Flowering time pathway (Oryza sativa)

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FLOWERINGNF-YA6NF-YA5NF-YA10bNF-YA10aNF-YA1NF-YA3NF-YA2NF-YA8NF-YA4 15, 110SDLDNo orthologs in riceNF-YA subunitPR COMPLEXFACSDV51, 93To be moved into PathwayShort DayTranscript to ProteinKEYActivation; Up-regulationInhibition; Down-regulationVernalizationNo orthologs foundBindComplexExpression is alteredCo-regulationParalogsMAF3SDG26ELF7VRN2bZIP72CSD2Dof12PIE1OsbZIP10ZOS9-19EZ3EDM2ZnF36ELF3bOsMADS29OsMADS5PCFS4Ehd1MAF2FUS9ELF9RCN1OsABF2AP2CDF2aVRN1OsLDOsMADS31GF14eHd1NDPK2ROC5FBO10ZTLaVIL2ID1PHYBPRR59MAF1CDC73MADS18SPYCKA1CKB1FCAJMJ706AGL9OsMADS27LUXOSE2JMJ704Hd2Gal1NF-YC11GAMybRCN2LEC1AOsPEPbhlh79FLCLDL3SEF1OsCRY1bOsMADS14FPF1RBX1TOE1NF-YB4LHYSRR1FBO10CRY2OsMADS7ES43aNF-YC13PAF1HAP3DELF5NF-YC8SDG25TICDI19-2miRNANF-YC10LEC1BPIE1OsMADS8PHYALWDCOP1DET1?FRL2ELF8LFL1bhlh102bhlh105OsAREB3COL9aFIO1FVEPHYCESD4aHd1FTL1LHP1LKP2EFSFBX77TOC1COP1FRL1CDF3PHYB/PHYDPRMT5bhlh102ABH1VIP4aVRN5aNF-YB13ELF3aFD1FPAOsCO3GIRFT1ATX-1OsSPL14NF-YB11HAP3ISLR1HOS1SLR1CDF5FRICKB4NF-YB3OsHUA2PIN1OSCPS1JARID1CFLOsCam2COL5SPA2ZOS1-20HAP3FSPL13GAPPR73DCAF1OsMADS51VIL2EZ3FYPP3OsMADS6CUL4BOsPRP3VEFELF4OsMADS50NF-YC2aDPBF3OsMADS56JMJ703RAV1-like1GF14cESP4OsMADS22OsCDF1ARP6SRT2OsMADS1OsMFT1REC14ZTLaEZ1SINAT5NF-YC2FLKLHP1FLXVIP2FIEPFT1ATL6lGF14bNF-YC1MSI1SPA1miRNAGID1TCPL1COL5HFR1EMFActinFYOsHB1aWNK4GILUXUV-DDBOsMADS3Ghd7bZIP23NF-YB1LHP113067, 1521311491, 64, 153985931, 1254, 13113177105131131215084, 85, 12590, 99491041311434, 13113129, 8410385, 12585, 12385, 8985851254, 13185, 12569854, 8513156, 7412513144685851314, 13166OsMADS1577, 1254, 13115, 16, 108, 150Hd3aFD1GF14cLDSDHd3a21, 38, 110, 125ZTLa4, 131GI85, 125CIRCADIAN CLOCKNF-YB subunitNF-YB2NF-YC subunitMAF4131MAF5131PHYEPIF79975SMZSNZ131131U2AFLTPL112CRPBZR1POLE1POLA1DPNPaseMYB29 ZOS1-05FAS2SUS2SFR6PHDfLWNK8UV-DDB2WNK1DREB1GDREB1FGibberellic Acid SNF2LHd162OsMADS50Hd3aAutonomous PathwayTo be moved into pathwayDH1162MADS47MADS72MADS61BrassinosteroidSNB14LRK1POLE1ES43bES43aES43bEZ1ZOS9-03EMFZOS9-03Sugar MetabolismMYBHd2Photoperiod CKA2HD6CK2alphaCpWNK8aWNK8b


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  108. Wang X, Zhang Y, Ma Q, Zhang Z, Xue Y, Bao S, Chong K; ''SKB1-mediated symmetric dimethylation of histone H4R3 controls flowering time in Arabidopsis.''; EMBO J, 2007 PubMed Europe PMC Scholia
  109. Higgins JA, Bailey PC, Laurie DA; ''Comparative genomics of flowering time pathways using Brachypodium distachyon as a model for the temperate grasses.''; PLoS One, 2010 PubMed Europe PMC Scholia
  110. Tamada Y, Yun JY, Woo SC, Amasino RM; ''ARABIDOPSIS TRITHORAX-RELATED7 is required for methylation of lysine 4 of histone H3 and for transcriptional activation of FLOWERING LOCUS C.''; Plant Cell, 2009 PubMed Europe PMC Scholia
  111. Mylne JS, Barrett L, Tessadori F, Mesnage S, Johnson L, Bernatavichute YV, Jacobsen SE, Fransz P, Dean C; ''LHP1, the Arabidopsis homologue of HETEROCHROMATIN PROTEIN1, is required for epigenetic silencing of FLC.''; Proc Natl Acad Sci U S A, 2006 PubMed Europe PMC Scholia
  112. Ikeda Y, Kobayashi Y, Yamaguchi A, Abe M, Araki T; ''Molecular basis of late-flowering phenotype caused by dominant epi-alleles of the FWA locus in Arabidopsis.''; Plant Cell Physiol, 2007 PubMed Europe PMC Scholia
  113. Knight H, Thomson AJ, McWatters HG; ''''; , PubMed Europe PMC Scholia
  114. Flowers JM, Hanzawa Y, Hall MC, Moore RC, Purugganan MD; ''Population genomics of the Arabidopsis thaliana flowering time gene network.''; Mol Biol Evol, 2009 PubMed Europe PMC Scholia
  115. Magome H, Yamaguchi S, Hanada A, Kamiya Y, Oda K; ''dwarf and delayed-flowering 1, a novel Arabidopsis mutant deficient in gibberellin biosynthesis because of overexpression of a putative AP2 transcription factor.''; Plant J, 2004 PubMed Europe PMC Scholia
  116. Komiya R, Yokoi S, Shimamoto K; ''A gene network for long-day flowering activates RFT1 encoding a mobile flowering signal in rice.''; Development, 2009 PubMed Europe PMC Scholia
  117. Kumimoto RW, Zhang Y, Siefers N, Holt BF 3rd; ''NF-YC3, NF-YC4 and NF-YC9 are required for CONSTANS-mediated, photoperiod-dependent flowering in Arabidopsis thaliana.''; Plant J, 2010 PubMed Europe PMC Scholia
  118. He Y, Doyle MR, Amasino RM; ''PAF1-complex-mediated histone methylation of FLOWERING LOCUS C chromatin is required for the vernalization-responsive, winter-annual habit in Arabidopsis.''; Genes Dev, 2004 PubMed Europe PMC Scholia
  119. Yamashino T, Matsushika A, Fujimori T, Sato S, Kato T, Tabata S, Mizuno T; ''A Link between circadian-controlled bHLH factors and the APRR1/TOC1 quintet in Arabidopsis thaliana.''; Plant Cell Physiol, 2003 PubMed Europe PMC Scholia
  120. Kim SL, Lee S, Kim HJ, Nam HG, An G; ''OsMADS51 is a short-day flowering promoter that functions upstream of Ehd1, OsMADS14, and Hd3a.''; Plant Physiol, 2007 PubMed Europe PMC Scholia
  121. Chrost B, Kolukisaoglu U, Schulz B, Krupinska K; ''''; , PubMed Europe PMC Scholia
