TCA cycle (Krebs cycle) (Arabidopsis thaliana)

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ArcPathVisio Brace Ellipse EndoplasmicReticulum GolgiApparatus HexagonPathVisio MimDegradation Mitochondria Octagon PentagonPathVisio Rectangle RoundedRectangle SarcoplasmicReticulum TriangleEquilateralEast TrianglePathVisio none Acetyl-CoApyruvate dehydrogenaseoxaloacetatecitrateCoAcitrate synthaseisocitrateaconitase2-oxoglutarateisocitrate dehydrogenaseSuccinyl-CoA2-oxoglutarate dehydrogenasesuccinatesuccinyl-CoA synthetasefumarateFAD+FADH2succinate dehydrogenasefumarasemalate dehydrogenasemalic enzymeGlycolysispyruvateCoACO2NAD+NADHNAD+NADHCoACO2NAD+NADHCoAH2OATPADPmalateH2ONAD+NADHNAD+NADHisocitrateisocitrate dehydrogenase2-oxoglutarateNADP+NADPHCO2CO2Glutamate BiosynthesisMitochondrionCO2Name: TCA Cycle (Krebs Cycle)Organism: Arabidopsis thaliana


Description

No description

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Quality Tags

Image:NeedsRef.pngAdd references
Image:Featured.pngReview changes for Featured
Image:Curated.pngReview changes for Approved
Image:MissingXref.pngAnnotate nodes

Ontology Terms

Pathway Ontology : stress response pathway
 

Bibliography

No bibliography


History

View all...
CompareRevisionActionTimeUserComment
123106
Featured
Approved
view14:53, 3 July 2022EgonwMade a pathway clickable
117252view10:00, 19 May 2021EweitzModified title
111813view19:05, 8 September 2020EgonwCorrected the data source to match the identifier
105902view11:36, 16 August 2019MkutmonHMDB identifier normalization
79786view15:54, 16 April 2015Mkutmonfixed unconnected line
78386view10:22, 7 January 2015MaintBotadded missing graphIds
76230view13:45, 19 June 2014SbohlerAll protein nodes are now annotated with UNIPROT IDs. Information about protein isoforms has been added.
75332view14:48, 19 May 2014SbohlerCorrected translation destination of NAD-ME1 and 2.
75325view13:35, 19 May 2014SbohlerAdapted font of "Mitochondrion" to match other pathways from same authors. Added RNA for CICDH.
75323view13:10, 19 May 2014SbohlerAdded cell border, organelle label and mRNAs for NAD-ME1 and NAD-ME2
74204view07:28, 5 April 2014EgonwRemoved a data source where no ID was given.
73921view10:09, 4 March 2014Anwesha
73920view10:08, 4 March 2014AnweshaModified description
73919view09:59, 4 March 2014SbohlerModified description
73917view09:52, 4 March 2014AnweshaAdded metabolite identifiers
73910view09:03, 4 March 2014Anweshaadded metabolite and pathway identifiers
73909view09:01, 4 March 2014AnweshaPeriodical save, work in progress
73908view08:51, 4 March 2014AnweshaPeriodical save, work in progress
73882view21:55, 26 February 2014MaintBotOntology Term : 'citric acid cycle pathway' added !
73877view21:45, 26 February 2014MaintBotFixed scaling issue
73609view13:43, 4 February 2014Sbohlerremoval of excess objects
73608view13:23, 4 February 2014AnweshaNew pathway

External references

DataNodes

View all...
Name  ↓Type  ↓Database reference  ↓Comment  ↓
2-oxoglutarateMetabolite
2-oxoglutarate dehydrogenaseProtein1.2.4.2 (Enzyme Nomenclature)
ADPMetabolite
ATPMetaboliteHMDB00538 (HMDB)
Acetyl-CoAMetaboliteHMDB01206 (HMDB)
CO2MetaboliteHMDB01967 (HMDB)
CoAMetabolite
FAD+MetaboliteHMDB01248 (HMDB)
FADH2MetaboliteHMDB01197 (HMDB)
Glutamate BiosynthesisPathway
GlycolysisPathway
H2OMetaboliteHMDB02111 (HMDB)
NAD+MetaboliteHMDB00902 (HMDB)
NADHMetaboliteHMDB01487 (HMDB)
NADP+MetaboliteHMDB00902 (HMDB)
NADPHMetaboliteHMDB01487 (HMDB)
Succinyl-CoAMetaboliteHMDB01022 (HMDB)
aconitaseProtein4.2.1.3 (Enzyme Nomenclature)
citrateMetabolite
citrate synthaseProtein2.3.3.1 (Enzyme Nomenclature)
fumaraseProtein4.2.1.2 (Enzyme Nomenclature)
fumarateMetabolite
isocitrateMetabolite
isocitrate dehydrogenaseProtein1.1.1.41 (Enzyme Nomenclature)
isocitrate dehydrogenaseProteinQ9SRZ6 (Uniprot-TrEMBL)
malateMetabolite
malate dehydrogenaseProtein1.1.1.37 (Enzyme Nomenclature)
malic enzymeProtein1.1.1.38 (Enzyme Nomenclature)
oxaloacetateMetabolite
pyruvateMetabolite
pyruvate dehydrogenaseProtein1.2.1.51 (Enzyme Nomenclature)
succinateMetabolite
succinate dehydrogenaseProtein1.3.99.1 (Enzyme Nomenclature)
succinyl-CoA synthetaseProtein6.2.1.5 (Enzyme Nomenclature)

Annotated Interactions

No annotated interactions

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