This Arabidopsis seed development pathway network in GPML format was projected using the reference rice seed development network Pathway:WP2199 and the Arabidopsis to rice gene homology data sets. The green colored nodes (genes) represent where the Inparanoid-based gene homology was positively predicted based on the cutoffs used. The tool used for making the project was Pathway GeneSWAPPER. Method is described in the publication Hanumappa et al. (2013). This method creates a new projection, but preserves the interactions between nodes.
Comments
Arabidopsis thaliana, projected from Oryza sativa; Supp.File S5_output.gpml
Cooper B, Clarke JD, Budworth P, Kreps J, Hutchison D, Park S, Guimil S, Dunn M, Luginbühl P, Ellero C, Goff SA, Glazebrook J; ''A network of rice genes associated with stress response and seed development.''; Proc Natl Acad Sci U S A, 2003 PubMedEurope PMCScholia
Yamakawa H, Hirose T, Kuroda M, Yamaguchi T; ''Comprehensive expression profiling of rice grain filling-related genes under high temperature using DNA microarray.''; Plant Physiol, 2007 PubMedEurope PMCScholia
Zhu Y, Cai XL, Wang ZY, Hong MM; ''An interaction between a MYC protein and an EREBP protein is involved in transcriptional regulation of the rice Wx gene.''; J Biol Chem, 2003 PubMedEurope PMCScholia
Sun SJ, Guo SQ, Yang X, Bao YM, Tang HJ, Sun H, Huang J, Zhang HS; ''Functional analysis of a novel Cys2/His2-type zinc finger protein involved in salt tolerance in rice.''; J Exp Bot, 2010 PubMedEurope PMCScholia
Xiao B, Huang Y, Tang N, Xiong L; ''Over-expression of a LEA gene in rice improves drought resistance under the field conditions.''; Theor Appl Genet, 2007 PubMedEurope PMCScholia
Cao Y, Song F, Goodman RM, Zheng Z; ''Molecular characterization of four rice genes encoding ethylene-responsive transcriptional factors and their expressions in response to biotic and abiotic stress.''; J Plant Physiol, 2006 PubMedEurope PMCScholia
Bi YM, Kant S, Clarke J, Gidda S, Ming F, Xu J, Rochon A, Shelp BJ, Hao L, Zhao R, Mullen RT, Zhu T, Rothstein SJ; ''Increased nitrogen-use efficiency in transgenic rice plants over-expressing a nitrogen-responsive early nodulin gene identified from rice expression profiling.''; Plant Cell Environ, 2009 PubMedEurope PMCScholia
Kasai K, Kanno T, Akita M, Ikejiri-Kanno Y, Wakasa K, Tozawa Y; ''Identification of three shikimate kinase genes in rice: characterization of their differential expression during panicle development and of the enzymatic activities of the encoded proteins.''; Planta, 2005 PubMedEurope PMCScholia
Hirose T, Terao T; ''A comprehensive expression analysis of the starch synthase gene family in rice (Oryza sativa L.).''; Planta, 2004 PubMedEurope PMCScholia
Hattori T, Terada T, Hamasuna ST; ''Sequence and functional analyses of the rice gene homologous to the maize Vp1.''; Plant Mol Biol, 1994 PubMedEurope PMCScholia
Nakamura Y, Utsumi Y, Sawada T, Aihara S, Utsumi C, Yoshida M, Kitamura S; ''Characterization of the reactions of starch branching enzymes from rice endosperm.''; Plant Cell Physiol, 2010 PubMedEurope PMCScholia
