Selenium metabolism selenoproteins (Canis familiaris)

From WikiPathways

Revision as of 23:34, 20 February 2013 by MaintBot (Talk | contribs)
Jump to: navigation, search
2-5, 8, 10...AntioxidantenzymesThyroid hormonemetabolismSecsynthesisSe transportand storagecoding regionSec tRNA[ser]secTrXSeryl-tRNA[ser](sec)AUGUnkownfunctionINORGANIC SePhosphoseryl-tRNA[ser](sec)GSHSTOPSelenocysteyl-tRNA secBody proteinsSelenium binding proteinsSeC BiosynthesisSe = Selenium, SeMet = SelenoMethionine, SeC = Selcysteine, H2Se = Selenide, GSH = gluthatione, Trx = ThioredoxinORGANIC SeProtein foldingSelenoproteinsSeCRedoxsignallingmethyl transferaseDietSeCTranscription FactorsnucleusdemethylationSBP2GPX3SeCPstkSELENBP1SelenateSephs1RELASBP2FOSDIO1SEPP1SeCNfe2l2EEFSECJUNH2SeSp1Pouf2f1SeleniteSEPX1SelTTXNRD1GPX2SarsSARS2UGAEEFSECMethylSelenol MeSeHTXNRD2SELSSeMetSP3SeleniteSelHNFKB1Cystathionine g-lyaseRPL30SCLYSeMetDIO2SEPSECSSELKCremSELOGPX6SEPW1DIO3SELMTXNRD3TRNAU1APSelISephs2SelVSBP2TXNRD2GPX4TXNRD3SEPHS2Sep15FABP1SelenophosphateGPX1SelenateTXNRD1SEPN11, 6, 91, 7


Description

* Comments belonging to specific genes on the Selenoprotein pathway
    • TRXND3 gene: Although the geneID is correct, the sequence of this gene was guessed by analogy.
    • Cystathionine gamma-lyase is the mammalian form of bacterial methionine gamma-lyase
    • A selenoprotein database exists at: http://www.selenodb.org.

Comments

HomologyConvert 
This pathway was inferred from Homo sapiens pathway WP28(r30051) with a 54% conversion rate.

Try the New WikiPathways

View approved pathways at the new wikipathways.org.

Quality Tags

Ontology Terms

 

Bibliography

View all...
  1. Xu XM, Carlson BA, Mix H, Zhang Y, Saira K, Glass RS, Berry MJ, Gladyshev VN, Hatfield DL; ''Biosynthesis of selenocysteine on its tRNA in eukaryotes.''; PLoS Biol, 2007 PubMed Europe PMC Scholia
  2. Small-Howard AL, Berry MJ; ''Unique features of selenocysteine incorporation function within the context of general eukaryotic translational processes.''; Biochem Soc Trans, 2005 PubMed Europe PMC Scholia
  3. PubMed Europe PMC Scholia
  4. Soda K, Oikawa T, Esaki N; ''Vitamin B6 enzymes participating in selenium amino acid metabolism.''; Biofactors, 1999 PubMed Europe PMC Scholia
  5. Wang H, Zhang J, Yu H; ''Elemental selenium at nano size possesses lower toxicity without compromising the fundamental effect on selenoenzymes: comparison with selenomethionine in mice.''; Free Radic Biol Med, 2007 PubMed Europe PMC Scholia
  6. Papp LV, Lu J, Holmgren A, Khanna KK; ''From selenium to selenoproteins: synthesis, identity, and their role in human health.''; Antioxid Redox Signal, 2007 PubMed Europe PMC Scholia
  7. Xia Y, Hill KE, Byrne DW, Xu J, Burk RF; ''Effectiveness of selenium supplements in a low-selenium area of China.''; Am J Clin Nutr, 2005 PubMed Europe PMC Scholia
  8. PubMed Europe PMC Scholia
  9. Gromer S, Eubel JK, Lee BL, Jacob J; ''Human selenoproteins at a glance.''; Cell Mol Life Sci, 2005 PubMed Europe PMC Scholia
  10. Boosalis MG; ''The role of selenium in chronic disease.''; Nutr Clin Pract, 2008 PubMed Europe PMC Scholia
  11. Ip C, Hayes C; ''Tissue selenium levels in selenium-supplemented rats and their relevance in mammary cancer protection.''; Carcinogenesis, 1989 PubMed Europe PMC Scholia

