Vitamin B6 (pyridoxine, pyridoxal, pyridoxamine) biosynthesis and salvage pathway (Zea mays)
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Description
Several forms of the vitamin are known, but pyridoxal 5’-phosphate (PLP) is the biologically active form and is a cofactor in various reactions of amino acid metabolism, including transamination, deamination, and decarboxylation, racemization and others. In plants PLP is synthesized de novo in the cytosol by the two-protein (PDX1/PDX2) PLP synthase complex from pentose phosphate, triose phosphate, and glutamine pre-cursors (reviewed in Fitzpatrick, 2011). PLP can also be made in chloroplasts or cytosol from pyridoxamine 5'-phosphate (PMP) or pyridoxine 5'-phosphate (PNP) by the salvage enzyme pyridoxamine 5'-phosphate oxidase. Pyridoxine glucosides are major forms of vitamin B6 in plants (Gregory and Ink, 1987). The details of vitamin B6 biosynthesis (especially its compartmentation) in plants are far from being elucidated. This diagram is an attempt to capture the current state of the art
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Ontology Terms
Bibliography
- Gerdes S, Lerma-Ortiz C, Frelin O, Seaver SM, Henry CS, de Crécy-Lagard V, Hanson AD; ''Plant B Vitamin Pathways and their Compartmentation: a Guide for the Perplexed.''; J Exp Bot, 2012 PubMed Europe PMC Scholia
History
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External references
DataNodes
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Name | Type | Database reference | Comment |
---|---|---|---|
(photo)chemical / enzymatic pyridoxal oxidation | GeneProduct | ||
1.1.1.65 | GeneProduct | 1.1.1.65 (Enzyme Nomenclature) | |
1.4.3.5 | GeneProduct | 1.4.3.5 (Enzyme Nomenclature) | |
2.4.1.160 | GeneProduct | 2.4.1.160 (Enzyme Nomenclature) | |
2.6.1.30 | GeneProduct | 2.6.1.30 (Enzyme Nomenclature) | |
2.7.1.35 | GeneProduct | 2.7.1.35 (Enzyme Nomenclature) | |
3.1.3.74 | GeneProduct | 3.1.3.74 (Enzyme Nomenclature) | |
4-pyridoxic acid | Metabolite | ||
5'-O-beta-D-glucosylpyridoxine | Metabolite | ||
ADP | Metabolite | ||
ATP | Metabolite | ||
D-glucose | Metabolite | ||
D-glyceraldehyde 3-P | Metabolite | ||
D-ribose 5P | Metabolite | ||
D-ribulose 5-P | Metabolite | ||
Dihydroxyacetone-P | Metabolite | ||
GRMZM2G022130 | GeneProduct | GRMZM2G022130 (Gramene Maize) | |
GRMZM2G023528 | GeneProduct | GRMZM2G023528 (Gramene Maize) | |
GRMZM2G061988 | GeneProduct | GRMZM2G061988 (Gramene Maize) | |
GRMZM2G069758 | GeneProduct | GRMZM2G069758 (Gramene Maize) | |
GRMZM2G120652 | GeneProduct | GRMZM2G120652 (Gramene Maize) | |
GRMZM2G398107 | GeneProduct | GRMZM2G398107 (Gramene Maize) | |
GRMZM5G850015 | GeneProduct | GRMZM5G850015 (Gramene Maize) | |
H2O2 | Metabolite | ||
H2O | Metabolite | ||
NH3 | Metabolite | ||
O2 | Metabolite | ||
OR | Metabolite | ||
PDX1 | GeneProduct | ||
PDX2 | GeneProduct | ||
PLP-dependent enzyme side-activity | GeneProduct | ||
PO4 | Metabolite | ||
glycosylpyridoxine hydrolase | GeneProduct | ||
pyridoxal 5'-phosphate | Metabolite | ||
pyridoxal | Metabolite | ||
pyridoxamine 5'-phosphate | Metabolite | ||
pyridoxamine | Metabolite | ||
pyridoxine | Metabolite | ||
vitamin B6 transporter | GeneProduct |
Annotated Interactions
No annotated interactions