Vitamin A and carotenoid metabolism (Bos taurus)

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5, 12, 14RA-binding proteinsNucleusDiet??Cytochrome P450 familyRE + dietary lipidsNuclear receptors?Rhodopsin formation11-cis binding proteinROL-binding proteinsPPAR pathwaysgap junction communicationchylomicronROL=retinol; RAL=retinaldehyde, RA = retinoic acid, RE = retinyl ester, RPE = retinal pigment epithelium Retinal pigment epithelium specificBlood???Liver/other organsEnterocyteRE + dietary lipidsRE + dietary lipidsBCMO1BetacaroteneLplVitamin D3BCO2BetacaroteneCRABP2ALDH1A1Adh1RBP1CRABP1all-trans Retinoic acidVitamin A acidDHRS3Sult1a1All-trans-13,14-dihydroretinolRdh10BCMO1RXRgRdh12BetacaroteneAWAT2RBP4RXRbRdh8RetinolVitamin ARdh12Alpha-Carotene13,14 dehydroretinalRdh5Cyp26a1ALDH1A2Lrat9-cis-RetinalARATALDH1A2Cyp2e1MAPKRETSATRetinalVitamin A aldehydeAldh1a3RARaSult2b1Beta-CryptoxanthinRARgRetinol dehydrogenasesBcmo1ViolaxanthinBetacaroteneCd36ALDH1A1all-transe 4-oxo RAall-trans RetinolVitamin A4-oxo-Retinoic acidRbp7LratAbcg5Aldh1a3Scarb1RARbZeaxanthinCanthaxanthinRDH5LycopeneCyp26b1RXRa13,14 dehydro RALuteinRPE65RetinolVitamin ARetinyl esterNpc1l1RBP29-cis-Retinoic acidbeta 10' apocorotenal9-cis-RetinolAstaxanthinAbcg8Scarb111-cis-Retinolall-trans RetinalRlbp1ADH411-cis-RetinalRetinyl ester1, 6-9, 1110, 162, 10, 133, 4, 15, 17


Description

This pathway is about carotenoid and vitamin A metabolism. The initial version was created by the NuGO focusteam on Carotenoid metabolism. It was used to test a text mining workflow which added some additional entities (see Waagmeester et al. 2009).

Comments

HomologyConvert 
This pathway was inferred from Homo sapiens pathway WP716(r46094) with a 73% conversion rate.

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Quality Tags

Ontology Terms

 

