Download All Pathways

From WikiPathways

Contents 1 GPML 2 BioPAX 3 Eu.Gene 4 Plain text 5 PDF 6 SVG 7 PNG 8 Flatfile

All pathways includes non-featured pathways, but still excludes test or tutorial pathways (such as the Sandbox pathway).

GPML

Click on one of the links below to download all pathways in GPML format. You can view and edit GPML files in PathVisio. You can also use GPML files for analysis in both PathVisio and Cytoscape.

Unspecified Acetobacterium woodii Anopheles gambiae Arabidopsis thaliana Bacillus subtilis Beta vulgaris Brassica napus Bos taurus Caenorhabditis elegans Canis familiaris Clostridium thermocellum Caulobacter vibrioides Danio rerio Daphnia magna Daphnia pulex Drosophila melanogaster Escherichia coli Equus caballus Gallus gallus Glycine max Gibberella zeae Homo sapiens Hordeum vulgare Mus musculus Mycobacterium tuberculosis Oryza sativa Ovis aries Pan troglodytes Populus trichocarpa Rattus norvegicus Saccharomyces cerevisiae Solanum lycopersicum Sus scrofa Triticum aestivum Vitis vinifera Xenopus tropicalis Zea mays Plasmodium falciparum

BioPAX

Click on one of the links below to download all pathways in BioPAX level 3 format.

Unspecified Acetobacterium woodii Anopheles gambiae Arabidopsis thaliana Bacillus subtilis Beta vulgaris Brassica napus Bos taurus Caenorhabditis elegans Canis familiaris Clostridium thermocellum Caulobacter vibrioides Danio rerio Daphnia magna Daphnia pulex Drosophila melanogaster Escherichia coli Equus caballus Gallus gallus Glycine max Gibberella zeae Homo sapiens Hordeum vulgare Mus musculus Mycobacterium tuberculosis Oryza sativa Ovis aries Pan troglodytes Populus trichocarpa Rattus norvegicus Saccharomyces cerevisiae Solanum lycopersicum Sus scrofa Triticum aestivum Vitis vinifera Xenopus tropicalis Zea mays Plasmodium falciparum

Eu.Gene

Click on one of the links below to download all pathways in the Eu.Gene format (pwf). Eu.Gene is a tool for microarray analysis in context of biological pathways (read more).

Unspecified Acetobacterium woodii Anopheles gambiae Arabidopsis thaliana Bacillus subtilis Beta vulgaris Brassica napus Bos taurus Caenorhabditis elegans Canis familiaris Clostridium thermocellum Caulobacter vibrioides Danio rerio Daphnia magna Daphnia pulex Drosophila melanogaster Escherichia coli Equus caballus Gallus gallus Glycine max Gibberella zeae Homo sapiens Hordeum vulgare Mus musculus Mycobacterium tuberculosis Oryza sativa Ovis aries Pan troglodytes Populus trichocarpa Rattus norvegicus Saccharomyces cerevisiae Solanum lycopersicum Sus scrofa Triticum aestivum Vitis vinifera Xenopus tropicalis Zea mays Plasmodium falciparum

Plain text

Click on one of the links below to download all pathways in plain text format. This format contains a list of all datanodes, with the identifier in the first column, and the database system in the second column.

Unspecified Acetobacterium woodii Anopheles gambiae Arabidopsis thaliana Bacillus subtilis Beta vulgaris Brassica napus Bos taurus Caenorhabditis elegans Canis familiaris Clostridium thermocellum Caulobacter vibrioides Danio rerio Daphnia magna Daphnia pulex Drosophila melanogaster Escherichia coli Equus caballus Gallus gallus Glycine max Gibberella zeae Homo sapiens Hordeum vulgare Mus musculus Mycobacterium tuberculosis Oryza sativa Ovis aries Pan troglodytes Populus trichocarpa Rattus norvegicus Saccharomyces cerevisiae Solanum lycopersicum Sus scrofa Triticum aestivum Vitis vinifera Xenopus tropicalis Zea mays Plasmodium falciparum

PDF

Click on one of the links below to download all pathways in Portable Document Format (PDF).