  122. Kang X, Chong J, Ni M; ''HYPERSENSITIVE TO RED AND BLUE 1, a ZZ-type zinc finger protein, regulates phytochrome B-mediated red and cryptochrome-mediated blue light responses.''; Plant Cell, 2005 PubMed Europe PMC Scholia
  123. Farinas B, Mas P; ''Histone acetylation and the circadian clock: a role for the MYB transcription factor RVE8/LCL5.''; Plant Signal Behav, 2011 PubMed Europe PMC Scholia
  124. Lu SX, Knowles SM, Andronis C, Ong MS, Tobin EM; ''CIRCADIAN CLOCK ASSOCIATED1 and LATE ELONGATED HYPOCOTYL function synergistically in the circadian clock of Arabidopsis.''; Plant Physiol, 2009 PubMed Europe PMC Scholia
  125. Mathieu J, Yant LJ, M��rdter F, K��ttner F, Schmid M; ''Repression of flowering by the miR172 target SMZ.''; PLoS Biol, 2009 PubMed Europe PMC Scholia
  126. Proveniers M, Rutjens B, Brand M, Smeekens S; ''The Arabidopsis TALE homeobox gene ATH1 controls floral competency through positive regulation of FLC.''; Plant J, 2007 PubMed Europe PMC Scholia
  127. Gawienowski MC, Szymanski D, Perera IY, Zielinski RE; ''Calmodulin isoforms in Arabidopsis encoded by multiple divergent mRNAs.''; Plant Mol Biol, 1993 PubMed Europe PMC Scholia
  128. Kandasamy MK, Deal RB, McKinney EC, Meagher RB; ''Silencing the nuclear actin-related protein AtARP4 in Arabidopsis has multiple effects on plant development, including early flowering and delayed floral senescence.''; Plant J, 2005 PubMed Europe PMC Scholia
  129. Choi K, Park C, Lee J, Oh M, Noh B, Lee I; ''Arabidopsis homologs of components of the SWR1 complex regulate flowering and plant development.''; Development, 2007 PubMed Europe PMC Scholia
  130. Itoh H, Nonoue Y, Yano M, Izawa T; ''A pair of floral regulators sets critical day length for Hd3a florigen expression in rice.''; Nat Genet, 2010 PubMed Europe PMC Scholia
  131. Chen H, Shen Y, Tang X, Yu L, Wang J, Guo L, Zhang Y, Zhang H, Feng S, Strickland E, Zheng N, Deng XW; ''Arabidopsis CULLIN4 Forms an E3 Ubiquitin Ligase with RBX1 and the CDD Complex in Mediating Light Control of Development.''; Plant Cell, 2006 PubMed Europe PMC Scholia
  132. Chanvivattana Y, Bishopp A, Schubert D, Stock C, Moon YH, Sung ZR, Goodrich J; ''Interaction of Polycomb-group proteins controlling flowering in Arabidopsis.''; Development, 2004 PubMed Europe PMC Scholia
  133. Nakamichi N, Murakami-Kojima M, Sato E, Kishi Y, Yamashino T, Mizuno T; ''Compilation and characterization of a novel WNK family of protein kinases in Arabiodpsis thaliana with reference to circadian rhythms.''; Biosci Biotechnol Biochem, 2002 PubMed Europe PMC Scholia
  134. Agarwal, P., Jha, B.; ''Transcription factors in plants and ABA dependent and independent abiotic stress signalling''; Biologia Plantarum, 2010
  135. Zhang H, Ransom C, Ludwig P, van Nocker S; ''Genetic analysis of early flowering mutants in Arabidopsis defines a class of pleiotropic developmental regulator required for expression of the flowering-time switch flowering locus C.''; Genetics, 2003 PubMed Europe PMC Scholia
  136. Sugano S, Andronis C, Green RM, Wang ZY, Tobin EM; ''Protein kinase CK2 interacts with and phosphorylates the Arabidopsis circadian clock-associated 1 protein.''; Proc Natl Acad Sci U S A, 1998 PubMed Europe PMC Scholia
  137. Fornara F, Panigrahi KC, Gissot L, Sauerbrunn N, R��hl M, Jarillo JA, Coupland G; ''Arabidopsis DOF transcription factors act redundantly to reduce CONSTANS expression and are essential for a photoperiodic flowering response.''; Dev Cell, 2009 PubMed Europe PMC Scholia
  138. Fornara F, Coupland G; ''Plant phase transitions make a SPLash.''; Cell, 2009 PubMed Europe PMC Scholia
  139. Wu JF, Wang Y, Wu SH; ''Two new clock proteins, LWD1 and LWD2, regulate Arabidopsis photoperiodic flowering.''; Plant Physiol, 2008 PubMed Europe PMC Scholia
  140. Wang K, Tang D, Hong L, Xu W, Huang J, Li M, Gu M, Xue Y, Cheng Z; ''DEP and AFO regulate reproductive habit in rice.''; PLoS Genet, 2010 PubMed Europe PMC Scholia
  141. Bommert P, Satoh-Nagasawa N, Jackson D, Hirano HY; ''Genetics and evolution of inflorescence and flower development in grasses.''; Plant Cell Physiol, 2005 PubMed Europe PMC Scholia
  142. Eulgem T, Tsuchiya T, Wang XJ, Beasley B, Cuzick A, T��r M, Zhu T, McDowell JM, Holub E, Dangl JL; ''EDM2 is required for RPP7-dependent disease resistance in Arabidopsis and affects RPP7 transcript levels.''; Plant J, 2007 PubMed Europe PMC Scholia
  143. Li H, Liang W, Jia R, Yin C, Zong J, Kong H, Zhang D; ''The AGL6-like gene OsMADS6 regulates floral organ and meristem identities in rice.''; Cell Res, 2010 PubMed Europe PMC Scholia
  144. Herr AJ, Moln��r A, Jones A, Baulcombe DC; ''Defective RNA processing enhances RNA silencing and influences flowering of Arabidopsis.''; Proc Natl Acad Sci U S A, 2006 PubMed Europe PMC Scholia
  145. Yamaguchi A, Wu MF, Yang L, Wu G, Poethig RS, Wagner D; ''The microRNA-regulated SBP-Box transcription factor SPL3 is a direct upstream activator of LEAFY, FRUITFULL, and APETALA1.''; Dev Cell, 2009 PubMed Europe PMC Scholia