Li X, Duan X, Jiang H, Sun Y, Tang Y, Yuan Z, Guo J, Liang W, Chen L, Yin J, Ma H, Wang J, Zhang D; ''Genome-wide analysis of basic/helix-loop-helix transcription factor family in rice and Arabidopsis.''; Plant Physiol, 2006 PubMedEurope PMCScholia
Wang Y, Gao M, Li Q, Wang L, Wang J, Jeon JS, Qu N, Zhang Y, He Z; ''OsRAR1 and OsSGT1 physically interact and function in rice basal disease resistance.''; Mol Plant Microbe Interact, 2008 PubMedEurope PMCScholia
Zou M, Guan Y, Ren H, Zhang F, Chen F; ''Characterization of alternative splicing products of bZIP transcription factors OsABI5.''; Biochem Biophys Res Commun, 2007 PubMedEurope PMCScholia
Ji H, Kim SR, Kim YH, Kim H, Eun MY, Jin ID, Cha YS, Yun DW, Ahn BO, Lee MC, Lee GS, Yoon UH, Lee JS, Lee YH, Suh SC, Jiang W, Yang JI, Jin P, McCouch SR, An G, Koh HJ; ''Inactivation of the CTD phosphatase-like gene OsCPL1 enhances the development of the abscission layer and seed shattering in rice.''; Plant J, 2010 PubMedEurope PMCScholia
Takasaki H, Maruyama K, Kidokoro S, Ito Y, Fujita Y, Shinozaki K, Yamaguchi-Shinozaki K, Nakashima K; ''The abiotic stress-responsive NAC-type transcription factor OsNAC5 regulates stress-inducible genes and stress tolerance in rice.''; Mol Genet Genomics, 2010 PubMedEurope PMCScholia
Zhang ZL, Xie Z, Zou X, Casaretto J, Ho TH, Shen QJ; ''A rice WRKY gene encodes a transcriptional repressor of the gibberellin signaling pathway in aleurone cells.''; Plant Physiol, 2004 PubMedEurope PMCScholia
Ashikari M, Sakakibara H, Lin S, Yamamoto T, Takashi T, Nishimura A, Angeles ER, Qian Q, Kitano H, Matsuoka M; ''Cytokinin oxidase regulates rice grain production.''; Science, 2005 PubMedEurope PMCScholia
Rzewuski G, Cornell KA, Rooney L, Burstenbinder K, Wirtz M, Hell R, Sauter M; ''OsMTN encodes a 5'-methylthioadenosine nucleosidase that is up-regulated during submergence-induced ethylene synthesis in rice (Oryza sativa L.).''; J Exp Bot, 2007 PubMedEurope PMCScholia
Kawakatsu T, Yamamoto MP, Touno SM, Yasuda H, Takaiwa F; ''Compensation and interaction between RISBZ1 and RPBF during grain filling in rice.''; Plant J, 2009 PubMedEurope PMCScholia
Wang YQ, Wei XL, Xu HL, Chai CL, Meng K, Zhai HL, Sun AJ, Peng YG, Wu B, Xiao GF, Zhu Z; ''Cell-wall invertases from rice are differentially expressed in Caryopsis during the grain filling stage.''; J Integr Plant Biol, 2008 PubMedEurope PMCScholia
Shobbar ZS, Oane R, Gamuyao R, De Palma J, Malboobi MA, Karimzadeh G, Javaran MJ, Bennett J; ''Abscisic acid regulates gene expression in cortical fiber cells and silica cells of rice shoots.''; New Phytol, 2008 PubMedEurope PMCScholia
Wong HL, Sakamoto T, Kawasaki T, Umemura K, Shimamoto K; ''Down-regulation of metallothionein, a reactive oxygen scavenger, by the small GTPase OsRac1 in rice.''; Plant Physiol, 2004 PubMedEurope PMCScholia
Wang E, Xu X, Zhang L, Zhang H, Lin L, Wang Q, Li Q, Ge S, Lu BR, Wang W, He Z; ''Duplication and independent selection of cell-wall invertase genes GIF1 and OsCIN1 during rice evolution and domestication.''; BMC Evol Biol, 2010 PubMedEurope PMCScholia
Weng J, Gu S, Wan X, Gao H, Guo T, Su N, Lei C, Zhang X, Cheng Z, Guo X, Wang J, Jiang L, Zhai H, Wan J; ''Isolation and initial characterization of GW5, a major QTL associated with rice grain width and weight.''; Cell Res, 2008 PubMedEurope PMCScholia