Unspecified Acetobacterium woodii Anopheles gambiae Arabidopsis thaliana Bacillus subtilis Beta vulgaris Brassica napus Bos taurus Caenorhabditis elegans Canis familiaris Clostridium thermocellum Caulobacter vibrioides Danio rerio Daphnia magna Daphnia pulex Drosophila melanogaster Escherichia coli Equus caballus Gallus gallus Glycine max Gibberella zeae Homo sapiens Hordeum vulgare Mus musculus Mycobacterium tuberculosis Oryza sativa Ovis aries Pan troglodytes Populus trichocarpa Rattus norvegicus Saccharomyces cerevisiae Solanum lycopersicum Sus scrofa Triticum aestivum Vitis vinifera Xenopus tropicalis Zea mays Plasmodium falciparum

SVG

Click on one of the links below to download all pathways in SVG format. The SVG files can be used to create high quality images for publication purposes. You can edit and convert the SVG files using Inkscape.

Unspecified Acetobacterium woodii Anopheles gambiae Arabidopsis thaliana Bacillus subtilis Beta vulgaris Brassica napus Bos taurus Caenorhabditis elegans Canis familiaris Clostridium thermocellum Caulobacter vibrioides Danio rerio Daphnia magna Daphnia pulex Drosophila melanogaster Escherichia coli Equus caballus Gallus gallus Glycine max Gibberella zeae Homo sapiens Hordeum vulgare Mus musculus Mycobacterium tuberculosis Oryza sativa Ovis aries Pan troglodytes Populus trichocarpa Rattus norvegicus Saccharomyces cerevisiae Solanum lycopersicum Sus scrofa Triticum aestivum Vitis vinifera Xenopus tropicalis Zea mays Plasmodium falciparum

PNG

Click on one of the links below to download all pathways in the Portable Network Graphics (png) format.

Unspecified Acetobacterium woodii Anopheles gambiae Arabidopsis thaliana Bacillus subtilis Beta vulgaris Brassica napus Bos taurus Caenorhabditis elegans Canis familiaris Clostridium thermocellum Caulobacter vibrioides Danio rerio Daphnia magna Daphnia pulex Drosophila melanogaster Escherichia coli Equus caballus Gallus gallus Glycine max Gibberella zeae Homo sapiens Hordeum vulgare Mus musculus Mycobacterium tuberculosis Oryza sativa Ovis aries Pan troglodytes Populus trichocarpa Rattus norvegicus Saccharomyces cerevisiae Solanum lycopersicum Sus scrofa Triticum aestivum Vitis vinifera Xenopus tropicalis Zea mays Plasmodium falciparum

Flatfile

Click on one of the links below to download all pathways in either a tab-delimited or HTML table format. The output includes gene, protein and small molecule contents. You can choose between "original" and "mapped" versions, which refer to whether only the original identifiers are provided or if you want them mapped to all available identifier systems.

• Anopheles gambiae (original: tab, html) (mapped: tab, html)
• Arabidopsis thaliana (original: tab, html) (mapped: tab, html)
• Bos taurus (original: tab, html) (mapped: tab, html)
• Bacillus subtilis (original: tab, html) (mapped: tab, html)
• Caenorhabditis elegans (original: tab, html) (mapped: tab, html)
• Canis familiaris (original: tab, html) (mapped: tab, html)
• Danio rerio (original: tab, html) (mapped: tab, html)
• Drosophila melanogaster (original: tab, html) (mapped: tab, html)
• Equus caballus (original: tab, html) (mapped: tab, html)
• Gallus gallus (original: tab, html) (mapped: tab, html)
• Homo sapiens (original: tab, html) (mapped: tab, html)
• Mus Musculus (original: tab, html) (mapped: tab, html)
• Mycobacterium tuberculosis (original: tab, html) (mapped: tab, html)
• Oryza sativa (original: tab, html) (mapped: tab, html)
• Pan troglodytes (original: tab, html) (mapped: tab, html)
• Rattus norvegicus (original: tab, html) (mapped: tab, html)
• Saccharomyces cerevisiae (original: tab, html) (mapped: tab, html)
• Sus scrofa (original: tab, html) (mapped: tab, html)
• Zea mays (original: tab, html) (mapped: tab, html)