Bibliography

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  1. Sies H, Stahl W, Sundquist AR; ''Antioxidant functions of vitamins. Vitamins E and C, beta-carotene, and other carotenoids.''; Ann N Y Acad Sci, 1992 PubMed Europe PMC Scholia
  2. Boosalis MG, Snowdon DA, Tully CL, Gross MD; ''Acute phase response and plasma carotenoid concentrations in older women: findings from the nun study.''; Nutrition, 1996 PubMed Europe PMC Scholia
  3. VandenLangenberg GM, Brady WE, Nebeling LC, Block G, Forman M, Bowen PE, Stacewicz-Sapuntzakis M, Mares-Perlman JA; ''Influence of using different sources of carotenoid data in epidemiologic studies.''; J Am Diet Assoc, 1996 PubMed Europe PMC Scholia
  4. Ruhl CE, Everhart JE; ''Relation of elevated serum alanine aminotransferase activity with iron and antioxidant levels in the United States.''; Gastroenterology, 2003 PubMed Europe PMC Scholia
  5. Khachik F, Beecher GR, Goli MB, Lusby WR, Smith JC Jr; ''Separation and identification of carotenoids and their oxidation products in the extracts of human plasma.''; Anal Chem, 1992 PubMed Europe PMC Scholia
  6. Waagmeester A, Pezik P, Coort S, Tourniaire F, Evelo C, Rebholz-Schuhmann D; ''Pathway enrichment based on text mining and its validation on carotenoid and vitamin A metabolism.''; OMICS, 2009 PubMed Europe PMC Scholia
  7. Torma H, Rollman O, Binderup L, Michaelsson G; ''Vitamin D analogs affect the uptake and metabolism of retinol by human epidermal keratinocytes in culture.''; J Investig Dermatol Symp Proc, 1996 PubMed Europe PMC Scholia
  8. Hidiroglou M, Williams CJ; ''Interrelationships among liposoluble vitamins in ruminants.''; Am J Vet Res, 1986 PubMed Europe PMC Scholia
  9. Micozzi MS, Brown ED, Edwards BK, Bieri JG, Taylor PR, Khachik F, Beecher GR, Smith JC Jr; ''Plasma carotenoid response to chronic intake of selected foods and beta-carotene supplements in men.''; Am J Clin Nutr, 1992 PubMed Europe PMC Scholia
  10. Johansson S, Melhus H; ''Vitamin A antagonizes calcium response to vitamin D in man.''; J Bone Miner Res, 2001 PubMed Europe PMC Scholia
  11. Handelman GJ, Dratz EA, Reay CC, van Kuijk JG; ''Carotenoids in the human macula and whole retina.''; Invest Ophthalmol Vis Sci, 1988 PubMed Europe PMC Scholia
  12. Amir H, Karas M, Giat J, Danilenko M, Levy R, Yermiahu T, Levy J, Sharoni Y; ''Lycopene and 1,25-dihydroxyvitamin D3 cooperate in the inhibition of cell cycle progression and induction of differentiation in HL-60 leukemic cells.''; Nutr Cancer, 1999 PubMed Europe PMC Scholia
  13. Olmedilla B, Granado F, Blanco I, Rojas-Hidalgo E; ''Seasonal and sex-related variations in six serum carotenoids, retinol, and alpha-tocopherol.''; Am J Clin Nutr, 1994 PubMed Europe PMC Scholia
  14. Bendich A, Olson JA; ''Biological actions of carotenoids.''; FASEB J, 1989 PubMed Europe PMC Scholia
  15. Balmer JE, Blomhoff R; ''Gene expression regulation by retinoic acid.''; J Lipid Res, 2002 PubMed Europe PMC Scholia
  16. Huet F, Semama D, Maingueneau C, Charavel A, Nivelon JL; ''Vitamin A deficiency and nocturnal vision in teenagers with cystic fibrosis.''; Eur J Pediatr, 1997 PubMed Europe PMC Scholia
  17. Czeczuga-Semeniuk E, Wolczynski S, Markiewicz W; ''Preliminary identification of carotenoids in malignant and benign neoplasms of the breast and surrounding fatty tissue.''; Neoplasma, 2003 PubMed Europe PMC Scholia

History

View all...
CompareRevisionActionTimeUserComment
116514view10:50, 7 May 2021EweitzModified title
105994view11:52, 16 August 2019MaintBotHMDB identifier normalization
80754view15:24, 30 June 2015Mkutmonhomology conversion
74435view06:20, 20 April 2014EgonwModified description
74432view06:16, 20 April 2014EgonwFixed a PubMed ID.
71994view11:28, 24 October 2013MkutmonChanged Unknown -> GeneProduct for 29 annotated data nodes
71412view19:01, 17 October 2013MaintBotAutomated update of data sources
70174view00:47, 13 July 2013AlexanderPicoModified title
63361view22:23, 9 May 2013MaintBotUpdated to 2013 gpml schema
58817view23:18, 20 February 2013MaintBotUpdated Ensembl and UniProt data source
48133view05:51, 9 May 2012MaintBotUpdating from human to fix xref duplication
40533view19:30, 1 March 2011MaintBotRemoved redundant pathway information and comments
38716view19:33, 23 September 2010AlexanderPico
33774view00:07, 9 December 2009MaintBotAutomatic update of empty xrefs
32758view23:39, 3 September 2009MaintBotModified categories
30607view22:17, 29 July 2009MaintBotNew pathway

