene) Unknown-UniProt ID
LOC_Os10g40260 GeneProductLOC_Os10g40260 (Rice Ensembl Gene)
LOC_Os12g37570GeneProductLOC_Os12g37570 (Rice Ensembl Gene) Protein Kinase-UniProt ID
LPLAGeneProductLOC_Os08g33810 (Rice Ensembl Gene)
LTPL109GeneProductLOC_Os07g37385 (Rice Ensembl Gene) Extensin_2
Lea3GeneProductLOC_Os05g46480 (Rice Ensembl Gene) Interaction with TRAB1 and VP1 by orthology to H vulgare ABA related
Luc7-like 2GeneProductLOC_Os03g62640 (Rice Ensembl Gene) Sarcoplasmic reticulum
MADS 13GeneProductLOC_Os12g10540 (Rice Ensembl Gene) Also called MAF1
MADS 14GeneProductLOC_Os03g54160 (Rice Ensembl Gene) Also called AGL10, RAP1B
MADS 15GeneProductLOC_Os07g01820 (Rice Ensembl Gene) Also called RAP1A
MADS 16GeneProductLOC_Os06g49840 (Rice Ensembl Gene)
MADS 18GeneProductLOC_Os07g41370 (Rice Ensembl Gene) Also called MADS 28
MADS 1GeneProductLOC_Os03g11614 (Rice Ensembl Gene) Also called LHS1
MADS 22GeneProductLOC_Os02g52340 (Rice Ensembl Gene) Also called RMD1
MADS 2GeneProductLOC_Os01g66030 (Rice Ensembl Gene)
MADS 3GeneProductLOC_Os01g10504 (Rice Ensembl Gene) Also called RAG
MADS 47GeneProductLOC_Os03g08754 (Rice Ensembl Gene) Also called MDP
MADS 56GeneProductLOC_Os10g39130 (Rice Ensembl Gene)
MADS 57GeneProductLOC_Os02g49840 (Rice Ensembl Gene)
MADS 5GeneProductLOC_Os06g06750 (Rice Ensembl Gene)
MADS 6GeneProductLOC_Os02g45770 (Rice Ensembl Gene) Also called MFO1
MADS 8GeneProductLOC_Os09g32948 (Rice Ensembl Gene) Also called MADS 24
MADS-box ILGeneProductLOC_Os02g54080 (Rice Ensembl Gene)
MADS17GeneProductLOC_Os04g49150 (Rice Ensembl Gene) Also called NMADS3 and RMADS213
MADS7/45GeneProductLOC_Os08g41950 (Rice Ensembl Gene) also called MADS 45, AGL6, M79
MAPK2GeneProductLOC_Os02g05480 (Rice Ensembl Gene) UniProt:MAPK2, BIMK1, MAP3, MAPK5, MPK3, MSRMK2
MCM2GeneProductLOC_Os11g29380 (Rice Ensembl Gene)
MLA10GeneProductLOC_Os11g16470 (Rice Ensembl Gene) Ankyrin repeat
MPK5GeneProductLOC_Os03g17700 (Rice Ensembl Gene) UniProt:MPK3, BIMK1, MAP3, MAPK2, MPK5
MT2bGeneProductLOC_Os05g02070 (Rice Ensembl Gene)
MTNGeneProductLOC_Os06g02220 (Rice Ensembl Gene) Methylthioadenosine/S-adenosyl homocysteine nucleosidase
Mal d 1-APGeneProductLOC_Os01g56470 (Rice Ensembl Gene)
Male sterility proteinGeneProductLOC_Os05g43040 (Rice Ensembl Gene)
Mitrochondrial carrierGeneProductLOC_Os03g11510 (Rice Ensembl Gene)
Myosin likeGeneProductLOC_Os03g16120 (Rice Ensembl Gene)
Myosin likeGeneProductLOC_Os05g02820 (Rice Ensembl Gene)
NAAT1GeneProductLOC_Os02g20360 (Rice Ensembl Gene) nicotianamine aminotransferase
NAC 10GeneProductLOC_Os11g03300 (Rice Ensembl Gene)
NAC075GeneProductLOC_Os01g09550 (Rice Ensembl Gene)
NAC2GeneProductLOC_Os02g57650 (Rice Ensembl Gene)
NAC4GeneProductLOC_Os01g60020 (Rice Ensembl Gene)
NAC5GeneProductLOC_Os11g08210 (Rice Ensembl Gene) ABA related
NADPH G-3-P dhGeneProductLOC_Os08g34210 (Rice Ensembl Gene)
NAS1GeneProductLOC_Os03g19427 (Rice Ensembl Gene) NA synthase gene 1
NAS2GeneProductLOC_Os03g19420 (Rice Ensembl Gene) NA synthase gene 2
