Citrate cycle (TCA cycle) (Mycobacterium tuberculosis)
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Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Source: KEGG (http://www.genome.jp/kegg-bin/highlight_pathway?scale=1.0&map=map00020)
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Name | Type | Database reference | Comment |
---|---|---|---|
(S)-Malate | Metabolite | C00149 (Kegg Compound) | |
2-(alpha-Hydroxyethyl)thiamine diphosphate | Metabolite | C05125 (Kegg Compound) | |
2-Oxoglutarate | Metabolite | C00026 (Kegg Compound) | |
2-oxoglutarate ferredoxin oxidoreductase subunit beta | GeneProduct | Rv2454c (TubercuList) | Original kegg element: gene;2;mtu:Rv2454c mtu:Rv2455c |
Acetyl-CoA | Metabolite | C00024 (Kegg Compound) | |
Alanine, aspartate and glutamate metabolism | Pathway | WP1617 (WikiPathways) | |
Arginine and proline metabolism | Pathway | WP1621 (WikiPathways) | |
Ascorbate and aldarate metabolism | Pathway | WP1622 (WikiPathways) | |
Citrate | Metabolite | C00158 (Kegg Compound) | |
D-Glutamine and D-glutamate metabolism | Pathway | WP1643 (WikiPathways) | |
Enzyme N6-(dihydrolipoyl)lysine | Metabolite | C15973 (Kegg Compound) | |
Enzyme N6-(lipoyl)lysine | Metabolite | C15972 (Kegg Compound) | |
Fatty acid biosynthesis | Pathway | WP1647 (WikiPathways) | |
Fatty acid elongation in mitochondria | Pathway | ||
Fatty acid metabolism | Pathway | WP1648 (WikiPathways) | |
Fumarate | Metabolite | C00122 (Kegg Compound) | |
Glycolysis / Gluconeogenesis | Pathway | WP1660 (WikiPathways) | |
Glyoxylate and dicarboxylate metabolism | Pathway | WP1661 (WikiPathways) | |
Isocitrate | Metabolite | C00311 (Kegg Compound) | |
Oxaloacetate | Metabolite | C00036 (Kegg Compound) | |
Oxalosuccinate | Metabolite | C05379 (Kegg Compound) | |
Phosphoenolpyruvate | Metabolite | C00074 (Kegg Compound) | |
Pyruvate | Metabolite | C00022 (Kegg Compound) | |
Succinate | Metabolite | C00042 (Kegg Compound) | |
Succinyl-CoA | Metabolite | C00091 (Kegg Compound) | |
Thiamin diphosphate | Metabolite | C00068 (Kegg Compound) | |
Tyrosine metabolism | Pathway | WP1714 (WikiPathways) | |
Valine, leucine and isoleucine degradation | Pathway | WP1717 (WikiPathways) | |
[Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine | Metabolite | C16255 (Kegg Compound) | |
[Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine | Metabolite | C16254 (Kegg Compound) | |
aceE | GeneProduct | Rv2241 (TubercuList) | Original kegg element: gene;51;mtu:Rv0843 mtu:Rv2241 mtu:Rv2496c mtu:Rv2497c |
acn | GeneProduct | Rv1475c (TubercuList) | Original kegg element: gene;15;mtu:Rv1475c |
cis-Aconitate | Metabolite | C00417 (Kegg Compound) | |
citA | GeneProduct | Rv0889c (TubercuList) | Original kegg element: gene;17;mtu:Rv0889c mtu:Rv0896 mtu:Rv1131 |
citE | GeneProduct | Rv2498c (TubercuList) | Original kegg element: gene;60;mtu:Rv2498c mtu:Rv3075c |
cpd:C05381 | Metabolite | C05381 (Kegg Compound) | |
dehydrogenase | GeneProduct | Rv0843 (TubercuList) | Original kegg element: gene;51;mtu:Rv0843 mtu:Rv2241 mtu:Rv2496c mtu:Rv2497c |
dlaT | GeneProduct | Rv2215 (TubercuList) | Original kegg element: gene;6;mtu:Rv2215 |
frdA | GeneProduct | Rv1552 (TubercuList) | Original kegg element: gene;1;mtu:Rv0247c mtu:Rv0248c mtu:Rv1552 mtu:Rv1553 mtu:Rv1554 mtu:Rv1555 mtu:Rv3316 mtu:Rv3317 mtu:Rv3318 mtu:Rv3319 |
frdB | GeneProduct | Rv1553 (TubercuList) | Original kegg element: gene;1;mtu:Rv0247c mtu:Rv0248c mtu:Rv1552 mtu:Rv1553 mtu:Rv1554 mtu:Rv1555 mtu:Rv3316 mtu:Rv3317 mtu:Rv3318 mtu:Rv3319 |
frdC | GeneProduct | Rv1554 (TubercuList) | Original kegg element: gene;1;mtu:Rv0247c mtu:Rv0248c mtu:Rv1552 mtu:Rv1553 mtu:Rv1554 mtu:Rv1555 mtu:Rv3316 mtu:Rv3317 mtu:Rv3318 mtu:Rv3319 |