External references

DataNodes

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NameTypeDatabase referenceComment
11-cis-RetinalMetaboliteHMDB02152 (HMDB)
11-cis-RetinolMetaboliteHMDB06216 (HMDB)
13,14 dehydro RAMetabolite
13,14 dehydroretinalMetabolite
4-oxo-Retinoic acidMetaboliteHMDB06285 (HMDB)
9-cis-RetinalMetaboliteHMDB06218 (HMDB)
9-cis-Retinoic acidMetaboliteHMDB02369 (HMDB)
9-cis-RetinolMetaboliteHMDB06217 (HMDB)
ADH4GeneProduct520508 (Entrez Gene)
ALDH1A1GeneProduct281615 (Entrez Gene)
ALDH1A2GeneProduct535075 (Entrez Gene)
ARATProtein
AWAT2GeneProduct521298 (Entrez Gene)
Abcg564240 (Entrez Gene)
Abcg864241 (Entrez Gene)
Adh1GeneProduct
Aldh1a3220 (Entrez Gene)
All-trans-13,14-dihydroretinolMetaboliteHMDB11618 (HMDB)
Alpha-CaroteneMetaboliteHMDB03993 (HMDB)
AstaxanthinMetaboliteHMDB02204 (HMDB)
BCMO1GeneProduct534696 (Entrez Gene)
BCO2GeneProduct514135 (Entrez Gene)
Bcmo153630 (Entrez Gene)
Beta-CryptoxanthinMetaboliteHMDB02268 (HMDB)
BetacaroteneMetaboliteHMDB00561 (HMDB)
CRABP1GeneProduct282201 (Entrez Gene)
CRABP2GeneProduct493998 (Entrez Gene)
CanthaxanthinMetaboliteHMDB03154 (HMDB)
Cd36948 (Entrez Gene)
Cyp26a11592 (Entrez Gene)
Cyp26b156603 (Entrez Gene)
Cyp2e11571 (Entrez Gene)
DHRS3GeneProduct281482 (Entrez Gene)
Lpl4023 (Entrez Gene)
LratGeneProduct
LratENSG00000121207 (Ensembl)
LuteinMetaboliteHMDB03233 (HMDB)
LycopeneMetaboliteHMDB03000 (HMDB)
MAPKGeneProduct
Npc1l129881 (Entrez Gene)
RARa5914 (Entrez Gene)
RARb5915 (Entrez Gene)
RARg5916 (Entrez Gene)
RBP1GeneProduct537379 (Entrez Gene)
RBP2GeneProduct616639 (Entrez Gene)
RBP4GeneProduct281444 (Entrez Gene)
RDH5GeneProduct281448 (Entrez Gene)
RETSATGeneProduct614455 (Entrez Gene)
RPE656121 (Entrez Gene)
RXRa6256 (Entrez Gene)
RXRb6257 (Entrez Gene)
RXRg6258 (Entrez Gene)
Rbp7GeneProduct
Rdh10157506 (Entrez Gene)
Rdh12145226 (Entrez Gene)
Rdh55959 (Entrez Gene)
Rdh850700 (Entrez Gene)
Retinal Vitamin A aldehydeMetaboliteHMDB01358 (HMDB)
Retinol Vitamin AMetaboliteHMDB00305 (HMDB)
Retinol dehydrogenasesGeneProduct
Retinyl esterMetaboliteHMDB03598 (HMDB)
Rlbp16017 (Entrez Gene)
Scarb1949 (Entrez Gene)
Sult1a16817 (Entrez Gene)
Sult2b16820 (Entrez Gene)
ViolaxanthinMetaboliteHMDB03101 (HMDB)
Vitamin D3MetaboliteHMDB00876 (HMDB)
ZeaxanthinMetaboliteHMDB02789 (HMDB)
all-trans RetinalMetaboliteHMDB01358 (HMDB)
all-trans Retinoic acid Vitamin A acidMetaboliteHMDB01852 (HMDB)
all-trans Retinol Vitamin AMetaboliteHMDB00305 (HMDB)
all-transe 4-oxo RAMetabolite
beta 10' apocorotenalMetabolite

Annotated Interactions

No annotated interactions
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