  146. Bernhardt A, Lechner E, Hano P, Schade V, Dieterle M, Anders M, Dubin MJ, Benvenuto G, Bowler C, Genschik P, Hellmann H; ''CUL4 associates with DDB1 and DET1 and its downregulation affects diverse aspects of development in Arabidopsis thaliana.''; Plant J, 2006 PubMed Europe PMC Scholia
  147. Scortecci KC, Michaels SD, Amasino RM; ''Identification of a MADS-box gene, FLOWERING LOCUS M, that represses flowering.''; Plant J, 2001 PubMed Europe PMC Scholia
  148. Ratcliffe OJ, Kumimoto RW, Wong BJ, Riechmann JL; ''Analysis of the Arabidopsis MADS AFFECTING FLOWERING gene family: MAF2 prevents vernalization by short periods of cold.''; Plant Cell, 2003 PubMed Europe PMC Scholia
  149. Ishikawa R, Aoki M, Kurotani K, Yokoi S, Shinomura T, Takano M, Shimamoto K; ''Phytochrome B regulates Heading date 1 (Hd1)-mediated expression of rice florigen Hd3a and critical day length in rice.''; Mol Genet Genomics, 2011 PubMed Europe PMC Scholia
  150. Jeon JS, Jang S, Lee S, Nam J, Kim C, Lee SH, Chung YY, Kim SR, Lee YH, Cho YG, An G; ''leafy hull sterile1 is a homeotic mutation in a rice MADS box gene affecting rice flower development.''; Plant Cell, 2000 PubMed Europe PMC Scholia
  151. Kim J, Kim Y, Yeom M, Kim JH, Nam HG; ''FIONA1 is essential for regulating period length in the Arabidopsis circadian clock.''; Plant Cell, 2008 PubMed Europe PMC Scholia
  152. Tamaki S, Matsuo S, Wong HL, Yokoi S, Shimamoto K; ''Hd3a protein is a mobile flowering signal in rice.''; Science, 2007 PubMed Europe PMC Scholia
  153. Salinas P, Fuentes D, Vidal E, Jordana X, Echeverria M, Holuigue L; ''An extensive survey of CK2 alpha and beta subunits in Arabidopsis: multiple isoforms exhibit differential subcellular localization.''; Plant Cell Physiol, 2006 PubMed Europe PMC Scholia
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  155. Higgins JA, Bailey PC, Laurie DA; ''Comparative genomics of flowering time pathways using Brachypodium distachyon as a model for the temperate grasses.''; PLoS One, 2010 PubMed Europe PMC Scholia
  156. Wang K, Tang D, Hong L, Xu W, Huang J, Li M, Gu M, Xue Y, Cheng Z; ''DEP and AFO regulate reproductive habit in rice.''; PLoS Genet, 2010 PubMed Europe PMC Scholia
  157. Knight H, Thomson AJ, McWatters HG; ''Sensitive to freezing6 integrates cellular and environmental inputs to the plant circadian clock.''; Plant Physiol, 2008 PubMed Europe PMC Scholia
  158. Higgins JA, Bailey PC, Laurie DA; ''Comparative genomics of flowering time pathways using Brachypodium distachyon as a model for the temperate grasses.''; PLoS One, 2010 PubMed Europe PMC Scholia
  159. Xing D, Zhao H, Xu R, Li QQ; ''Arabidopsis PCFS4, a homologue of yeast polyadenylation factor Pcf11p, regulates FCA alternative processing and promotes flowering time.''; Plant J, 2008 PubMed Europe PMC Scholia
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  163. Scortecci KC, Michaels SD, Amasino RM; ''Identification of a MADS-box gene, FLOWERING LOCUS M, that represses flowering.''; Plant J, 2001 PubMed Europe PMC Scholia
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History

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120355view22:08, 27 November 2021EgonwReverted to version '19:41, 27 November 2021' by Egonw
120354view21:42, 27 November 2021EgonwReplaced "a bridge" with "a link"
120353view21:07, 27 November 2021EgonwRetyped the problematic line
120352view21:03, 27 November 2021EgonwStill debugging
120351view20:56, 27 November 2021EgonwTrying to find the problematic character
120350view20:38, 27 November 2021EgonwRemove newlines
120349view19:41, 27 November 2021EgonwTypo fix
117417view10:43, 21 May 2021EweitzModified title
110980view14:38, 25 June 2020L DupuisConnected lines
87501view01:46, 25 July 2016AlexanderPicoOntology Term : 'signaling pathway' added !
85054view10:44, 10 April 2016EgonwReplaced a Wikipedia ID with a ChEBI ID.
78366view10:07, 7 January 2015MaintBotadded missing graphIds
74454view17:58, 21 April 2014MaintBotfixed width and height on unrotated shapes
74453view17:55, 21 April 2014MaintBotremoved inconsistent rotation of labeled shapes
74452view17:50, 21 April 2014MaintBotremoved extra line feed characters from label and ID fields
74436view06:34, 20 April 2014EgonwUniform PubMed IDs: only numbers.
72182view23:15, 25 October 2013AlexanderPicoAdded missing xrefs and a lit ref
72074view18:40, 24 October 2013KhanspersUpdated data sources
72073view18:32, 24 October 2013Khanspersfixed empty data sources
72072view18:25, 24 October 2013KhanspersPeriodical save, work in progress
71967view00:08, 24 October 2013MaintBotremoved data source from nodes without identifier
70136view20:53, 12 July 2013MaintBotupdated to 2013 schema
68780view21:51, 7 July 2013EgonwFixed a data source.
58407view22:14, 12 February 2013MaintBotModified categories
47686view23:55, 2 April 2012MamathaNew pathway

External references

DataNodes

View all...
NameTypeDatabase referenceComment
?GeneProductNo FLC ortholog. FLC/MAF group of MADS box genes likely evolved after dicot/monocot divergence.