Radchuk VV, Borisjuk L, Sreenivasulu N, Merx K, Mock HP, Rolletschek H, Wobus U, Weschke W; ''Spatiotemporal profiling of starch biosynthesis and degradation in the developing barley grain.''; Plant Physiol, 2009 PubMedEurope PMCScholia
Sugimoto K, Takeuchi Y, Ebana K, Miyao A, Hirochika H, Hara N, Ishiyama K, Kobayashi M, Ban Y, Hattori T, Yano M; ''Molecular cloning of Sdr4, a regulator involved in seed dormancy and domestication of rice.''; Proc Natl Acad Sci U S A, 2010 PubMedEurope PMCScholia
Fabian T, Lorbiecke R, Umeda M, Sauter M; ''The cell cycle genes cycA1;1 and cdc2Os-3 are coordinately regulated by gibberellin in planta.''; Planta, 2000 PubMedEurope PMCScholia
Kang SG, Jeong HK, Lee E, Natarajan S; ''Characterization of a lipoate-protein ligase A gene of rice (Oryza sativa L.).''; Gene, 2007 PubMedEurope PMCScholia
Utsumi Y, Nakamura Y; ''Structural and enzymatic characterization of the isoamylase1 homo-oligomer and the isoamylase1-isoamylase2 hetero-oligomer from rice endosperm.''; Planta, 2006 PubMedEurope PMCScholia
Guo J, Wang F, Song J, Sun W, Zhang XS; ''The expression of Orysa;CycB1;1 is essential for endosperm formation and causes embryo enlargement in rice.''; Planta, 2010 PubMedEurope PMCScholia
Fu FF, Xue HW; ''Coexpression analysis identifies Rice Starch Regulator1, a rice AP2/EREBP family transcription factor, as a novel rice starch biosynthesis regulator.''; Plant Physiol, 2010 PubMedEurope PMCScholia
Shimada H, Koishihara H, Saito Y, Arashima Y, Furukawa T, Hayashi H; ''A rice antisense SPK transformant that lacks the accumulation of seed storage substances shows no correlation between sucrose concentration in phloem sap and demand for carbon sources in the sink organs.''; Plant Cell Physiol, 2004 PubMedEurope PMCScholia
Chae HS, Cho YG, Park MY, Lee MC, Eun MY, Kang BG, Kim WT; ''Hormonal cross-talk between auxin and ethylene differentially regulates the expression of two members of the 1-aminocyclopropane-1-carboxylate oxidase gene family in rice (Oryza sativa L.).''; Plant Cell Physiol, 2000 PubMedEurope PMCScholia
Xie Z, Zhang ZL, Zou X, Yang G, Komatsu S, Shen QJ; ''Interactions of two abscisic-acid induced WRKY genes in repressing gibberellin signaling in aleurone cells.''; Plant J, 2006 PubMedEurope PMCScholia
Komatsu S, Abbasi F, Kobori E, Fujisawa Y, Kato H, Iwasaki Y; ''Proteomic analysis of rice embryo: an approach for investigating Galpha protein-regulated proteins.''; Proteomics, 2005 PubMedEurope PMCScholia
Chen S, Yang Y, Shi W, Ji Q, He F, Zhang Z, Cheng Z, Liu X, Xu M; ''Badh2, encoding betaine aldehyde dehydrogenase, inhibits the biosynthesis of 2-acetyl-1-pyrroline, a major component in rice fragrance.''; Plant Cell, 2008 PubMedEurope PMCScholia
Shin JH, Kim SR, An G; ''Rice aldehyde dehydrogenase7 is needed for seed maturation and viability.''; Plant Physiol, 2009 PubMedEurope PMCScholia
Zeng D, Yan M, Wang Y, Liu X, Qian Q, Li J; ''Du1, encoding a novel Prp1 protein, regulates starch biosynthesis through affecting the splicing of Wxb pre-mRNAs in rice (Oryza sativa L.).''; Plant Mol Biol, 2007 PubMedEurope PMCScholia
