Protein folding (Homo sapiens)
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Description
Due to the crowded envirnoment within the cell, many proteins must interact with molecular chaperones to attain their native conformation (reviewed in Young et al., 2004). Chaperones recognize and associate with proteins in their non-native state and facilitate their folding by stabilizing the conformation of productive folding intermediates. Chaperones that take part broadly in de novo protein folding, such as the Hsp70s and the chaperonins, facilitate the folding process through cycles of substrate binding and release regulated by their ATPase activity (see Young et al., 2004; Spiess et al., 2004; Bigotti and Clarke, 2008).
Original Pathway at Reactome: http://www.reactome.org/PathwayBrowser/#DB=gk_current&FOCUS_SPECIES_ID=48887&FOCUS_PATHWAY_ID=391251
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Bibliography
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- Plimpton RL, Cuéllar J, Lai CW, Aoba T, Makaju A, Franklin S, Mathis AD, Prince JT, Carrascosa JL, Valpuesta JM, Willardson BM.; ''Structures of the Gβ-CCT and PhLP1-Gβ-CCT complexes reveal a mechanism for G-protein β-subunit folding and Gβγ dimer assembly.''; PubMed Europe PMC Scholia
- Freund A, Zhong FL, Venteicher AS, Meng Z, Veenstra TD, Frydman J, Artandi SE.; ''Proteostatic control of telomerase function through TRiC-mediated folding of TCAB1.''; PubMed Europe PMC Scholia
- Litterman N, Ikeuchi Y, Gallardo G, O'Connell BC, Sowa ME, Gygi SP, Harper JW, Bonni A.; ''An OBSL1-Cul7Fbxw8 ubiquitin ligase signaling mechanism regulates Golgi morphology and dendrite patterning.''; PubMed Europe PMC Scholia
- Kubota H, Hynes GM, Kerr SM, Willison KR.; ''Tissue-specific subunit of the mouse cytosolic chaperonin-containing TCP-1.''; PubMed Europe PMC Scholia
- Naletova IN, Popova KM, Eldarov MA, Kuravsky ML, Schmalhausen EV, Sevostyanova IA, Muronetz VI.; ''Chaperonin TRiC assists the refolding of sperm-specific glyceraldehyde-3-phosphate dehydrogenase.''; PubMed Europe PMC Scholia
- Lukov GL, Baker CM, Ludtke PJ, Hu T, Carter MD, Hackett RA, Thulin CD, Willardson BM.; ''Mechanism of assembly of G protein betagamma subunits by protein kinase CK2-phosphorylated phosducin-like protein and the cytosolic chaperonin complex.''; PubMed Europe PMC Scholia
- Bigotti MG, Clarke AR.; ''Chaperonins: The hunt for the Group II mechanism.''; PubMed Europe PMC Scholia
- Tian G, Lewis SA, Feierbach B, Stearns T, Rommelaere H, Ampe C, Cowan NJ.; ''Tubulin subunits exist in an activated conformational state generated and maintained by protein cofactors.''; PubMed Europe PMC Scholia
- Lu J, Chiang J, Iyer RR, Thompson E, Kaneski CR, Xu DS, Yang C, Chen M, Hodes RJ, Lonser RR, Brady RO, Zhuang Z.; ''Decreased glucocerebrosidase activity in Gaucher disease parallels quantitative enzyme loss due to abnormal interaction with TCP1 and c-Cbl.''; PubMed Europe PMC Scholia
- Young JC, Agashe VR, Siegers K, Hartl FU.; ''Pathways of chaperone-mediated protein folding in the cytosol.''; PubMed Europe PMC Scholia
- Yam AY, Xia Y, Lin HT, Burlingame A, Gerstein M, Frydman J.; ''Defining the TRiC/CCT interactome links chaperonin function to stabilization of newly made proteins with complex topologies.''; PubMed Europe PMC Scholia
- Won KA, Schumacher RJ, Farr GW, Horwich AL, Reed SI.; ''Maturation of human cyclin E requires the function of eukaryotic chaperonin CCT.''; PubMed Europe PMC Scholia
- Bhamidipati A, Lewis SA, Cowan NJ.; ''ADP ribosylation factor-like protein 2 (Arl2) regulates the interaction of tubulin-folding cofactor D with native tubulin.''; PubMed Europe PMC Scholia
