Vitamin B7 (biotin) biosynthesis pathway (Zea mays)
From WikiPathways
Description
Biotin-dependent enzymes catalyze carboxylation, decarboxylation, or transcarboxylation reactions in the synthesis of fatty acids, isoleucine, and valine, and in gluconeogenesis. In plants, five biotin-containing proteins have been characterized so far, only four of them catalysts: two structurally distinct acetyl-CoA carboxylases, 3-methylcrotonyl-CoA carboxylase and geranoyl-CoA carboxylase. The fifth is a noncatalytic biotin protein that accumulates in seeds and is thought to play a role in storing biotin (Nikolau et al., 2003). Biotin is synthesized from pimeloyl-CoA in four steps, of which the first is peroxisomal; the other three steps are almost surely mitochondrial. The source of pimeloyl-CoA is not known in plants, but appears to differ from those in bacteria (Lin and Cronan, 2011). One of the possibilities - it might come from fatty acid degradation via the concerted action of β-, α-, and ω-oxidation enzymes in peroxisomes (Magliano et al., 2011)
The ligase that attaches biotin to carboxylases is present in cytosol, plastids, and mitochondria. Seed biotin-binding proteins are probably biotinylated by a special enzyme, not by the ligases that act on biotin-dependent enzymes (Job et al., 2001). Seed biotin-binding proteins may act as biotin reserves; if so, a biotinidase is required to cleave the biotin-lysine bond (Alban et al., 2000)
Quality Tags
Ontology Terms
Bibliography
- Nikolau BJ, Ohlrogge JB, Wurtele ES; ''Plant biotin-containing carboxylases.''; Arch Biochem Biophys, 2003 PubMed Europe PMC Scholia
- Picciocchi A, Douce R, Alban C; ''The plant biotin synthase reaction. Identification and characterization of essential mitochondrial accessory protein components.''; J Biol Chem, 2003 PubMed Europe PMC Scholia
- Gerdes S, Lerma-Ortiz C, Frelin O, Seaver SM, Henry CS, de Crécy-Lagard V, Hanson AD; ''Plant B Vitamin Pathways and their Compartmentation: a Guide for the Perplexed.''; J Exp Bot, 2012 PubMed Europe PMC Scholia
History
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External references
DataNodes
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Name | Type | Database reference | Comment |
---|---|---|---|
2.3.1.47 | Protein | 2.3.1.47 (Enzyme Nomenclature) | |
2.6.1.62 | Protein | 2.6.1.62 (Enzyme Nomenclature) | |
2.8.1.6 | Protein | 2.8.1.6 (Enzyme Nomenclature) | |
2.8.1.7 | Protein | 2.8.1.7 (Enzyme Nomenclature) | |
5-deoxyadenosine | Metabolite | ||
6.3.3.3 | Protein | 6.3.3.3 (Enzyme Nomenclature) | |
6.3.4.15 | Protein | 6.3.4.15 (Enzyme Nomenclature) | |
7,8-diaminopelargonic acid | Metabolite | ||
7-keto-8-aminopelargonic acid | Metabolite | ||
ADP | Metabolite | ||
ATP | Metabolite | ||
Apo-proteins | Protein | ||
CO2 | Metabolite | ||
CoA | Metabolite | ||
DAPA transporter | GeneProduct | ||
GRMZM2G013607 | GeneProduct | GRMZM2G013607 (Gramene Maize) | |
GRMZM2G032280 | GeneProduct | GRMZM2G032280 (Gramene Maize) | |
GRMZM2G087692 | GeneProduct | GRMZM2G087692 (Gramene Maize) | |
GRMZM2G095400 | GeneProduct | GRMZM2G095400 (Gramene Maize) | |
GRMZM2G102156 | GeneProduct | GRMZM2G102156 (Gramene Maize) | |
GRMZM2G110932 | GeneProduct | GRMZM2G110932 (Gramene Maize) | |
GRMZM2G307561 | GeneProduct | GRMZM2G307561 (Gramene Maize) | |
GRMZM2G322314 | GeneProduct | GRMZM2G322314 (Gramene Maize) | |
GRMZM2G452523 | GeneProduct | GRMZM2G452523 (Gramene Maize) | |
GRMZM2G704475 | GeneProduct | GRMZM2G704475 (Gramene Maize) | |
GRMZM5G856338 | GeneProduct | GRMZM5G856338 (Gramene Maize) | putative pseudogene |
KAPA transporter | GeneProduct | ||
L-alanine | Metabolite | ||
LOC100285690 | GeneProduct | LOC100285690 (Gramene Maize) | |
Methionine | Metabolite | ||
NADP | Metabolite | ||
NADPH | Metabolite | ||
PO4 | Metabolite | ||
S-adenosylhomocysteine | Metabolite | ||
S-adenosylmethio-2-oxobutanoate | Metabolite | ||
S-adenosylmethionine | Metabolite | ||
SAM-dependent methyl transferase (BioC-like) | Protein | ||
adrenodoxin reductase | Protein | Adx1 | |
adrenodoxin, mitochondrial ferredoxin | Protein | AdxR | |
biotin | Metabolite | ||
biotin transporter | GeneProduct | ||
biotin | Metabolite | ||
biotinidase for seed biotin-binding protein | Protein | ||
biotinylated-protein(s) | Metabolite | ||
dethiobiotin | Metabolite | ||
fatty acid catabolism | Pathway | ||
methylated acceptor | Metabolite | ||
pimeloyl-CoA | Metabolite | ||
seed biotin-binding protein biotin ligase | Protein | ||
seed biotin-binding protein | Protein | ||
unknown methyl acceptor | Metabolite |
Annotated Interactions
No annotated interactions