ABH1GeneProductLOC_Os03g22570 (Rice Ensembl Gene) Retrieved through Gramene (August 25, 2010)
AGL9GeneProduct4325533 (Entrez Gene)
AP2GeneProductLOC_Os04g55560 (Rice Ensembl Gene)
ARP6GeneProductLOC_Os01g16414 (Rice Ensembl Gene) Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene/NCBI (August 25, 2010)
ATL6lGeneProductLOC_Os09g29310 (Rice Ensembl Gene) Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene (August 25, 2010)
ATX-1GeneProductLOC_Os09g04890 (Rice Ensembl Gene) Retrieved through Gramene (August 25, 2010)
Actin GeneProductLOC_Os08g04280 (Rice Ensembl Gene)
BZR1 GeneProductLOC_Os07g39220 (Rice Ensembl Gene)
CDC73GeneProductLOC_Os03g46190 (Rice Ensembl Gene) Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene/NCBI (August 25, 2010)
CDF2aGeneProductLOC_Os01g15900 (Rice Ensembl Gene) Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene/NCBI (August 25, 2010)
CDF3GeneProductLOC_Os07g48570 (Rice Ensembl Gene) Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene (August 25, 2010)
CDF5GeneProductLOC_Os01g15900 (Rice Ensembl Gene) Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene (August 25, 2010)
CK2alphaCpGeneProductLOC_Os03g55490 (Rice Ensembl Gene)
  • Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene (August 25, 2010)
  • LOC_Os07g02350 is the ID that InParanoid retrieved, but homology was already done in the lab
CKA1GeneProductLOC_Os03g55389 (Rice Ensembl Gene)
  • Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene (August 25, 2010)
  • LOC_Os07g02350 is the ID that InParanoid retrieved, but homology was already done in the lab
CKA2GeneProductLOC_Os03g10940 (Rice Ensembl Gene)
  • Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene (August 25, 2010)
  • LOC_Os07g02350 is the ID that InParanoid retrieved, but homology was already done in the lab
CKB1GeneProductLOC_Os10g41520 (Rice Ensembl Gene)
  • Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene (August 25, 2010)
  • See Flowering Time Orthos Clean-25mar10 (Sheet4)
CKB4GeneProductLOC_Os07g31280 (Rice Ensembl Gene) Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene (August 25, 2010)
COL5GeneProductLOC_Os04g42020 (Rice Ensembl Gene) Retrieved through Gramene (August 25, 2010)
COL9aGeneProductLOC_Os06g19444 (Rice Ensembl Gene) Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene/RAPDB (August 25, 2010)
COP1GeneProductLOC_Os02g53140 (Rice Ensembl Gene) Retrieved through Gramene (August 25, 2010)
CPS1GeneProductLOC_Os02g17780 (Rice Ensembl Gene)
CRP GeneProductLOC_Os07g45400 (Rice Ensembl Gene) Symbol assigned by Mamatha Hanumappa, 16-Nov-2011
CRY2GeneProductLOC_Os02g41550 (Rice Ensembl Gene) Retrieved through Gramene (August 25, 2010)
CSD2GeneProductLOC_Os08g44770 (Rice Ensembl Gene) Retrieved through Gramene (August 25, 2010)
CUL4BGeneProductLOC_Os03g57290 (Rice Ensembl Gene) Retrieved with Gramene (August 25, 2010)
DCAF1GeneProductLOC_Os04g59460 (Rice Ensembl Gene) Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene/NCBI (August 25, 2010)
DET1GeneProductLOC_Os01g01484 (Rice Ensembl Gene)
DH1GeneProduct
  • Retrieved through NCBI (August 25, 2010); Could not find identifier, but found lit reference (see associated bibliography recored)
  • Type your comment here
DI19-2GeneProductLOC_Os05g28980 (Rice Ensembl Gene)
  • Retrieved through Gramene/NCBI
  • HRB1 represents a signaling step that regulates FLOWERING LOCUS T (FT) expression downstream of red and blue light perception.
DPBF3GeneProductLOC_Os01g59760 (Rice Ensembl Gene) Retrieved through Gramene/NCBI
DPNPase GeneProductLOC_Os12g08280 (Rice Ensembl Gene)
DREB1F


GeneProductLOC_Os01g73770 (Rice Ensembl Gene)
DREB1G


GeneProductLOC_Os02g45450 (Rice Ensembl Gene)
Dof12GeneProductLOC_Os02g47810 (Rice Ensembl Gene)
EDM2GeneProductLOC_Os08g24946 (Rice Ensembl Gene) Retrieved with Gramene (August 25, 2010)
EFSGeneProductLOC_Os02g34850 (Rice Ensembl Gene) Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene/NCBI (August 25, 2010)
ELF3aGeneProductLOC_Os06g05060 (Rice Ensembl Gene) Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene/NCBI (August 25, 2010)
ELF3bGeneProductLOC_Os01g38530 (Rice Ensembl Gene) Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene/NCBI (August 25, 2010)
ELF4GeneProductLOC_Os11g40610 (Rice Ensembl Gene) BLAST AtELF4 (AT2G40080) confirm on Gramene, assigned by Mamatha Hanumappa
ELF5GeneProductLOC_Os07g09510 (Rice Ensembl Gene) Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene (August 25, 2010)
ELF7GeneProductLOC_Os08g06070 (Rice Ensembl Gene) Retrieved through Gramene (August 25, 2010)
ELF8GeneProductLOC_Os07g29360 (Rice Ensembl Gene) Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene (August 25, 2010)
ELF9GeneProductLOC_Os04g41910 (Rice Ensembl Gene) Gene ID assigned by Mamatha Hanumappan (August 25, 2010)
EMFGeneProductLOC_Os04g08034 (Rice Ensembl Gene) Retrieved through Gramene (August 25, 2010)
ES43aGeneProductLOC_Os09g21770 (Rice Ensembl Gene) Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene (August 25, 2010)
ES43bGeneProductLOC_Os08g32620 (Rice Ensembl Gene)
  • Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene (August 25, 2010). Paralog of JMJ704.
  • Due to high homology with PKDM7B, may also be involved with downregulation of FT/TSF
ESD4aGeneProductLOC_Os01g25370 (Rice Ensembl Gene) Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene/NCBI (August 25, 2010)
ESP4GeneProductLOC_Os07g49320 (Rice Ensembl Gene) Retrieved through Gramene (August 25, 2010)
EZ1GeneProductLOC_Os06g16390 (Rice Ensembl Gene) Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene (August 25, 2010)
EZ3GeneProductLOC_Os03g19480 (Rice Ensembl Gene) Gene ID assigned by NCBI, cross-checked with Gramene (August 25, 2010)
Ehd1GeneProductLOC_Os10g32600 (Rice Ensembl Gene)
  • Retrieved through NCBI (August 25, 2010)
  • Induces Hd3a under SD
FAS2 GeneProductLOC_Os08g01680 (Rice Ensembl Gene)
FBO10GeneProductLOC_Os11g34460 (Rice Ensembl Gene) Retrieved through Gramene (August 25, 2010)
FBX77GeneProductLOC_Os03g10040 (Rice Ensembl Gene) Retrieved with Gramene (August 25, 2010)
FCAGeneProductLOC_Os09g03610 (Rice Ensembl Gene) Retrieved with Gramene (August 25, 2010)
FD1GeneProductLOC_Os09g36910 (Rice Ensembl Gene)
  • Binds to promoter of MADS15 to activate transcription.