NB-ARC domain proteinGeneProductLOC_Os11g34880 (Rice Ensembl Gene) Jacalin
OSE2GeneProductLOC_Os01g64730 (Rice Ensembl Gene) bZIP transcription factor domain containing protein
Oligopeptide transporter 3GeneProductLOC_Os03g54000 (Rice Ensembl Gene) Isp4-like
Oryzain alpha ProteaseGeneProductLOC_Os04g55650 (Rice Ensembl Gene)
Oryzain gamma ProteaseGeneProductLOC_Os09g27030 (Rice Ensembl Gene)
OsAKGeneProductLOC_Os02g41590 (Rice Ensembl Gene) Adenosine kinase
OsCCP GeneProductLOC_Os12g08760 (Rice Ensembl Gene) Assigned as OsCCP by Nemeth D and Hanumappa M (10/21/2010) carboxyvinyl-carboxyphosphonate phosphorylmutase
OsEMGeneProductLOC_Os05g28210 (Rice Ensembl Gene)
OsFBX237GeneProductLOC_Os07g35050 (Rice Ensembl Gene) Cdc2-related protein kinase
OsIAA13GeneProductLOC_Os03g53150 (Rice Ensembl Gene)
OsLKRGeneProductLOC_Os02g54254 (Rice Ensembl Gene)
OsPRP1GeneProductLOC_Os10g05970 (Rice Ensembl Gene) Proline rich protein
PBZ1GeneProductLOC_Os12g36880 (Rice Ensembl Gene)
PCNAGeneProductLOC_Os02g56130 (Rice Ensembl Gene) Proliferating cell nuclear antigen expressed strongly in the shoot apical meristem
PGI-aGeneProductLOC_Os09g29070 (Rice Ensembl Gene)
PGI-bGeneProductLOC_Os06g14510 (Rice Ensembl Gene)
PHD Zn-fingerGeneProductLOC_Os11g12650 (Rice Ensembl Gene)
PHD zfGeneProductLOC_Os03g04980 (Rice Ensembl Gene)
PHOHGeneProductLOC_Os01g63270 (Rice Ensembl Gene) Also called ALK
PHOL GeneProductLOC_Os03g55090 (Rice Ensembl Gene)
PHT4;3GeneProductLOC_Os01g63290 (Rice Ensembl Gene) Na+ dep inorg phosphate cotransporter
PIP5KGeneProductLOC_Os02g57660 (Rice Ensembl Gene) Putative phosphatidylinositol-4-phosphate 5-kinase
PITGeneProductLOC_Os01g05620 (Rice Ensembl Gene)
PP2A-3GeneProductLOC_Os02g12580 (Rice Ensembl Gene)
PP2A-BGeneProductLOC_Os05g40350 (Rice Ensembl Gene)
PP2A1GeneProductLOC_Os06g37660 (Rice Ensembl Gene)
PP2A2GeneProductLOC_Os03g59060 (Rice Ensembl Gene)
PPDKAGeneProductLOC_Os03g31750 (Rice Ensembl Gene) Assigned as GPT-B by Nemeth D and Hanumappa M (10/21/2010)
PPDKBGeneProductLOC_Os05g33570 (Rice Ensembl Gene) Involved in grain filling
PPR bZIPGeneProductLOC_Os05g40320 (Rice Ensembl Gene) Symbol assigned by Nemeth D and Hanumappa M (08/19/2010)
PPROL 14 EGeneProductLOC_Os05g26377 (Rice Ensembl Gene) 13 kDa Prolamin, also called PPROL 14, PPROL 4A, PPROL 7, PG5a, PROLM 8, PROLM 9, UniProt ID: Q95737
PROLM 24GeneProductLOC_Os06g31070 (Rice Ensembl Gene) 16 kDa Prolamin
PROLM26GeneProductLOC_Os07g10580 (Rice Ensembl Gene) Prolamin precursor, also called RP5
PROLM28GeneProductLOC_Os12g16890 (Rice Ensembl Gene) Prolamin precursor, protein also called PPROL 17
PRP1GeneProductLOC_Os05g13940 (Rice Ensembl Gene)
PSI-DGeneProductLOC_Os08g44680 (Rice Ensembl Gene)
PSII-OEP33GeneProductLOC_Os01g31690 (Rice Ensembl Gene) No symbol in gramene so OEP33 was assigned. 33kDa oxygen evolving protein of photosystem II
PSRR-LGeneProductLOC_Os07g25710 (Rice Ensembl Gene) Phosphate starvation response regulator
