Glycolysis (Arabidopsis thaliana)

From WikiPathways

Description

Quality Tags

Ontology Terms

Bibliography

1. Lincoln Taiz, Eduardo Zeiger; ''Plant Physiology''; Sinauer Associates, third edition, 2002
2. Karve A, Rauh BL, Xia X, Kandasamy M, Meagher RB, Sheen J, Moore BD; ''Expression and evolutionary features of the hexokinase gene family in Arabidopsis.''; Planta, 2008 PubMed Europe PMC Scholia
3. Karve A, Rauh BL, Xia X, Kandasamy M, Meagher RB, Sheen J, Moore BD; ''Expression and evolutionary features of the hexokinase gene family in Arabidopsis.''; Planta, 2008 PubMed Europe PMC Scholia

History

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Compare	Revision	Action	Time	User	Comment
	125286	view	16:41, 31 January 2023	Larsgw	Add ISBN to reference
	115459	view	08:16, 21 February 2021	Egonw	Made four pathways clickable
	105900	view	11:36, 16 August 2019	Mkutmon	HMDB identifier normalization
	78381	view	10:22, 7 January 2015	MaintBot	added missing graphIds
	76229	view	12:05, 19 June 2014	Sbohler	All protein noder are now annotated with UNIPROT IDs. Information about protein isoforms was added. Subcellular location of hexokinase 2 was verified by litterature, since the information is stated wrongly in UNIPROT.
	75324	view	13:31, 19 May 2014	Sbohler	Added cell border, added RNAs for GAPC1, GAPC2, NADP-ME 1, 2 and 3.
	73929	view	11:13, 4 March 2014	Anwesha	Modified description
	73928	view	11:08, 4 March 2014	Sbohler	Modified description
	73927	view	11:05, 4 March 2014	Anwesha	Added metabolite identifiers
	73926	view	11:03, 4 March 2014	Anwesha	Added metabolite identifiers
	73925	view	10:58, 4 March 2014	Anwesha	Added pathway identifiers
	73878	view	21:50, 26 February 2014	MaintBot	Ontology Term : 'glycolysis pathway' added !
	73680	view	08:28, 15 February 2014	Egonw	Added a bunch of missing metabolite identifiers.
	73621	view	11:19, 6 February 2014	Sbohler	Periodical save, work in progress
	73620	view	10:54, 6 February 2014	Sbohler	Added organelle labels
	73605	view	13:22, 4 February 2014	Anwesha	New pathway

External references

DataNodes

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Name	Type	Database reference	Comment
ADP	Metabolite
ATP-dependent phosphofructokinase	Protein	2.7.1.11 (Enzyme Nomenclature)
ATP	Metabolite	HMDB00538 (HMDB)
Calvin Cycle	Pathway
Cysteine and Methionine Biosynthesis	Pathway
Dihydroxyacetone phosphate	Metabolite	HMDB01473 (HMDB)
H2O	Metabolite	HMDB02111 (HMDB)
HCO3-	Metabolite
Lysine Biosynthesis	Pathway
NAD+	Metabolite	HMDB00902 (HMDB)
NADH	Metabolite	HMDB01487 (HMDB)
NADP+	Metabolite	HMDB00217 (HMDB)
NADPH	Metabolite	HMDB00221 (HMDB)
PPi	Metabolite
PPi-dependent phosphofructokinase	Protein	2.7.1.90 (Enzyme Nomenclature)
Pi	Metabolite
Starch Metabolism	Pathway
Sucrose Metabolism	Pathway
TCA Cycle (Krebs Cycle)	Pathway
Valine and Isoleucine Biosynthesis	Pathway
fructose 1,6-bisphosphate aldolase	Protein	4.1.2.13 (Enzyme Nomenclature)
fructose 1,6-bisphosphate	Metabolite	HMDB01058 (HMDB)
fructose 6-phosphate	Metabolite	HMDB00124 (HMDB)
glucose 6-phosphate	Metabolite	HMDB01401 (HMDB)
glucose-6-phosphate isomerase	Protein	5.3.1.9 (Enzyme Nomenclature)
glucose	Metabolite	HMDB00122 (HMDB)
glyceraldahyde-3-phosphate	Metabolite
glyceraldehyde 3-phosphate dehydrogenase	Protein	1.2.1.12 (Enzyme Nomenclature)
glycerate 1,3-bisphosphate	Metabolite
glycerate 2-phosphate	Metabolite
glycerate 3-phosphate	Metabolite
hexokinase	Protein	2.7.1.1 (Enzyme Nomenclature)
malate	Metabolite
malate dehydrogenase	Protein	1.1.1.37 (Enzyme Nomenclature)
malic enzyme	Protein	Q9LYG3 (Uniprot-TrEMBL)
oxaloacetate	Metabolite
phosphoenolpyruvate	Metabolite
phosphoenolpyruvate carboxylase	Protein	4.1.1.31 (Enzyme Nomenclature)
phosphoglycerate kinase	Protein	2.7.2.3 (Enzyme Nomenclature)
phosphoglycerate mutase	Protein	5.4.2.1 (Enzyme Nomenclature)
phosphopyruvate hydratase	Protein	4.2.1.11 (Enzyme Nomenclature)
pyruvate	Metabolite
pyruvate kinase	Protein	2.7.1.40 (Enzyme Nomenclature)
triose phosphate isomerase	Protein	5.3.1.1 (Enzyme Nomenclature)

Annotated Interactions

No annotated interactions