History

View all...
CompareRevisionActionTimeUserComment
116454view09:56, 7 May 2021EweitzModified title
106051view11:56, 16 August 2019MaintBotHMDB identifier normalization
87649view08:54, 25 July 2016LindarieswijkOntology Term : 'selenoamino acid metabolic pathway' added !
71461view19:17, 17 October 2013MaintBotAutomated update of data sources
68525view22:09, 5 July 2013MaintBotUpdated to 2013 gpml schema
62718view03:16, 2 May 2013MaintBotUpdated UniProt data source
58842view23:34, 20 February 2013MaintBotUpdated Ensembl and UniProt data source
40679view21:50, 1 March 2011MaintBotRemoved redundant pathway information and comments
33969view18:27, 9 December 2009MaintBotAutomatic update of empty xrefs
32252view12:56, 15 August 2009MaintBotFixed text labels
31768view12:08, 14 August 2009MaintBotFixed group labels
31273view19:59, 13 August 2009MaintBotFixed text labels
30718view22:55, 29 July 2009MaintBotNew pathway

External references

DataNodes

View all...
NameTypeDatabase referenceComment
CremGeneProduct403887 (Entrez Gene)
Cystathionine g-lyaseGeneProduct
DIO1GeneProduct403635 (Entrez Gene)
DIO2GeneProduct490813 (Entrez Gene)
DIO3GeneProduct612596 (Entrez Gene)
EEFSECGeneProduct476514 (Entrez Gene)
FABP1GeneProduct403619 (Entrez Gene)
FOSGeneProductENSCAFG00000017040 (Ensembl)
GPX1GeneProduct442961 (Entrez Gene)
GPX2GeneProduct480356 (Entrez Gene)
GPX3GeneProduct489179 (Entrez Gene)
GPX4GeneProduct
GPX6GeneProduct
H2SeMetabolite
JUNGeneProductENSCAFG00000018897 (Ensembl)
MethylSelenol MeSeHMetabolite
NFKB1GeneProduct442859 (Entrez Gene)
Nfe2l2GeneProduct478813 (Entrez Gene)
Pouf2f1GeneProduct
PstkGeneProduct477855 (Entrez Gene)
RELAGeneProduct483729 (Entrez Gene)
RPL30GeneProduct480751 (Entrez Gene)
SARS2GeneProduct484518 (Entrez Gene)
SBP2GeneProduct
SCLYGeneProduct477422 (Entrez Gene)
SELENBP1GeneProduct475847 (Entrez Gene)
SELKGeneProduct476586 (Entrez Gene)
SELMGeneProduct611981 (Entrez Gene)
SELOGeneProduct481194 (Entrez Gene)
SELSGeneProduct607791 (Entrez Gene)
SEPHS2GeneProduct489904 (Entrez Gene)
SEPN1GeneProduct612211 (Entrez Gene)
SEPP1GeneProduct479346 (Entrez Gene)
SEPSECSGeneProduct488852 (Entrez Gene)
SEPW1GeneProduct612109 (Entrez Gene)
SEPX1GeneProduct611032 (Entrez Gene)
SP3GeneProduct488405 (Entrez Gene)
SarsGeneProduct490124 (Entrez Gene)
SeCMetaboliteHMDB03288 (HMDB)
SeMetMetaboliteHMDB03966 (HMDB)
SelHGeneProduct100303415 (Entrez Gene)
SelIGeneProduct100302747 (Entrez Gene)
SelTGeneProduct477113 (Entrez Gene)
SelVGeneProduct100303414 (Entrez Gene)
SelenateMetabolite
SeleniteMetabolite
SelenophosphateMetaboliteHMDB06407 (HMDB)
Sep15GeneProduct612493 (Entrez Gene)
Sephs1GeneProduct477999 (Entrez Gene)
Sephs2GeneProduct489904 (Entrez Gene)
Sp1GeneProduct486507 (Entrez Gene)
TRNAU1APGeneProduct478164 (Entrez Gene)
TXNRD1GeneProduct474536 (Entrez Gene)
TXNRD2GeneProduct608155 (Entrez Gene)
TXNRD3GeneProduct484619 (Entrez Gene)
UGAGeneProduct

Annotated Interactions

No annotated interactions
Retrieved from "https://classic.wikipathways.org/index.php/Pathway:WP1149"
Personal tools