PULGeneProductLOC_Os04g08270 (Rice Ensembl Gene) expression diminished during grain filling at high temperatures
PUP2GeneProductLOC_Os06g46740 (Rice Ensembl Gene)
PectinesteraseGeneProductLOC_Os07g02810 (Rice Ensembl Gene)
PermeaseGeneProductLOC_Os07g04180 (Rice Ensembl Gene)
PhosphoglucomutaseGeneProductLOC_Os05g48200 (Rice Ensembl Gene)
Phospholipase CGeneProductLOC_Os07g49330 (Rice Ensembl Gene)
PhosphotyrosineGeneProductLOC_Os08g44320 (Rice Ensembl Gene)
Photosystem I RC subunit GeneProductLOC_Os07g05480 (Rice Ensembl Gene)
Phragmoplast kinaseGeneProductLOC_Os04g28260 (Rice Ensembl Gene)
Plasma membrane ATPaseGeneProductLOC_Os04g56160 (Rice Ensembl Gene)
Pr1bGeneProductLOC_Os01g28450 (Rice Ensembl Gene)
Pto kinase Interactor 1GeneProductLOC_Os05g04520 (Rice Ensembl Gene)
Pumilio GeneProductLOC_Os12g31000 (Rice Ensembl Gene) Leucine rich repeat
Pyrrolidone-CarboxylpeptidaseGeneProductLOC_Os03g25270 (Rice Ensembl Gene)
RACK1AGeneProductLOC_Os01g49290 (Rice Ensembl Gene) Also called GPB-LR/ RWD
RACGeneProductLOC_Os01g12900 (Rice Ensembl Gene)
RAD6GeneProductLOC_Os03g57790 (Rice Ensembl Gene) transcripts of both OsRad6 and OsSgt1 were found to be strongly expressed in the proliferating tissues such SAM
RAG-1GeneProductLOC_Os09g16260 (Rice Ensembl Gene) RISBZ1 + RPBF activated the RAG-1 promoter greater than RPBF alone, though RISBZ1 did not independently affect promoter activity
RALF24GeneProductLOC_Os11g26340 (Rice Ensembl Gene) Rapid ALkalinization Factor
RAGeneProductLOC_Os04g47080 (Rice Ensembl Gene) seed coat color, endosperm color
RAR1GeneProductLOC_Os02g33180 (Rice Ensembl Gene)
RAV1-likeGeneProductLOC_Os01g49830 (Rice Ensembl Gene)
RBGeneProductLOC_Os01g39580 (Rice Ensembl Gene) seed coat color, endosperm color
RCAA1GeneProductLOC_Os11g47970 (Rice Ensembl Gene) RuBisCO activase large isoform
RCD1-LGeneProductLOC_Os04g52340 (Rice Ensembl Gene) Also given LOC_Os07g37790 and LOC_Os03g57130
REB GeneProductLOC_Os03g58250 (Rice Ensembl Gene) Symbol assigned by Nemeth D and Hanumappa M (08/19/2010)
RIC1GeneProductLOC_Os01g37800 (Rice Ensembl Gene)
RIR 1bGeneProductLOC_Os05g48260 (Rice Ensembl Gene)
RISBZ1GeneProductLOC_Os07g08420 (Rice Ensembl Gene) Functionaly redundant and compensatory expression between RISBZI and RPBF. Double Knock-Down mutant (KD-RISBZ1/KD-RPBF) caused most expression change in OsLKR/SDH
RPBFGeneProductLOC_Os02g15350 (Rice Ensembl Gene) Functionaly redundant and compensatory expression between RISBZI and RPBF except for OsLKR/SDH double KD mutant (KD-RISBZ1/KD-RPBF) caused most expression change
RPK-TMK1 precursorGeneProductLOC_Os04g58910 (Rice Ensembl Gene) receptor protein kinase TMK1 precursor
RPS20GeneProductLOC_Os06g04290 (Rice Ensembl Gene) P35686
RSR1GeneProductLOC_Os01g40280 (Rice Ensembl Gene)
RUBQ1GeneProductLOC_Os02g06640 (Rice Ensembl Gene) Also called Polyubiquitin 6 Also given LOC_Os05g42424 which is not complete
Rab21GeneProductLOC_Os11g26790 (Rice Ensembl Gene) ABA related water stress + cold stress