frdD | GeneProduct | Rv1555 (TubercuList) | Original kegg element: gene;1;mtu:Rv0247c mtu:Rv0248c mtu:Rv1552 mtu:Rv1553 mtu:Rv1554 mtu:Rv1555 mtu:Rv3316 mtu:Rv3317 mtu:Rv3318 mtu:Rv3319 |
fumC | GeneProduct | Rv1098c (TubercuList) | Original kegg element: gene;14;mtu:Rv1098c |
fumarate reductase iron-sulfur subunit (EC:1.3.99.1) | GeneProduct | Rv0247c (TubercuList) | Original kegg element: gene;1;mtu:Rv0247c mtu:Rv0248c mtu:Rv1552 mtu:Rv1553 mtu:Rv1554 mtu:Rv1555 mtu:Rv3316 mtu:Rv3317 mtu:Rv3318 mtu:Rv3319 |
gltA1 | GeneProduct | Rv1131 (TubercuList) | Original kegg element: gene;17;mtu:Rv0889c mtu:Rv0896 mtu:Rv1131 |
gltA | GeneProduct | Rv0896 (TubercuList) | Original kegg element: gene;17;mtu:Rv0889c mtu:Rv0896 mtu:Rv1131 |
hypothetical protein | GeneProduct | Rv3075c (TubercuList) | Original kegg element: gene;60;mtu:Rv2498c mtu:Rv3075c |
icd1 | GeneProduct | Rv3339c (TubercuList) | Original kegg element: gene;9;mtu:Rv0066c mtu:Rv3339c |
icd2 | GeneProduct | Rv0066c (TubercuList) | Original kegg element: gene;9;mtu:Rv0066c mtu:Rv3339c |
ko:K00030 | GeneProduct | K00030 (Kegg ortholog) | |
ko:K00164 | GeneProduct | K00164 (Kegg ortholog) | |
ko:K00169 ko:K00170 ko:K00172 ko:K00171 | GeneProduct | K00169... (Kegg ortholog) | |
ko:K00234 ko:K00235 ko:K00236 ko:K00237 | GeneProduct | K00234... (Kegg ortholog) | |
ko:K01610 | GeneProduct | K01610 (Kegg ortholog) | |
ko:K01648 | GeneProduct | K01648 (Kegg ortholog) | |
ko:K01899 ko:K01900 | GeneProduct | K01899... (Kegg ortholog) | |
lpdA | GeneProduct | Rv3303c (TubercuList) | Original kegg element: gene;55;mtu:Rv0462 mtu:Rv0794c mtu:Rv3303c |
lpd | GeneProduct | Rv0462 (TubercuList) | Original kegg element: gene;55;mtu:Rv0462 mtu:Rv0794c mtu:Rv3303c |
mdh | GeneProduct | Rv1240 (TubercuList) | Original kegg element: gene;18;mtu:Rv1240 |
oxidoreductase alpha subunit | GeneProduct | Rv2455c (TubercuList) | Original kegg element: gene;2;mtu:Rv2454c mtu:Rv2455c |
oxidoreductase | GeneProduct | Rv0794c (TubercuList) | Original kegg element: gene;3;mtu:Rv0462 mtu:Rv0794c mtu:Rv3303c |
pca | GeneProduct | Rv2967c (TubercuList) | Original kegg element: gene;19;mtu:Rv2967c |
pckA | GeneProduct | Rv0211 (TubercuList) | Original kegg element: gene;62;mtu:Rv0211 |
pdhA | GeneProduct | EBMYCG00000002509 (Ensembl) | Original kegg element: gene;53;mtu:Rv0843 mtu:Rv2241 mtu:Rv2496c mtu:Rv2497c |
pdhA | GeneProduct | Rv2497c (TubercuList) | Original kegg element: gene;51;mtu:Rv0843 mtu:Rv2241 mtu:Rv2496c mtu:Rv2497c |
pdhB | GeneProduct | Rv2496c (TubercuList) | Original kegg element: gene;53;mtu:Rv0843 mtu:Rv2241 mtu:Rv2496c mtu:Rv2497c |
pdhC | GeneProduct | Rv2495c (TubercuList) | Original kegg element: gene;57;mtu:Rv2495c |
sdhA | GeneProduct | Rv0248c (TubercuList) | Original kegg element: gene;1;mtu:Rv0247c mtu:Rv0248c mtu:Rv1552 mtu:Rv1553 mtu:Rv1554 mtu:Rv1555 mtu:Rv3316 mtu:Rv3317 mtu:Rv3318 mtu:Rv3319 |
sdhA | GeneProduct | Rv3318 (TubercuList) | Original kegg element: gene;1;mtu:Rv0247c mtu:Rv0248c mtu:Rv1552 mtu:Rv1553 mtu:Rv1554 mtu:Rv1555 mtu:Rv3316 mtu:Rv3317 mtu:Rv3318 mtu:Rv3319 |
sdhB | GeneProduct | Rv3319 (TubercuList) | Original kegg element: gene;1;mtu:Rv0247c mtu:Rv0248c mtu:Rv1552 mtu:Rv1553 mtu:Rv1554 mtu:Rv1555 mtu:Rv3316 mtu:Rv3317 mtu:Rv3318 mtu:Rv3319 |
sdhC | GeneProduct | Rv3316 (TubercuList) | Original kegg element: gene;1;mtu:Rv0247c mtu:Rv0248c mtu:Rv1552 mtu:Rv1553 mtu:Rv1554 mtu:Rv1555 mtu:Rv3316 mtu:Rv3317 mtu:Rv3318 mtu:Rv3319 |
sdhD | GeneProduct | Rv3317 (TubercuList) | Original kegg element: gene;1;mtu:Rv0247c mtu:Rv0248c mtu:Rv1552 mtu:Rv1553 mtu:Rv1554 mtu:Rv1555 mtu:Rv3316 mtu:Rv3317 mtu:Rv3318 mtu:Rv3319 |
sucC | GeneProduct | Rv0951 (TubercuList) | Original kegg element: gene;7;mtu:Rv0951 mtu:Rv0952 |
sucD | GeneProduct | Rv0952 (TubercuList) | Original kegg element: gene;7;mtu:Rv0951 mtu:Rv0952 |
Annotated Interactions
No annotated interactions