Starch metabolism (Arabidopsis thaliana)

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hexosephosphate isomeraseglucokinaseADP-glucosefructose-1,6-bisphosphatasephosphoglucomutasestarchglucose 1-phosphateamylasestarch synthasestarch phosphorylaseADP-glucose pyrophosphorylaseglucose 6-phosphatePiglucoseATPADPfructose 1,6-bisphosphatefructose 6-phosphatePiH2OATPPPiH2OADPSucrose MetabolismGlycolysisCalvin-Benson Cycle


Description

This pathways describes the synthesis and degradation reactions of starch in the chloroplast.The metabolic link with the Calvin-Benson Cycle, Sucrose Metabolism and Glycolysis are indicated.

Protein identifiers for A. thaliana are from UNIPROT.

The pathway is inspired from information drawn for Plant Physiology (Taiz

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Quality Tags

Ontology Terms

 

Bibliography

  1. Abhijit Karve, Bradley L. Rauh, Xiaoxia Xia, Muthugapatti Kandasamy, Richard B. Meagher, Jen Sheen, Brandon d. Moore; ''Expression and evolutionary features of the hexokinase gene family in Arabidopsis''; Planta, 2008 PubMed Europe PMC Scholia

History

View all...
CompareRevisionActionTimeUserComment
122568view10:35, 16 April 2022EgonwMade three pathways clickable
118335view13:12, 27 May 2021Mkutmonfixed publication ref
117256view10:01, 19 May 2021EweitzModified title
105901view11:36, 16 August 2019MkutmonHMDB identifier normalization
85067view11:56, 10 April 2016EgonwRemoved duplicate info from PubMedCentral ID.
83905view22:07, 28 December 2015SbohlerPrimary ID of proteins changed to Ensembl
83904view18:37, 28 December 2015SbohlerMinor cosmetic changes
83903view18:34, 28 December 2015Sbohlereaction identifier corrections regarding cellular compartment.
83902view17:48, 28 December 2015SbohlerReaction annotations modified, pathway corrected.
83901view17:01, 28 December 2015SbohlerReactions annotated with KEGG Reaction IDs
78385view10:22, 7 January 2015MaintBotadded missing graphIds
76153view13:40, 12 June 2014EgonwPubMed Central IDs don't work with the "PubMed" database; replaced the ID with the matching PubMed ID.
76142view14:50, 11 June 2014SbohlerAll protein nodes are now annotated with Uniprot-TrEMBL IDs. Some nodes were split into isoforms and/or subunits.
75327view13:41, 19 May 2014SbohlerAdded cell border and label for Chloroplast.
73923view10:21, 4 March 2014AnweshaOntology Term : 'starch biosynthetic pathway' added !
73922view10:16, 4 March 2014AnweshaModified description
73918view09:55, 4 March 2014SbohlerModified description
73914view09:27, 4 March 2014AnweshaAdded metabolite idenitifiers
73913view09:24, 4 March 2014AnweshaAdded metabolite identifiers
73912view09:23, 4 March 2014AnweshaPeriodical save, work in progress
73911view09:19, 4 March 2014AnweshaAdded pathway identifiers
73606view13:22, 4 February 2014AnweshaNew pathway

External references

DataNodes

View all...
NameTypeDatabase referenceComment
ADP-glucose pyrophosphorylaseProtein2.7.7.27 (Enzyme Nomenclature)
ADP-glucoseMetaboliteHMDB06557 (HMDB)
ADPMetaboliteC00008 (KEGG Compound)
ATPMetaboliteHMDB00538 (HMDB)
Calvin-Benson CyclePathwayWP2619 (WikiPathways)
GlycolysisPathwayWP2621 (WikiPathways)
H2OMetaboliteHMDB02111 (HMDB)
PPiMetaboliteCHEBI:35782 (ChEBI)
PiMetaboliteCHEBI:18367 (ChEBI)
Sucrose Metabolism PathwayWP2623 (WikiPathways)
amylaseProtein3.2.1.3 (Enzyme Nomenclature)
fructose 1,6-bisphosphateMetaboliteHMDB01058 (HMDB)
fructose 6-phosphateMetaboliteHMDB00124 (HMDB)
fructose-1,6-bisphosphataseProtein3.1.3.11 (Enzyme Nomenclature)
glucokinaseProtein2.7.1.2 (Enzyme Nomenclature)
glucose 1-phosphateMetaboliteHMDB01586 (HMDB)
glucose 6-phosphateMetaboliteHMDB01401 (HMDB)
glucoseMetaboliteHMDB00122 (HMDB)
hexosephosphate isomeraseProtein5.3.1.9 (Enzyme Nomenclature)
phosphoglucomutaseProtein5.4.2.2 (Enzyme Nomenclature)
starch phosphorylaseProtein2.4.1.1 (Enzyme Nomenclature)
starch synthaseProtein2.4.1.21 (Enzyme Nomenclature)
starchMetaboliteC00369 (KEGG Compound)

Annotated Interactions

No annotated interactions

Retrieved from "https://classic.wikipathways.org/index.php/Pathway:WP2622"
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