Retrotransposon GeneProductLOC_Os12g24050 (Rice Ensembl Gene) Sulfotransferase
Ring FingerGeneProductLOC_Os01g01390 (Rice Ensembl Gene)
Ring ZFGeneProductLOC_Os04g48050 (Rice Ensembl Gene)
S-REP GeneProductLOC_Os04g47990 (Rice Ensembl Gene)
SAL1 GeneProductLOC_Os06g43590 (Rice Ensembl Gene)
SAM cmtrGeneProductLOC_Os02g06770 (Rice Ensembl Gene)
SAP11GeneProductLOC_Os08g39450 (Rice Ensembl Gene) Also called ZFP60
SBEIIaGeneProductLOC_Os04g33460 (Rice Ensembl Gene) expression diminished during grain filling at high temperatures
SBEIIbGeneProductLOC_Os02g32660 (Rice Ensembl Gene) expression diminished during grain filling at high temperatures
SCP40GeneProductLOC_Os07g46350 (Rice Ensembl Gene) Serine carboxypesidase
SCR-likeGeneProductLOC_Os02g45760 (Rice Ensembl Gene) Scarecrow transcriptional regulator-like protein
SET domain proteinGeneProductLOC_Os02g40770 (Rice Ensembl Gene) histone-lysine N-methyltransferase
SGT1GeneProductLOC_Os01g43540 (Rice Ensembl Gene) Responds to salicylic acid in chemically induced biotic response
SIP2GeneProductLOC_Os10g28350 (Rice Ensembl Gene) 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 1 Ethylene induced
SNAC1GeneProductLOC_Os03g60080 (Rice Ensembl Gene)
SNAC2GeneProductLOC_Os01g66120 (Rice Ensembl Gene) ABA-related
SPKGeneProductLOC_Os10g39420 (Rice Ensembl Gene) required for storage product accumulation during seed development seed-specific protein kinase
SPP1GeneProductLOC_Os01g27880 (Rice Ensembl Gene) sucrose-phosphatase 1
SPP2GeneProductLOC_Os02g05030 (Rice Ensembl Gene) sucrose-phosphatase 2
SPS-HvGeneProductLOC_Os02g09170 (Rice Ensembl Gene) sucrose-phosphate synthase-Hordeum vulgare= named after table III on Yamakawa et al. (2007)
SPS-O sppGeneProductLOC_Os08g20660 (Rice Ensembl Gene) sucrose-phosphate synthase-Oncidium spp= named after table III on Yamakawa et al. (2007)
SPS-SoGeneProductLOC_Os06g43630 (Rice Ensembl Gene) sucrose-phosphate synthase-Saccharum officinarum= named after table III on Yamakawa et al. (2007)
SPS-ZmGeneProductLOC_Os06g42824 (Rice Ensembl Gene) sucrose-phosphate synthase-Zea mays= named after table III on Yamakawa et al. (2007)
SSA1GeneProductLOC_Os05g41970 (Rice Ensembl Gene) 26 kDa alpha globulin
SSA2 GeneProductLOC_Os03g55730 (Rice Ensembl Gene) 10 kDa prolamin precursor
SSII-2GeneProductLOC_Os02g51070 (Rice Ensembl Gene) Also called ALK
SSII-3GeneProductLOC_Os06g12450 (Rice Ensembl Gene) expression diminished during grain filling at high temperatures
SSIIIa/ Flo5GeneProductLOC_Os08g09230 (Rice Ensembl Gene) expression diminished during grain filling at high temperatures
SSIIIbGeneProductLOC_Os04g53310 (Rice Ensembl Gene) Also called ALK
SSIIcGeneProductLOC_Os10g30156 (Rice Ensembl Gene) Also called ALK
SSIGeneProductLOC_Os06g06560 (Rice Ensembl Gene)
SSIVaGeneProductLOC_Os01g52250 (Rice Ensembl Gene) Also called ALK
SSIVbGeneProductLOC_Os05g45720 (Rice Ensembl Gene) Also called ALK
SUS1GeneProductLOC_Os03g28330 (Rice Ensembl Gene) Sucrose synthase 1