Cho JI, Lee SK, Ko S, Kim HK, Jun SH, Lee YH, Bhoo SH, Lee KW, An G, Hahn TR, Jeon JS; ''Molecular cloning and expression analysis of the cell-wall invertase gene family in rice (Oryza sativa L.).''; Plant Cell Rep, 2005 PubMedEurope PMCScholia
Nakashima K, Tran LS, Van Nguyen D, Fujita M, Maruyama K, Todaka D, Ito Y, Hayashi N, Shinozaki K, Yamaguchi-Shinozaki K; ''Functional analysis of a NAC-type transcription factor OsNAC6 involved in abiotic and biotic stress-responsive gene expression in rice.''; Plant J, 2007 PubMedEurope PMCScholia
Yi N, Oh SJ, Kim YS, Jang HJ, Park SH, Jeong JS, Song SI, Choi YD, Kim JK; ''Analysis of the Wsi18, a stress-inducible promoter that is active in the whole grain of transgenic rice.''; Transgenic Res, 2011 PubMedEurope PMCScholia
Yamamoto MP, Onodera Y, Touno SM, Takaiwa F; ''Synergism between RPBF Dof and RISBZ1 bZIP activators in the regulation of rice seed expression genes.''; Plant Physiol, 2006 PubMedEurope PMCScholia
Ogo Y, Kobayashi T, Nakanishi Itai R, Nakanishi H, Kakei Y, Takahashi M, Toki S, Mori S, Nishizawa NK; ''A novel NAC transcription factor, IDEF2, that recognizes the iron deficiency-responsive element 2 regulates the genes involved in iron homeostasis in plants.''; J Biol Chem, 2008 PubMedEurope PMCScholia
Mao H, Sun S, Yao J, Wang C, Yu S, Xu C, Li X, Zhang Q; ''Linking differential domain functions of the GS3 protein to natural variation of grain size in rice.''; Proc Natl Acad Sci U S A, 2010 PubMedEurope PMCScholia
Song Y, You J, Xiong L; ''Characterization of OsIAA1 gene, a member of rice Aux/IAA family involved in auxin and brassinosteroid hormone responses and plant morphogenesis.''; Plant Mol Biol, 2009 PubMedEurope PMCScholia
Kobayashi T, Itai RN, Ogo Y, Kakei Y, Nakanishi H, Takahashi M, Nishizawa NK; ''The rice transcription factor IDEF1 is essential for the early response to iron deficiency, and induces vegetative expression of late embryogenesis abundant genes.''; Plant J, 2009 PubMedEurope PMCScholia
Yu G, Olsen KM, Schaal BA; ''Molecular evolution of the endosperm starch synthesis pathway genes in rice (Oryza sativa L.) and its wild ancestor, O. rufipogon L.''; Mol Biol Evol, 2011 PubMedEurope PMCScholia
Asano T, Kunieda N, Omura Y, Ibe H, Kawasaki T, Takano M, Sato M, Furuhashi H, Mujin T, Takaiwa F, Wu Cy CY, Tada Y, Satozawa T, Sakamoto M, Shimada H; ''Rice SPK, a calmodulin-like domain protein kinase, is required for storage product accumulation during seed development: phosphorylation of sucrose synthase is a possible factor.''; Plant Cell, 2002 PubMedEurope PMCScholia
Jain M, Khurana JP; ''Transcript profiling reveals diverse roles of auxin-responsive genes during reproductive development and abiotic stress in rice.''; FEBS J, 2009 PubMedEurope PMCScholia
Takano-Kai N, Jiang H, Kubo T, Sweeney M, Matsumoto T, Kanamori H, Padhukasahasram B, Bustamante C, Yoshimura A, Doi K, McCouch S; ''Evolutionary history of GS3, a gene conferring grain length in rice.''; Genetics, 2009 PubMedEurope PMCScholia
