From WikiPathways

This guide describes the most common uses of various elements of the WikiPathways editor palette. Examples are taken directly from the WikiPathways archives. If you have questions about specific cases, contact the discussion mailing list.

Interactions

Basic set

Line / Arrow

Use cases:

• Conversion
• Translocation
• Activation
• Binding
• Modification

Dashed line / dashed arrow

Use case:

• Reactions that include additional steps that are not described in the pathway
• Reactions that are not completely understood

T-bar

Use cases:

• Inhibition

MIM set

The WikiPathways editor includes a set of MIM interaction types, based on the Molecular Interaction Maps notation.

Data nodes

Shapes

Basic shapes

Cellular components