SUS2GeneProductLOC_Os06g09450 (Rice Ensembl Gene) Sucrose synthase 2
SUS3GeneProductLOC_Os07g42490 (Rice Ensembl Gene) Sucrose synthase 3
SUT1GeneProductLOC_Os03g07480 (Rice Ensembl Gene)
SUT2GeneProductLOC_Os12g44380 (Rice Ensembl Gene)
SUT3GeneProductLOC_Os10g26470 (Rice Ensembl Gene)
SUT4GeneProductLOC_Os02g58080 (Rice Ensembl Gene)
SUT5GeneProductLOC_Os02g36700 (Rice Ensembl Gene)
SWEET3aGeneProductLOC_Os05g12320 (Rice Ensembl Gene)
Sci2GeneProductLOC_Os01g42860 (Rice Ensembl Gene)
Sdr4GeneProductLOC_Os07g39700 (Rice Ensembl Gene)
Ser/thr PKGeneProductLOC_Os02g43290 (Rice Ensembl Gene)
Ser/thr PKGeneProductLOC_Os06g04880 (Rice Ensembl Gene)
Serine proteaseGeneProductLOC_Os04g45910 (Rice Ensembl Gene) Os04g0542900,
Shaggy kinaseGeneProductLOC_Os10g37740 (Rice Ensembl Gene)
Smt1-1GeneProductLOC_Os07g10600 (Rice Ensembl Gene) Cycloartenol-C24-methyltransferase
Stress-related proteinGeneProductLOC_Os07g47510 (Rice Ensembl Gene)
SuSy4GeneProductLOC_Os03g22120 (Rice Ensembl Gene) Sucrose synthase 4
SuSy5GeneProductLOC_Os02g58480 (Rice Ensembl Gene) Sucrose synthase 5
SuSy6GeneProductLOC_Os04g24430 (Rice Ensembl Gene) Sucrose synthase 6
Sub9GeneProductLOC_Os01g58290 (Rice Ensembl Gene) Amino acid transporters
TAP46GeneProductLOC_Os12g04290 (Rice Ensembl Gene)
TATCGeneProductLOC_Os01g31680 (Rice Ensembl Gene)
THF1GeneProductLOC_Os07g37250 (Rice Ensembl Gene) Inositol phosphatase
TLR31GeneProductLOC_Os02g53400 (Rice Ensembl Gene) Translational repressor MPT5/PUF4
TPR-PKGeneProductLOC_Os03g61010 (Rice Ensembl Gene) Putative protein kinase
TRAB1GeneProductLOC_Os08g36790 (Rice Ensembl Gene) Interaction with Wsi18 and Lea3 by orthology to H vulgare bZIP transcription factor TRAB1, ABA RESPONSIVE ELEMENT 1=ABA1
TRNA endonucleaseGeneProductLOC_Os11g38930 (Rice Ensembl Gene) catalytic C-terminal domain containing protein
TUBB3GeneProductLOC_Os06g46000 (Rice Ensembl Gene) Tubulin beta-3 chain
Terpene cyclasesGeneProductLOC_Os04g27190 (Rice Ensembl Gene)
Thioredoxin-likeGeneProductLOC_Os04g57310 (Rice Ensembl Gene) thiol-disulphide oxidoreductase DCC
TyrKGeneProductLOC_Os11g15340 (Rice Ensembl Gene) SAM dependent carboxyl methyltransferase
U2 snRNPGeneProductLOC_Os11g41820 (Rice Ensembl Gene)
UDP-glucosyl transferaseGeneProductLOC_Os04g12960 (Rice Ensembl Gene)
UGP GeneProductLOC_Os02g02550 (Rice Ensembl Gene)
UGP1 GeneProductLOC_Os09g38030 (Rice Ensembl Gene)
UGP2 GeneProductLOC_Os02g02560 (Rice Ensembl Gene)
UOS1GeneProductLOC_Os06g49120 (Rice Ensembl Gene) NAD(P)-binding/Rossman fold
USP1GeneProductLOC_Os07g47620 (Rice Ensembl Gene) ETFP adenine nucleotide
UbiGeneProductLOC_Os09g31031 (Rice Ensembl Gene)
Ubiquitin proteinaseGeneProductLOC_Os02g43760 (Rice Ensembl Gene) ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed
VDAC5GeneProductLOC_Os03g10510 (Rice Ensembl Gene)
VIP1-likeGeneProductLOC_Os06g02240 (Rice Ensembl Gene)
VP1GeneProductLOC_Os01g68370 (Rice Ensembl Gene) Interaction with Wsi18 and Lea3 by orthology to H vulgare