FIEGeneProductLOC_Os08g04270 (Rice Ensembl Gene) Retrieved with Gramene (August 25, 2010)
FIO1GeneProductLOC_Os02g02880 (Rice Ensembl Gene) Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene (August 25, 2010)
FLCGeneProductAT5G10140 (TAIR) Retrieved through NCBI/Gramene (August 25, 2010)
FLKGeneProductLOC_Os12g40560 (Rice Ensembl Gene) Retrieved through Gramene (August 25, 2010)
FLGeneProductLOC_Os04g51000 (Rice Ensembl Gene) Retrieved with Gramene (August 25, 2010)
FLOWERINGPathway
FLXGeneProductLOC_Os07g32450 (Rice Ensembl Gene)
  • Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene (August 25, 2010)
  • hits SIP30 in indica
FPAGeneProductLOC_Os09g34070 (Rice Ensembl Gene) Gene ID assigned by Mamatha Hanumappa (August 25, 2010)
FPF1GeneProductLOC_Os01g70730 (Rice Ensembl Gene) Retrieved with Gramene (August 25, 2010)
FRIGeneProductRetrieved with Gramene (August 25, 2010)
FRL1GeneProductLOC_Os03g09310 (Rice Ensembl Gene)
  • Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene/NCBI (August 25, 2010)
  • LOC_Os09g07380 Frigida (closest ortholog)
FRL2GeneProductLOC_Os03g09310 (Rice Ensembl Gene) Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene/NCBI (August 25, 2010)
FTL1GeneProductLOC_Os01g11940 (Rice Ensembl Gene) Retrieved through Gramene (August 25, 2010). Paralog of Hd3a. InParanoid retrieves Hd3a, RFT1 and FTL1 as orthologs of Arabidopsis FT (At1G65480) and TSF (AT4G20370). Hd3a is the ortholog of FT.
FUS9ProteinB9FUS9 (Uniprot-TrEMBL)
FVEGeneProductLOC_Os01g51300 (Rice Ensembl Gene) Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene (August 25, 2010)
FYGeneProductLOC_Os01g72220 (Rice Ensembl Gene) Retrieved with Gramene (August 25, 2010)
FYPP3GeneProductLOC_Os01g49690 (Rice Ensembl Gene) Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene (August 25, 2010)
GAMetaboliteGibberellic Acid (Wikipedia) GA1 catalyzes conversion of geranylgeranyl pyrophosphate (GGPP) to copalyl pyrophosphate (CPP) in gibberellin biosynthesis.
GAMybGeneProductLOC_Os01g59660 (Rice Ensembl Gene) Retrieved with Gramene (August 25, 2010)
GF14bGeneProductLOC_Os04g38870 (Rice Ensembl Gene) Retrieved through Gramene/NCBI/Phytozome (August 25, 2010)
GF14cGeneProductLOC_Os08g33370 (Rice Ensembl Gene)
  • Bridges Hd3a and FD1.
GF14cGeneProductLOC_Os08g33370 (Rice Ensembl Gene) Retrieved through Gramene/NCBI/Phytozome (August 25, 2010)
GF14eGeneProductLOC_Os02g36974 (Rice Ensembl Gene) Retrieved through Gramene/NCBI/Phytozome (August 25, 2010)
GID1GeneProductLOC_Os05g33730 (Rice Ensembl Gene)
  • AFFINITY TO GA4; ASSOCIATED WITH GID1B AND C WHICH ARE FUNCTIONALLY REDUNDANT
  • Retrieved through Gramene (August 25, 2010)
GIGeneProductLOC_Os01g08700 (Rice Ensembl Gene)
  • Required for induction of Ehd1 and Hd3a, but not thru Se5 and Ghd7 repression
  • Retrieved through NCBI (August 25, 2010)
Gal1GeneProductLOC_Os10g35110 (Rice Ensembl Gene)
Ghd7GeneProductLOC_Os06g06750 (Rice Ensembl Gene)
HAP3DGeneProductLOC_Os01g70890 (Rice Ensembl Gene) Retrieved through Gramene (August 25, 2010)
HAP3FGeneProductLOC_Os07g41580 (Rice Ensembl Gene) Retrieved through Gramene (August 25, 2010)
HAP3IGeneProductLOC_Os03g29970 (Rice Ensembl Gene) Retrieved through Gramene (August 25, 2010)
HD6GeneProductLOC_Os07g02350 (Rice Ensembl Gene)
  • Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene (August 25, 2010)
  • LOC_Os07g02350 is the ID that InParanoid retrieved, but homology was already done in the lab
HFR1GeneProductLOC_Os05g04740 (Rice Ensembl Gene) Retrieved through Gramene (August 25, 2010)
HOS1GeneProductLOC_Os03g52700 (Rice Ensembl Gene) Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene (August 25, 2010)
Hd1GeneProductLOC_Os06g16370 (Rice Ensembl Gene)
Hd1GeneProductLOC_Os06g16370 (Rice Ensembl Gene) Ortholog of Arabidopsis thaliana CO.
Hd2GeneProductLOC_Os07g49460 (Rice Ensembl Gene)
  • Alternate Gene_ID: Hd2
  • Retrieved through NCBI
Hd3aGeneProductLOC_Os06g06320 (Rice Ensembl Gene)
Hd3aGeneProductLOC_Os06g06320 (Rice Ensembl Gene) Ortholog of Arabidopsis thaliana FT. Paralogs FTL1 and RFT1 orthologs of AtTSF.
ID1GeneProductLOC_Os10g28330 (Gramene Rice)
JARID1CGeneProductLOC_Os03g05680 (Rice Ensembl Gene) Retrieved through Gramene/NCBI (August 25, 2010)
JMJ703GeneProductLOC_Os05g10770 (Rice Ensembl Gene)
  • Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene (August 25, 2010). Paralog of JMJ704.