Kobayashi T, Ogo Y, Itai RN, Nakanishi H, Takahashi M, Mori S, Nishizawa NK; ''The transcription factor IDEF1 regulates the response to and tolerance of iron deficiency in plants.''; Proc Natl Acad Sci U S A, 2007 PubMedEurope PMCScholia
Kawakatsu T, Takaiwa F; ''Differences in transcriptional regulatory mechanisms functioning for free lysine content and seed storage protein accumulation in rice grain.''; Plant Cell Physiol, 2010 PubMedEurope PMCScholia
Nantel A, Quatrano RS; ''Characterization of three rice basic/leucine zipper factors, including two inhibitors of EmBP-1 DNA binding activity.''; J Biol Chem, 1996 PubMedEurope PMCScholia
Nakashima A, Chen L, Thao NP, Fujiwara M, Wong HL, Kuwano M, Umemura K, Shirasu K, Kawasaki T, Shimamoto K; ''RACK1 functions in rice innate immunity by interacting with the Rac1 immune complex.''; Plant Cell, 2008 PubMedEurope PMCScholia
Schultz TF, Medina J, Hill A, Quatrano RS; ''14-3-3 proteins are part of an abscisic acid-VIVIPAROUS1 (VP1) response complex in the Em promoter and interact with VP1 and EmBP1.''; Plant Cell, 1998 PubMedEurope PMCScholia
Mamatha Hanumappa, Justin Preece, Justin Elser, Denise Nemeth, Gina Bono, Kenny Wu and Pankaj Jaiswal; ''WikiPathways for plants: a community pathway curation portal and a case study in rice and arabidopsis seed development networks.''; Rice 2013, 6:14 doi:10.1186/1939-8433-6-14 (http://www.thericejournal.com/content/6/1/14/), 2013 PubMedEurope PMCScholia
Ohdan T, Francisco PB Jr, Sawada T, Hirose T, Terao T, Satoh H, Nakamura Y; ''Expression profiling of genes involved in starch synthesis in sink and source organs of rice.''; J Exp Bot, 2005 PubMedEurope PMCScholia
Yamamoto T, Mori Y, Ishibashi T, Uchiyama Y, Ueda T, Ando T, Hashimoto J, Kimura S, Sakaguchi K; ''Interaction between proliferating cell nuclear antigen (PCNA) and a DnaJ induced by DNA damage.''; J Plant Res, 2005 PubMedEurope PMCScholia
Ryoo N, Yu C, Park CS, Baik MY, Park IM, Cho MH, Bhoo SH, An G, Hahn TR, Jeon JS; ''Knockout of a starch synthase gene OsSSIIIa/Flo5 causes white-core floury endosperm in rice (Oryza sativa L.).''; Plant Cell Rep, 2007 PubMedEurope PMCScholia
Yan HB, Pan XX, Jiang HW, Wu GJ; ''Comparison of the starch synthesis genes between maize and rice: copies, chromosome location and expression divergence.''; Theor Appl Genet, 2009 PubMedEurope PMCScholia
Ogo Y, Itai RN, Nakanishi H, Kobayashi T, Takahashi M, Mori S, Nishizawa NK; ''The rice bHLH protein OsIRO2 is an essential regulator of the genes involved in Fe uptake under Fe-deficient conditions.''; Plant J, 2007 PubMedEurope PMCScholia
Thao NP, Chen L, Nakashima A, Hara S, Umemura K, Takahashi A, Shirasu K, Kawasaki T, Shimamoto K; ''RAR1 and HSP90 form a complex with Rac/Rop GTPase and function in innate-immune responses in rice.''; Plant Cell, 2007 PubMedEurope PMCScholia
Yamamoto T, Kimura S, Mori Y, Uchiyama Y, Ishibashi T, Hashimoto J, Sakaguchi K; ''Interaction between proliferating cell nuclear antigen and JUN-activation-domain-binding protein 1 in the meristem of rice, Oryza sativa L.''; Planta, 2003 PubMedEurope PMCScholia
Wang E, Wang J, Zhu X, Hao W, Wang L, Li Q, Zhang L, He W, Lu B, Lin H, Ma H, Zhang G, He Z; ''Control of rice grain-filling and yield by a gene with a potential signature of domestication.''; Nat Genet, 2008 PubMedEurope PMCScholia