- Lai CW, Kolesnikov AV, Frederick JM, Blake DR, Jiang L, Stewart JS, Chen CK, Barrow JR, Baehr W, Kefalov VJ, Willardson BM.; ''Phosducin-like protein 1 is essential for G-protein assembly and signaling in retinal rod photoreceptors.''; PubMed Europe PMC Scholia
- Lukov GL, Hu T, McLaughlin JN, Hamm HE, Willardson BM.; ''Phosducin-like protein acts as a molecular chaperone for G protein betagamma dimer assembly.''; PubMed Europe PMC Scholia
- Tracy CM, Kolesnikov AV, Blake DR, Chen CK, Baehr W, Kefalov VJ, Willardson BM.; ''Retinal cone photoreceptors require phosducin-like protein 1 for G protein complex assembly and signaling.''; PubMed Europe PMC Scholia
- Guenther MG, Yu J, Kao GD, Yen TJ, Lazar MA.; ''Assembly of the SMRT-histone deacetylase 3 repression complex requires the TCP-1 ring complex.''; PubMed Europe PMC Scholia
- Howlett AC, Gray AJ, Hunter JM, Willardson BM.; ''Role of molecular chaperones in G protein beta5/regulator of G protein signaling dimer assembly and G protein betagamma dimer specificity.''; PubMed Europe PMC Scholia
- Wells CA, Dingus J, Hildebrandt JD.; ''Role of the chaperonin CCT/TRiC complex in G protein betagamma-dimer assembly.''; PubMed Europe PMC Scholia
- Melki R, Batelier G, Soulié S, Williams RC.; ''Cytoplasmic chaperonin containing TCP-1: structural and functional characterization.''; PubMed Europe PMC Scholia
- Miyata Y, Shibata T, Aoshima M, Tsubata T, Nishida E.; ''The molecular chaperone TRiC/CCT binds to the Trp-Asp 40 (WD40) repeat protein WDR68 and promotes its folding, protein kinase DYRK1A binding, and nuclear accumulation.''; PubMed Europe PMC Scholia
- Tian G, Thomas S, Cowan NJ.; ''Effect of TBCD and its regulatory interactor Arl2 on tubulin and microtubule integrity.''; PubMed Europe PMC Scholia
- Zebol JR, Hewitt NM, Moretti PA, Lynn HE, Lake JA, Li P, Vadas MA, Wattenberg BW, Pitson SM.; ''The CCT/TRiC chaperonin is required for maturation of sphingosine kinase 1.''; PubMed Europe PMC Scholia
- Spiess C, Meyer AS, Reissmann S, Frydman J.; ''Mechanism of the eukaryotic chaperonin: protein folding in the chamber of secrets.''; PubMed Europe PMC Scholia
- Trinidad AG, Muller PA, Cuellar J, Klejnot M, Nobis M, Valpuesta JM, Vousden KH.; ''Interaction of p53 with the CCT complex promotes protein folding and wild-type p53 activity.''; PubMed Europe PMC Scholia
- Kasembeli M, Lau WC, Roh SH, Eckols TK, Frydman J, Chiu W, Tweardy DJ.; ''Modulation of STAT3 folding and function by TRiC/CCT chaperonin.''; PubMed Europe PMC Scholia
History
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External references
DataNodes
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Name | Type | Database reference | Comment |
---|---|---|---|
ACTB | Protein | P60709 (Uniprot-TrEMBL) | |
ADP | Metabolite | CHEBI:16761 (ChEBI) | |
ADP | Metabolite | CHEBI:16761 (ChEBI) | |
ATP | Metabolite | CHEBI:15422 (ChEBI) | |
ATP | Metabolite | CHEBI:15422 (ChEBI) | |
CCT/TriC substrate complex | Complex | REACT_17268 (Reactome) | |
CCT/TriC | Complex | REACT_17090 (Reactome) | |
CCT/TriC substrate proteins with unknown chaperones | REACT_17376 (Reactome) | ||
CCT/TriC | Complex | REACT_17102 (Reactome) | |
CCT/TriC | Complex | REACT_17160 (Reactome) | |
CCT/TriC | Complex | REACT_17874 (Reactome) | |
CCT/TriC | Complex | REACT_17889 (Reactome) | |
CCT/TriC | Complex | REACT_18085 (Reactome) | |
CCT2 | Protein | P78371 (Uniprot-TrEMBL) | |
CCT3 | Protein | P49368 (Uniprot-TrEMBL) | |
CCT4 | Protein | P50991 (Uniprot-TrEMBL) | |
CCT5 | Protein | P48643 (Uniprot-TrEMBL) | |
CCT6A | Protein | P40227 (Uniprot-TrEMBL) | |
CCT7 | Protein | Q99832 (Uniprot-TrEMBL) | |
CCT8 | Protein | P50990 (Uniprot-TrEMBL) | |
Cofactor B GTP-alpha tubulin | Complex | REACT_17838 (Reactome) | |
Cofactor D
GTP beta tubulin | Complex | REACT_17888 (Reactome) | |