  • Due to high homology with PKDM7B, may also be involved with downregulation of FT/TSF
JMJ704GeneProductLOC_Os05g23670 (Rice Ensembl Gene) Retrieved with Gramene (August 25, 2010)
JMJ706GeneProductLOC_Os10g42690 (Rice Ensembl Gene) Retrieved through NCBI (August 25, 2010)
LDL3GeneProductLOC_Os04g47270 (Rice Ensembl Gene) Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene/NCBI (August 25, 2010)
LEC1AGeneProductLOC_Os06g17480 (Rice Ensembl Gene) Retrieved through Gramene/NCBI (August 25, 2010)
LEC1BGeneProductLOC_Os02g49370 (Rice Ensembl Gene) Retrieved through Gramene (August 25, 2010)
LFL1GeneProductLOC_Os01g56610 (Rice Ensembl Gene) Represses Ehd1 in LD
LHP1GeneProductLOC_Os10g17770 (Rice Ensembl Gene) Retrieved through Gramene (August 25, 2010)
LHYGeneProductLOC_Os08g06110 (Rice Ensembl Gene) Alternate Gene_ID: OsCCA1
LKP2GeneProductLOC_Os02g05700 (Rice Ensembl Gene) This is FBO8/ LOC_Os02g05700. Ortholog of At2G18915, LKP2 (77.4% Protein Similarity)(Gramene/NCBI); ZTL2 (PMID: 17132630);ZTLb (PMID: 20419097); LKP2 (mamatha-see ZTLb)
LRK1 GeneProductLOC_Os08g03240 (Rice Ensembl Gene)
LTPL112 GeneProductLOC_Os02g44310 (Rice Ensembl Gene)
LUXGeneProductLOC_Os01g74020 (Rice Ensembl Gene) Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene (August 25, 2010)
LUXGeneProductLOC_Os01g74020 (Rice Ensembl Gene) Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene/NCBI (August 25, 2010)
LWDGeneProductLOC_Os02g32430 (Rice Ensembl Gene) Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene (August 25, 2010)
MADS18GeneProductLOC_Os07g41370 (Rice Ensembl Gene) Retrieved through Gramene (August 25, 2010)
MADS47GeneProductLOC_Os03g08754 (Rice Ensembl Gene) Retrieved through NCBI (August 25, 2010)
MADS61 GeneProductLOC_Os04g38770 (Rice Ensembl Gene)
MADS72 GeneProductLOC_Os03g14850 (Rice Ensembl Gene)
MAF1 GeneProductAT1G77080 (TAIR) Retrieved through Gramene (August 25, 2010)
MAF2 GeneProductAT5G65050 (TAIR)
MAF3 GeneProductAT5G65060 (TAIR) Retrieved through Gramene/NCBI (August 25, 2010)
MAF4 GeneProductAT5G65070 (TAIR) Retrieved through Gramene/NCBI (August 25, 2010)
MAF5 GeneProductAT5G65080 (TAIR) Retrieved through Gramene/NCBI (August 25, 2010); Annotated with Arabidopsis ortholog; Not found in Oryza
MSI1GeneProductLOC_Os03g43890 (Rice Ensembl Gene) Retrieved with Gramene (August 25, 2010)
MYB GeneProductLOC_Os08g43550 (Rice Ensembl Gene) Possible Arabidopsis WER ortholog
MYB29 GeneProductLOC_Os06g01670 (Rice Ensembl Gene)
NDPK2GeneProductLOC_Os12g36194 (Rice Ensembl Gene)
  • INTERACTS WITH PRMT5 TO PROMOTE VEGETATIVE GROWTH
  • Retrieved through NCBI/Gramene
NF-YA10aGeneProductLOC_Os03g44540 (Rice Ensembl Gene) Symbol assigned by Mamatha Hanumappa, cross-checked with Gramene/NCBI/Phytozome (August 25, 2010)
NF-YA10bGeneProductLOC_Os07g06470 (Rice Ensembl Gene) Symbol assigned by Mamatha Hanumappa, cross-checked with Gramene/NCBI/Phytozome (August 25, 2010)
NF-YA1GeneProductLOC_Os03g48970 (Rice Ensembl Gene) Symbol assigned by Mamatha Hanumappa, cross-checked with Gramene/NCBI/Phytozome (August 25, 2010)
NF-YA2GeneProductLOC_Os12g42400 (Rice Ensembl Gene) Symbol assigned by Mamatha Hanumappa, cross-checked with Gramene/NCBI/Phytozome (August 25, 2010)
NF-YA3GeneProductLOC_Os07g41720 (Rice Ensembl Gene) Symbol assigned by Mamatha Hanumappa, cross-checked with Gramene/NCBI/Phytozome (August 25, 2010)
NF-YA4 GeneProductLOC_Os12g41880 (Rice Ensembl Gene) Symbol assigned by Mamatha Hanumappa, cross-checked with Gramene/NCBI/Phytozome (August 25, 2010)
NF-YA5GeneProductLOC_Os02g53620 (Rice Ensembl Gene) Symbol assigned by Mamatha Hanumappa, cross-checked with Gramene/NCBI/Phytozome (August 25, 2010)
NF-YA6GeneProductLOC_Os03g07880 (Rice Ensembl Gene) Symbol assigned by Mamatha Hanumappa, cross-checked with Gramene/NCBI/Phytozome (August 25, 2010)
NF-YA8GeneProductLOC_Os03g29760 (Rice Ensembl Gene)
NF-YB1GeneProductLOC_Os02g49410 (Rice Ensembl Gene) Retrieved through NCBI /Gramene/Phytozome (August 25, 2010)
NF-YB11GeneProductLOC_Os09g39490 (Rice Ensembl Gene) Symbol assigned by Mamatha Hanumappa, cross-checked with Gramene/NCBI (August 25, 2010)
NF-YB13GeneProductLOC_Os08g29500 (Rice Ensembl Gene)
  • Symbol assigned by Mamatha Hanumappa, cross-checked with Gramene (August 25, 2010)
  • Closest to B13
NF-YB2GeneProductLOC_Os01g61810 (Rice Ensembl Gene) Retrieved through Gramene (August 25, 2010)
NF-YB3 GeneProductLOC_Os05g49780 (Rice Ensembl Gene)
  • OsNF-YB1 is not the exact ortholog of AtNF-YB1
  • Retrieved through Gramene (August 25, 2010)
NF-YB4GeneProductLOC_Os05g38820 (Rice Ensembl Gene) Retrieved through Gramene (August 25, 2010)
NF-YC10GeneProductLOC_Os03g63530 (Rice Ensembl Gene) Symbol assigned by Mamatha Hanumappa, cross-checked with Gramene/NCBI (August 25, 2010)
NF-YC11GeneProductLOC_Os05g41450 (Rice Ensembl Gene) Symbol assigned by Mamatha Hanumappa, cross-checked with Gramene (August 25, 2010)
NF-YC13GeneProductLOC_Os01g08790 (Rice Ensembl Gene) Symbol assigned by Mamatha Hanumappa, cross-checked with Gramene (August 25, 2010)
NF-YC1GeneProductLOC_Os03g14669 (Rice Ensembl Gene) Symbol assigned by Mamatha Hanumappa, cross-checked with Gramene/NCBI (August 25, 2010)
NF-YC2GeneProductLOC_Os02g07450 (Rice Ensembl Gene) Symbol assigned by Mamatha Hanumappa, cross-checked with Gramene/NCBI (August 25, 2010)
NF-YC2aGeneProductLOC_Os06g45640 (Rice Ensembl Gene) Symbol assigned by Mamatha Hanumappa, cross-checked with Gramene/NCBI (August 25, 2010)