Lee SK, Hwang SK, Han M, Eom JS, Kang HG, Han Y, Choi SB, Cho MH, Bhoo SH, An G, Hahn TR, Okita TW, Jeon JS; ''Identification of the ADP-glucose pyrophosphorylase isoforms essential for starch synthesis in the leaf and seed endosperm of rice (Oryza sativa L.).''; Plant Mol Biol, 2007 PubMedEurope PMCScholia
Jeong JS, Kim YS, Baek KH, Jung H, Ha SH, Do Choi Y, Kim M, Reuzeau C, Kim JK; ''Root-specific expression of OsNAC10 improves drought tolerance and grain yield in rice under field drought conditions.''; Plant Physiol, 2010 PubMedEurope PMCScholia
Hahn M, Walbot V; ''Effects of cold-treatment on protein synthesis and mRNA levels in rice leaves.''; Plant Physiol, 1989 PubMedEurope PMCScholia
Yi N, Kim YS, Jeong MH, Oh SJ, Jeong JS, Park SH, Jung H, Choi YD, Kim JK; ''Functional analysis of six drought-inducible promoters in transgenic rice plants throughout all stages of plant growth.''; Planta, 2010 PubMedEurope PMCScholia
Kawano Y, Akamatsu A, Hayashi K, Housen Y, Okuda J, Yao A, Nakashima A, Takahashi H, Yoshida H, Wong HL, Kawasaki T, Shimamoto K; ''Activation of a Rac GTPase by the NLR family disease resistance protein Pit plays a critical role in rice innate immunity.''; Cell Host Microbe, 2010 PubMedEurope PMCScholia
Niu X, Tang W, Huang W, Ren G, Wang Q, Luo D, Xiao Y, Yang S, Wang F, Lu BR, Gao F, Lu T, Liu Y; ''RNAi-directed downregulation of OsBADH2 results in aroma (2-acetyl-1-pyrroline) production in rice (Oryza sativa L.).''; BMC Plant Biol, 2008 PubMedEurope PMCScholia
Mao C, Wang S, Jia Q, Wu P; ''OsEIL1, a rice homolog of the Arabidopsis EIN3 regulates the ethylene response as a positive component.''; Plant Mol Biol, 2006 PubMedEurope PMCScholia
She KC, Kusano H, Koizumi K, Yamakawa H, Hakata M, Imamura T, Fukuda M, Naito N, Tsurumaki Y, Yaeshima M, Tsuge T, Matsumoto K, Kudoh M, Itoh E, Kikuchi S, Kishimoto N, Yazaki J, Ando T, Yano M, Aoyama T, Sasaki T, Satoh H, Shimada H; ''A novel factor FLOURY ENDOSPERM2 is involved in regulation of rice grain size and starch quality.''; Plant Cell, 2010 PubMedEurope PMCScholia
Cho JH, Kim HB, Kim HS, Choi SB; ''Identification and characterization of a rice MCM2 homologue required for DNA replication.''; BMB Rep, 2008 PubMedEurope PMCScholia
Arora R, Agarwal P, Ray S, Singh AK, Singh VP, Tyagi AK, Kapoor S; ''MADS-box gene family in rice: genome-wide identification, organization and expression profiling during reproductive development and stress.''; BMC Genomics, 2007 PubMedEurope PMCScholia
Umemura K, Satou J, Iwata M, Uozumi N, Koga J, Kawano T, Koshiba T, Anzai H, Mitomi M; ''Contribution of salicylic acid glucosyltransferase, OsSGT1, to chemically induced disease resistance in rice plants.''; Plant J, 2009 PubMedEurope PMCScholia
Xue W, Xing Y, Weng X, Zhao Y, Tang W, Wang L, Zhou H, Yu S, Xu C, Li X, Zhang Q; ''Natural variation in Ghd7 is an important regulator of heading date and yield potential in rice.''; Nat Genet, 2008 PubMedEurope PMCScholia
Mizutani M, Naganuma T, Tsutsumi K, Saitoh Y; ''The syncytium-specific expression of the Orysa;KRP3 CDK inhibitor: implication of its involvement in the cell cycle control in the rice (Oryza sativa L.) syncytial endosperm.''; J Exp Bot, 2010 PubMedEurope PMCScholia