ABA-related Seed dormancy

Interaction with Wsi18 and Lea3 by orthology to H vulgare
VP2-likeGeneProductLOC_Os03g05750 (Rice Ensembl Gene)
Vin 2GeneProductLOC_Os02g01590 (Rice Ensembl Gene)
Vin1GeneProductLOC_Os04g45290 (Rice Ensembl Gene)
WRKY 51GeneProductLOC_Os04g21950 (Rice Ensembl Gene) ABA-inducible & GA-repressible WRKY 51 by itself also represses activation of Amy2A by GAMYB
WRKY 55GeneProductLOC_Os03g20550 (Rice Ensembl Gene)
WRKY 71GeneProductLOC_Os02g08440 (Rice Ensembl Gene) ABA-inducible & GA-repressible

Interaction between WRKY 51 and 71 enhances the binding affinity of WRKY71 to the Amy32b promoter

WRKY 71 by itself also represses activation of Amy2A by GAMYB
Wsi18GeneProductLOC_Os01g50910 (Rice Ensembl Gene) Interaction with TRAB1 and VP1 by orthology to H vulgare

ABA and GA induced water stress + cold stress member of the group 3 Lea family

Wsi18 promoter is active in the whole grain
Wx1GeneProductLOC_Os06g04200 (Rice Ensembl Gene) 30% less pre-mRNA in du1 mutant line

Granule-bound starch synthase

expression diminished during grain filling at high temperatures
YSL15GeneProductLOC_Os02g43410 (Rice Ensembl Gene) YELLOW STRIPE LIKE 15
YSL2GeneProductLOC_Os02g43370 (Rice Ensembl Gene) yellow stripe 1-like
ZF-likeGeneProductLOC_Os01g40990 (Rice Ensembl Gene)
ZIP-1aGeneProductLOC_Os12g13170 (Rice Ensembl Gene)
ZOS1-15GeneProductLOC_Os01g62190 (Rice Ensembl Gene) Salt-stress ABA related
b-1,3-Glucanase GeneProductLOC_Os03g25790 (Rice Ensembl Gene)
bHLH60GeneProductLOC_Os08g04390 (Rice Ensembl Gene) Helix-loop-helix TF
bZIPGeneProductLOC_Os11g06170 (Rice Ensembl Gene)
beta-fructofuranosidaseGeneProductLOC_Os03g20020 (Rice Ensembl Gene) Neutral/alkaline invertase 1 Assigned as NA-INV1 by Nemeth D and Hanumappa M (10/21/2010)
bhlh113GeneProductLOC_Os10g40740 (Rice Ensembl Gene) basic/helix-loop-helix 113
bip110GeneProductLOC_Os06g08530 (Rice Ensembl Gene) Putative ubiquitin-specific protease 23, BRI1-KD interacting protein 110
bip129 GeneProductLOC_Os08g40790 (Rice Ensembl Gene)
double-stranded beta-helix domainGeneProductLOC_Os11g06370 (Rice Ensembl Gene)
eif(iso)4gGeneProductLOC_Os04g42140 (Rice Ensembl Gene)
ferroportin1GeneProductLOC_Os06g36450 (Rice Ensembl Gene)
flavanone 3-hydroxylaseGeneProductLOC_Os08g37456 (Rice Ensembl Gene) 2-oxoglutarate (2OG) - Fe(II) oxygenase
grpA3GeneProductLOC_Os05g02780 (Rice Ensembl Gene)
msrB-1GeneProductLOC_Os03g24600 (Rice Ensembl Gene)
  • 2 more IDs found on Gramene. Hence called 1, 2 and 3 to differentiate. LOC_Os06g27760=msrB-2, LOC_Os05g33510=msrB-3 (D Nemeth and M Hanumappa 08/17/2010).
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phosphomannomutaseGeneProductLOC_Os06g28194 (Rice Ensembl Gene) Soluble epoxide hydrolase
prx61GeneProductLOC_Os04g59190 (Rice Ensembl Gene) Class III peroxidase 61
psbC GeneProductLOC_Os02g24632 (Rice Ensembl Gene)
rbcLGeneProductLOC_Os10g21268 (Rice Ensembl Gene)
taxane 10-beta-hydroxylaseGeneProductLOC_Os07g33480 (Rice Ensembl Gene) Glutamate synthase cytochrome P450 domain containing protein
vATP synthase CGeneProductLOC_Os05g51530 (Rice Ensembl Gene)

Annotated Interactions

No annotated interactions

Retrieved from "https://classic.wikipathways.org/index.php/Pathway:WP2278"
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