NF-YC8GeneProductLOC_Os09g30310 (Rice Ensembl Gene) Symbol assigned by Mamatha Hanumappa, cross-checked with Gramene/NCBI (August 25, 2010)
OSE2GeneProductLOC_Os01g64730 (Rice Ensembl Gene) Retrieved through the Gramene (August 25, 2010)
OsABF2GeneProductLOC_Os06g10880 (Rice Ensembl Gene) Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene (August 25, 2010)
OsAREB3GeneProductLOC_Os05g41070 (Rice Ensembl Gene) Retrieved through Gramene (August 25, 2010)
OsCDF1GeneProductLOC_Os03g07360 (Rice Ensembl Gene) Retrieved through Gramene (August 25, 2010)
OsCO3GeneProductLOC_Os09g06464 (Rice Ensembl Gene) Retrieved through NCBI (August 25, 2010)
OsCRY1bGeneProductLOC_Os04g37920 (Rice Ensembl Gene) Retrieved through Gramene (August 25, 2010)
OsCam2GeneProductLOC_Os05g41210 (Rice Ensembl Gene)
OsHB1aGeneProductLOC_Os02g13310 (Rice Ensembl Gene) Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene (August 25, 2010)
OsHUA2GeneProductLOC_Os08g01054 (Rice Ensembl Gene)
OsLDGeneProductLOC_Os01g70810 (Rice Ensembl Gene) Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene (August 25, 2010)
OsMADS14GeneProductLOC_Os03g54160 (Rice Ensembl Gene) Retrieved through Gramene
OsMADS15GeneProductLOC_Os07g01820 (Rice Ensembl Gene) Retrieved through Gramene
OsMADS1GeneProductLOC_Os03g11614 (Rice Ensembl Gene)
OsMADS22GeneProductLOC_Os02g52340 (Rice Ensembl Gene) Retrieved through NCBI/Gramene
OsMADS27GeneProductLOC_Os02g36924 (Rice Ensembl Gene)
  • Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene/NCBI (August 25, 2010)
  • Specifies floral state by determining floral organ and meristem identities, with OsMADS1and OsMADS17. Mutants have retarded establishement of floral identity,have mosaic floral organs and palea acqures lemma identity
OsMADS29GeneProductLOC_Os02g07430 (Rice Ensembl Gene)
OsMADS31GeneProductLOC_Os04g52410 (Rice Ensembl Gene) Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene/NCBI (August 25, 2010)
OsMADS3GeneProductLOC_Os01g10504 (Rice Ensembl Gene)
OsMADS50 GeneProductLOC_Os03g03070 (Rice Ensembl Gene)
OsMADS50GeneProductLOC_Os10g39130 (Rice Ensembl Gene) OsSOC1
OsMADS51GeneProductLOC_Os01g69850 (Rice Ensembl Gene) Retrieved through NCBI (August 25, 2010)
OsMADS56GeneProductLOC_Os10g39130 (Rice Ensembl Gene) Retrieved through Gramene (August 25, 2010)
OsMADS5GeneProductLOC_Os06g06750 (Rice Ensembl Gene)
OsMADS6GeneProductLOC_OS02G45770.1 (Rice Ensembl Gene) Retrieved through NCBI/Gramene (August 25, 2010)
OsMADS7GeneProductLOC_Os08g41950 (Rice Ensembl Gene)
OsMADS8GeneProductLOC_Os09g32948 (Rice Ensembl Gene)
OsMFT1 GeneProductLOC_Os06g30370 (Rice Ensembl Gene) Retrieved through Gramene
OsPEPGeneProductLOC_Os10g41440 (Rice Ensembl Gene) Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene (August 25, 2010)
OsPRP3GeneProductLOC_Os09g07500 (Rice Ensembl Gene)
OsSPL14GeneProductLOC_Os08g39890 (Rice Ensembl Gene) Retrieved through Gramene (August 25, 2010)
OsbZIP10GeneProductLOC_Os01g64000 (Rice Ensembl Gene) Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene (August 25, 2010)
PAF1GeneProductLOC_Os02g04100 (Rice Ensembl Gene) Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene (August 25, 2010)
PCFS4GeneProductLOC_Os08g08830 (Rice Ensembl Gene) Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene (August 25, 2010)
PFT1GeneProductLOC_Os09g13610 (Rice Ensembl Gene) Retrieved through Gramene/RAD-UCDavis (August 25, 2010)
PHDfL GeneProductLOC_Os02g09920 (Rice Ensembl Gene) Symbol assigned by Mamatha Hanumappa, 16-Nov-2011
PHYAGeneProductLOC_Os03g51030 (Rice Ensembl Gene) Retrieved through Gramene (August 25, 2010)
PHYB/PHYDGeneProductLOC_Os03g19590 (Rice Ensembl Gene) Retrieved through Gramene
PHYBGeneProductLOC_Os03g19590 (Rice Ensembl Gene) Retrieved through Gramene
PHYCGeneProductLOC_Os03g54084 (Rice Ensembl Gene) Retrieved with Gramene (August 25, 2010)
PHYE GeneProductAT4G18130 (TAIR) Retrieved through NCBI/Gramene (August 25, 2010)
PIE1GeneProductAT3G12810 (TAIR) This denotes the SWR1 complex consisting of PIE1,SEF1 and ARP6; Annotated with Arabidopsis ortholog; osPIE1 identification was retracted in 2011
PIE1GeneProductLOC_Os02g46450 (Rice Ensembl Gene) Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene (August 25, 2010)
PIF7 GeneProductAT5G61270 (TAIR) Retrieved through Gramene/NCBI (August 25, 2010)
PIN1OSGeneProductLOC_Os04g56800 (Rice Ensembl Gene) Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene/NCBI/Phytozome (August 25, 2010)
POLA1 GeneProductLOC_Os01g64820 (Rice Ensembl Gene)
POLE1 GeneProductLOC_Os02g30800 (Rice Ensembl Gene)
PPR73GeneProductLOC_Os03g17570 (Rice Ensembl Gene) Retrieved through Gramene and NCBI (August 25, 2010)
PRMT5GeneProductLOC_Os02g04660 (Rice Ensembl Gene)
  • SKB1;Represses FLC by H4R3sme2 histone demethylation of promoter
  • Retrieved from Gramene (August 25, 2010)
PRR59GeneProductLOC_Os11g05930 (Rice Ensembl Gene)
RAV1-like1GeneProductLOC_Os05g47650 (Rice Ensembl Gene) Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene/NCBI (August 25, 2010)
RBX1GeneProductLOC_Os01g01700 (Rice Ensembl Gene) Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene (August 25, 2010)
RCN1GeneProductLOC_Os11g05470 (Rice Ensembl Gene) Retrieved with Gramene (August 25, 2010)
RCN2GeneProductLOC_Os02g32950 (Rice Ensembl Gene) Retrieved with Gramene/NCBI (August 25, 2010)
REC14GeneProductLOC_Os11g43890 (Rice Ensembl Gene) Retrieved through Gramene (August 25, 2010)
RFT1GeneProductLOC_Os06g06300 (Rice Ensembl Gene) Paralog of Hd3a. Acts as a rice florigen under long days.