Kawasaki T, Okumura S, Kishimoto N, Shimada H, Higo K, Ichikawa N; ''RNA maturation of the rice SPK gene may involve trans-splicing.''; Plant J, 1999 PubMedEurope PMCScholia
Yamamoto T, Mori Y, Ishibashi T, Uchiyama Y, Sakaguchi N, Furukawa T, Hashimoto J, Kimura S, Sakaguchi K; ''Characterization of Rad6 from a higher plant, rice (Oryza sativa L.) and its interaction with Sgt1, a subunit of the SCF ubiquitin ligase complex.''; Biochem Biophys Res Commun, 2004 PubMedEurope PMCScholia
Oh SJ, Kim YS, Kwon CW, Park HK, Jeong JS, Kim JK; ''Overexpression of the transcription factor AP37 in rice improves grain yield under drought conditions.''; Plant Physiol, 2009 PubMedEurope PMCScholia
Projected from TAIR, homologous to LOC_Os08g25734 (APS2a).
Also called AGPS2, ADP-glucose Pyrophosphorylase small subunit 2;
SSP genes examined was significantly suppressed in KD-RISBZ1/KD-RPBF
has two different transcripts= a:in leaf, b:in endosperm; binding with APL2 and Down regulation by RISBZ1 only happens with APS2b, binding with APL1 only happens with APS2a
expression diminished during grain filling at high temperatures
Projected from TAIR, homologous to LOC_Os07g08420 (RISBZ1).
Functionaly redundant and compensatory expression between RISBZI and RPBF.
Double Knock-Down mutant (KD-RISBZ1/KD-RPBF) caused most expression change in OsLKR/SDH
Projected from TAIR, homologous to LOC_Os07g08420 (RISBZ1).
Functionaly redundant and compensatory expression between RISBZI and RPBF.
Double Knock-Down mutant (KD-RISBZ1/KD-RPBF) caused most expression change in OsLKR/SDH
Functionaly redundant and compensatory expression between RISBZI and RPBF except for OsLKR/SDH
double KD mutant (KD-RISBZ1/KD-RPBF) caused most expression change
2 more IDs found on Gramene. Hence called 1, 2 and 3 to differentiate. LOC_Os06g27760=msrB-2, LOC_Os05g33510=msrB-3 (D Nemeth and M Hanumappa 08/17/2010).
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ABA-related Seed dormancy
Interaction with Wsi18 and Lea3 by orthology to H vulgareSSP genes examined was significantly suppressed in KD-RISBZ1/KD-RPBF has two different transcripts= a:in leaf, b:in endosperm; binding with APL2 and Down regulation by RISBZ1 only happens with APS2b, binding with APL1 only happens with APS2a
expression diminished during grain filling at high temperaturesExpression Patterns during Seed Development Correspond with Pigment Accumulation Patterns in Seeds
Plays a role in the removal of MDA that forms during seed desiccationSSP genes examined was significantly suppressed in KD-RISBZ1/KD-RPBF
expression diminished during grain filling at high temperaturesABA and GA induced water stress + cold stress member of the group 3 Lea family
Wsi18 promoter is active in the whole grainInteraction between WRKY 51 and 71 enhances the binding affinity of WRKY71 to the Amy32b promoter
WRKY 71 by itself also represses activation of Amy2A by GAMYBGranule-bound starch synthase
expression diminished during grain filling at high temperaturesAnnotated Interactions
No annotated interactions