Glycolysis (Arabidopsis thaliana)

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1Chloroplastphosphoglycerate kinasepyruvate kinaseNADHhexokinasePPiphosphoenolpyruvate carboxylaseglycerate 3-phosphateglyceraldehyde 3-phosphate dehydrogenaseglucosefructose 1,6-bisphosphate aldolasefructose 6-phosphateglucose-6-phosphate isomerasefructose 1,6-bisphosphatePPi-dependent phosphofructokinasephosphoenolpyruvateglucose 6-phosphatemalic enzymeoxaloacetateHCO3-malatephosphopyruvate hydratasephosphoglycerate mutaseNAD+glycerate 2-phosphatepyruvateglycerate 1,3-bisphosphateDihydroxyacetone phosphateglyceraldahyde-3-phosphatetriose phosphate isomeraseNADPHNADP+ATPADPmalate dehydrogenaseNAD+NADHATPADPATPADPATP-dependent phosphofructokinasePiATPADPPiH2OPiSucrose MetabolismStarch MetabolismCalvin-Benson CycleTCA Cycle(Krebs Cycle)Valine and IsoleucineBiosynthesisPiPiCysteine and MethionineBiosynthesisLysineBiosynthesisChloroplastMitochondrion


Description

This pathway describes Glycolysis reactions in A. thaliana. The metabolic links with Sucrose metabolism, starch metabolism, Calvin Cycle, TCA Cycle (Krebs Cycle) and Chloroplastic Amino Acid Biosynthesis are represented.

Protein identifiers for A. thaliana are from UNIPROT.

The pathway is inspired from information drawn for Plant Physiology (Taiz and Zeiger) Third Edition and KEGG Pathways.

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Quality Tags

Ontology Terms

 

Bibliography

  1. Lincoln Taiz, Eduardo Zeiger; ''Plant Physiology''; Sinauer Associates, third edition, 2002
  2. Karve A, Rauh BL, Xia X, Kandasamy M, Meagher RB, Sheen J, Moore BD; ''Expression and evolutionary features of the hexokinase gene family in Arabidopsis.''; Planta, 2008 PubMed Europe PMC Scholia
  3. Karve A, Rauh BL, Xia X, Kandasamy M, Meagher RB, Sheen J, Moore BD; ''Expression and evolutionary features of the hexokinase gene family in Arabidopsis.''; Planta, 2008 PubMed Europe PMC Scholia

History

View all...
CompareRevisionActionTimeUserComment
125286view16:41, 31 January 2023LarsgwAdd ISBN to reference
115459view08:16, 21 February 2021EgonwMade four pathways clickable
105900view11:36, 16 August 2019MkutmonHMDB identifier normalization
78381view10:22, 7 January 2015MaintBotadded missing graphIds
76229view12:05, 19 June 2014SbohlerAll protein noder are now annotated with UNIPROT IDs. Information about protein isoforms was added. Subcellular location of hexokinase 2 was verified by litterature, since the information is stated wrongly in UNIPROT.
75324view13:31, 19 May 2014SbohlerAdded cell border, added RNAs for GAPC1, GAPC2, NADP-ME 1, 2 and 3.
73929view11:13, 4 March 2014AnweshaModified description
73928view11:08, 4 March 2014SbohlerModified description
73927view11:05, 4 March 2014AnweshaAdded metabolite identifiers
73926view11:03, 4 March 2014AnweshaAdded metabolite identifiers
73925view10:58, 4 March 2014AnweshaAdded pathway identifiers
73878view21:50, 26 February 2014MaintBotOntology Term : 'glycolysis pathway' added !
73680view08:28, 15 February 2014EgonwAdded a bunch of missing metabolite identifiers.
73621view11:19, 6 February 2014SbohlerPeriodical save, work in progress
73620view10:54, 6 February 2014SbohlerAdded organelle labels
73605view13:22, 4 February 2014AnweshaNew pathway

External references

DataNodes

View all...
NameTypeDatabase referenceComment
ADPMetaboliteCHEBI:16761 (ChEBI)
ATP-dependent phosphofructokinaseProtein2.7.1.11 (Enzyme Nomenclature)
ATPMetaboliteHMDB00538 (HMDB)
Calvin-Benson CyclePathwayWP2624 (WikiPathways)
Cysteine and Methionine BiosynthesisPathway
Dihydroxyacetone phosphateMetaboliteHMDB01473 (HMDB)
H2OMetaboliteHMDB02111 (HMDB)
HCO3-MetaboliteCHEBI:17544 (ChEBI)
Lysine BiosynthesisPathway
NAD+MetaboliteHMDB00902 (HMDB)
NADHMetaboliteHMDB01487 (HMDB)
NADP+MetaboliteHMDB00217 (HMDB)
NADPHMetaboliteHMDB00221 (HMDB)
PPi-dependent phosphofructokinaseProtein2.7.1.90 (Enzyme Nomenclature)
PPiMetaboliteCHEBI:35782 (ChEBI)
PiMetaboliteCHEBI:18367 (ChEBI)
Starch Metabolism PathwayWP2622 (WikiPathways)
Sucrose Metabolism PathwayWP2622 (WikiPathways)
TCA Cycle (Krebs Cycle)PathwayWP2624 (WikiPathways)
Valine and Isoleucine BiosynthesisPathway
fructose 1,6-bisphosphate aldolaseProtein4.1.2.13 (Enzyme Nomenclature)
fructose 1,6-bisphosphateMetaboliteHMDB01058 (HMDB)
fructose 6-phosphateMetaboliteHMDB00124 (HMDB)
glucose 6-phosphateMetaboliteHMDB01401 (HMDB)
glucose-6-phosphate isomeraseProtein5.3.1.9 (Enzyme Nomenclature)
glucoseMetaboliteHMDB00122 (HMDB)
glyceraldahyde-3-phosphateMetaboliteC00118 (KEGG Compound)
glyceraldehyde 3-phosphate dehydrogenaseProtein1.2.1.12 (Enzyme Nomenclature)
glycerate 1,3-bisphosphateMetaboliteCHEBI:16001 (ChEBI)
glycerate 2-phosphateMetaboliteCHEBI:58289 (ChEBI)
glycerate 3-phosphateMetaboliteCHEBI:58272 (ChEBI)
hexokinaseProtein2.7.1.1 (Enzyme Nomenclature)
malate dehydrogenaseProtein1.1.1.37 (Enzyme Nomenclature)
malateMetaboliteCHEBI:15595 (ChEBI)
malic enzymeProteinQ9LYG3 (Uniprot-TrEMBL)
oxaloacetateMetaboliteCHEBI:16452 (ChEBI)
phosphoenolpyruvate carboxylaseProtein4.1.1.31 (Enzyme Nomenclature)
phosphoenolpyruvateMetaboliteC00074 (KEGG Compound)
phosphoglycerate kinaseProtein2.7.2.3 (Enzyme Nomenclature)
phosphoglycerate mutaseProtein5.4.2.1 (Enzyme Nomenclature)
phosphopyruvate hydrataseProtein4.2.1.11 (Enzyme Nomenclature)
pyruvate kinaseProtein2.7.1.40 (Enzyme Nomenclature)
pyruvateMetaboliteCHEBI:15361 (ChEBI)
triose phosphate isomeraseProtein5.3.1.1 (Enzyme Nomenclature)

Annotated Interactions

No annotated interactions

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