ROC5GeneProductLOC_Os02g45250 (Rice Ensembl Gene) Retrieved through Gramene (August 25, 2010)
SDG25GeneProductLOC_Os12g41900 (Rice Ensembl Gene) Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene/NCBI/Phytozome (August 25, 2010)
SDG26GeneProductLOC_Os04g34976 (Rice Ensembl Gene) Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene (August 25, 2010)
SEF1GeneProductLOC_Os03g25260 (Rice Ensembl Gene) Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene (August 25, 2010)
SFR6 GeneProductLOC_Os10g35560 (Rice Ensembl Gene) Symbol assigned by Mamatha Hanumappa, 16-Nov-2011
SINAT5GeneProductLOC_Os02g19140 (Rice Ensembl Gene)
  • Retrieved through Gramene (August 25, 2010)
  • Ubiquitinates LHY to degrade it and is inhibited by DET1 which stabilizes LHY
SLR1GeneProductLOC_Os03g49990 (Rice Ensembl Gene) Retrieved with Gramene (August 25, 2010)
SMZ GeneProductAT3G54990 (TAIR) Retrieved through Gramene/NCBI (August 25, 2010)
SNBGeneProductLOC_Os07g13170 (Rice Ensembl Gene)
SNF2LGeneProductLOC_Os02g02290 (Rice Ensembl Gene) Partially redundant with autonomous pathway; acts through photoperiod pathway to suppress the floral promoters CO, FT and SOC1 and the floral repressor FLC. Symbol assigned by Mamatha Hanumappa, 16-Nov-2011
SNZ GeneProductAT2G39250 (TAIR) Retrieved through Gramene/NCBI (August 25, 2010)
SPA1GeneProductLOC_Os05g49590 (Rice Ensembl Gene)
  • Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene/NCBI (August 25, 2010)
  • Arabi blast gives 05g
SPA2GeneProductLOC_Os01g52640 (Rice Ensembl Gene)
  • Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene/NCBI (August 25, 2010)
  • Arabi blast gives 01g
SPL13GeneProductLOC_Os07g32170 (Rice Ensembl Gene) Retrieved through Gramene/NCBI/Phytozome (August 25, 2010)
SPYGeneProductLOC_Os08g44510 (Rice Ensembl Gene) Retrieved with Gramene (August 25, 2010)
SRR1GeneProductLOC_Os05g02690 (Rice Ensembl Gene)
SRT2GeneProductLOC_Os12g07950 (Rice Ensembl Gene) Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene/Phytozome/NCBI (August 25, 2010)
SUS2 GeneProductLOC_Os06g09450 (Rice Ensembl Gene)
TCPL1GeneProductLOC_Os02g42380 (Rice Ensembl Gene) Retrieved with Gramene
TICGeneProductLOC_Os07g38360 (Rice Ensembl Gene) Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene (August 25, 2010)
TOC1GeneProductLOC_Os02g40510 (Rice Ensembl Gene)
TOE1GeneProductLOC_Os05g03040 (Rice Ensembl Gene) Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene/NCBI (August 25, 2010)
U2AF GeneProductLOC_Os05g48960 (Rice Ensembl Gene)
UV-DDB2 GeneProductLOC_Os01g04870 (Rice Ensembl Gene)
UV-DDBGeneProductLOC_Os05g51480 (Rice Ensembl Gene) Retrieved with Gramene (August 25, 2010)
VEFGeneProductLOC_Os09g13630 (Rice Ensembl Gene) Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene/NCBI (August 25, 2010)
VIL2GeneProductLOC_Os02g05840 (Rice Ensembl Gene) Retrieved through Gramene (August 25, 2010)
VIP2GeneProductLOC_Os05g06270 (Rice Ensembl Gene) Retrieved through Gramene (August 25, 2010)
VIP4aGeneProductLOC_Os12g38970 (Rice Ensembl Gene) Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene (August 25, 2010)
VRN1GeneProductLOC_Os12g40120 (Rice Ensembl Gene) Symbol assigned by Mamatha Hanumappa, cross-checked with Gramene/NCBI/Phytozome (August 25, 2010)
VRN2GeneProductLOC_Os9g13630 (Rice Ensembl Gene) Symbol assigned by Mamatha Hanumappa, cross-checked with Gramene/NCBI/Phytozome (August 25, 2010)
VRN5aGeneProductLOC_Os12g34850 (Rice Ensembl Gene) Symbol assigned by Mamatha Hanumappa, cross-checked with Gramene (August 25, 2010)
WNK1 GeneProductLOC_Os07g38530 (Rice Ensembl Gene)
WNK4GeneProductLOC_Os02g45130 (Rice Ensembl Gene) Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene/NCBI/Gramene (August 25, 2010)
WNK8 GeneProductLOC_Os12g02250 (Rice Ensembl Gene)
WNK8a GeneProductLOC_Os11g02305 (Rice Ensembl Gene) Assigned by Mamatha Hanumappa, 20-Nov-2011
WNK8b GeneProductLOC_Os11g02300 (Rice Ensembl Gene) Assigned by Mamatha Hanumappa, 20-Nov-2011
ZOS1-05 GeneProductLOC_Os01g14010 (Rice Ensembl Gene)
ZOS1-20GeneProductLOC_Os01g67970 (Rice Ensembl Gene) Retrieved through Gramene (August 25, 2010)
ZOS9-03GeneProductLOC_Os09g13630 (Rice Ensembl Gene)
  • Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene (August 25, 2010). Paralog of JMJ704.
  • Due to high homology with PKDM7B, may also be involved with downregulation of FT/TSF
ZOS9-19GeneProductLOC_Os09g38790 (Rice Ensembl Gene)
  • Alternate Gene ID: OsSUF4
  • Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene (August 25, 2010)
ZTLaGeneProductLOC_Os06g47890 (Rice Ensembl Gene)
  • Alternate Gene_ID: ZTL2
  • Retrieved through NCBI (August 25, 2010)
ZnF36GeneProductLOC_Os05g41790 (Rice Ensembl Gene)
  • Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene (August 25, 2010)
  • OsFES1 is a different gene
bZIP23GeneProductLOC_Os02g52780 (Rice Ensembl Gene)
bZIP72GeneProductLOC_Os09g28310 (Rice Ensembl Gene) Retrieved through Gramene/NCBI (August 25, 2010)
bhlh102GeneProductLOC_Os12g41650 (Rice Ensembl Gene) Retrieved through NCBI/Gramene
bhlh105GeneProductLOC_Os01g18290 (Rice Ensembl Gene) Retrieved through Gramene (August 25, 2010)
bhlh79GeneProductLOC_Os02g47660 (Rice Ensembl Gene) Retrieved through Gramene (August 25, 2010)
miRNAGeneProduct

Annotated Interactions

No annotated interactions

Retrieved from "https://classic.wikipathways.org/index.php/Pathway:WP2178"
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