Cofactor E GTP-alpha tubulin folding | Complex | REACT_17474 (Reactome) | |
GTP beta-tubulin folding intermediate | Complex | REACT_18072 (Reactome) | |
GTP | Metabolite | CHEBI:15996 (ChEBI) | |
GTP-alpha-tubulin folding intermediate | Complex | REACT_17776 (Reactome) | |
GTP | Metabolite | CHEBI:15996 (ChEBI) | |
PFDN1 | Protein | O60925 (Uniprot-TrEMBL) | |
PFDN2 | Protein | Q9UHV9 (Uniprot-TrEMBL) | |
PFDN4 | Protein | Q9NQP4 (Uniprot-TrEMBL) | |
PFDN5 | Protein | Q99471 (Uniprot-TrEMBL) | |
PFDN6 | Protein | O15212 (Uniprot-TrEMBL) | |
Pi | Metabolite | CHEBI:18367 (ChEBI) | |
Prefoldin-associated actin/tubulin | Complex | REACT_18141 (Reactome) | |
Prefoldin | Complex | REACT_17255 (Reactome) | |
SPHK1 | Protein | Q9NYA1 (Uniprot-TrEMBL) | |
SPHK1 | Protein | Q9NYA1 (Uniprot-TrEMBL) | |
TBCA | Protein | O75347 (Uniprot-TrEMBL) | |
TBCA | Protein | O75347 (Uniprot-TrEMBL) | |
TBCB | Protein | Q99426 (Uniprot-TrEMBL) | |
TBCB | Protein | Q99426 (Uniprot-TrEMBL) | |
TBCC | Protein | Q15814 (Uniprot-TrEMBL) | |
TBCC | Protein | Q15814 (Uniprot-TrEMBL) | |
TBCD | Protein | Q9BTW9 (Uniprot-TrEMBL) | |
TBCD | Protein | Q9BTW9 (Uniprot-TrEMBL) | |
TBCE | Protein | Q15813 (Uniprot-TrEMBL) | |
TBCE | Protein | Q15813 (Uniprot-TrEMBL) | |
TCP1 | Protein | P17987 (Uniprot-TrEMBL) | |
TUBA1A folding intermediate | Protein | Q71U36 (Uniprot-TrEMBL) | |
TUBA1A unfolded | Protein | Q71U36 (Uniprot-TrEMBL) | |
TUBA1B folding intermediate | Protein | P68363 (Uniprot-TrEMBL) | |
TUBA1B unfolded | Protein | P68363 (Uniprot-TrEMBL) | |
TUBA1C folding intermediate | Protein | Q9BQE3 (Uniprot-TrEMBL) | |
TUBA1C unfolded | Protein | Q9BQE3 (Uniprot-TrEMBL) | |
TUBA3C folding intermediate | Protein | Q13748 (Uniprot-TrEMBL) | |
TUBA3C unfolded | Protein | Q13748 (Uniprot-TrEMBL) | |
TUBA4A folding intermediate | Protein | P68366 (Uniprot-TrEMBL) | |
TUBA4A unfolded | Protein | P68366 (Uniprot-TrEMBL) | |
TUBB1 | Protein | Q9H4B7 (Uniprot-TrEMBL) | |
TUBB1 folding intermediate | Protein | Q9H4B7 (Uniprot-TrEMBL) | |
TUBB1 unfolded | Protein | Q9H4B7 (Uniprot-TrEMBL) | |
TUBB2A | Protein | Q13885 (Uniprot-TrEMBL) | |
TUBB2A folding intermediate | Protein | Q13885 (Uniprot-TrEMBL) | |
TUBB2A unfolded | Protein | Q13885 (Uniprot-TrEMBL) | |
TUBB2B | Protein | Q9BVA1 (Uniprot-TrEMBL) | |
TUBB2B folding intermediate | Protein | Q9BVA1 (Uniprot-TrEMBL) | |
TUBB2B unfolded | Protein | Q9BVA1 (Uniprot-TrEMBL) | |
TUBB3 | Protein | Q13509 (Uniprot-TrEMBL) | |
TUBB3 folding intermediate | Protein | Q13509 (Uniprot-TrEMBL) | |
TUBB3 unfolded | Protein | Q13509 (Uniprot-TrEMBL) | |
TUBB4A | Protein | P04350 (Uniprot-TrEMBL) | |
TUBB4A folding intermediate | Protein | P04350 (Uniprot-TrEMBL) | |
TUBB4A unfolded | Protein | P04350 (Uniprot-TrEMBL) | |
TUBB4B | Protein | P68371 (Uniprot-TrEMBL) | |
TUBB4B folding intermediate | Protein | P68371 (Uniprot-TrEMBL) | |
TUBB4B unfolded | Protein | P68371 (Uniprot-TrEMBL) | |
TUBB6 | Protein | Q9BUF5 (Uniprot-TrEMBL) | |
TUBB6 folding intermediate | Protein | Q9BUF5 (Uniprot-TrEMBL) | |
TUBB6 unfolded | Protein | Q9BUF5 (Uniprot-TrEMBL) | |
Unfolded ACTB | Protein | P60709 (Uniprot-TrEMBL) | |
VBP1 | Protein | P61758 (Uniprot-TrEMBL) | |
actin/tubulin-bound CCT/TriC | Complex | REACT_17195 (Reactome) | |
alpha-beta heterodimer | Complex | REACT_18200 (Reactome) | |
beta tubulin
GTP Cofactor D alpha tubulin GTP Cofactor E | Complex | REACT_17650 (Reactome) | |
beta-tubulin
GTP Cofactor D alpha-tubulin GTP Cofactor E Cofactor C | Complex | REACT_17144 (Reactome) | |
cofactor A
GTP beta-tubulin folding intermediate | Complex | REACT_17443 (Reactome) | |
tubulin-GTP folding intermediate | Complex | REACT_17885 (Reactome) | |
unfolded actin/tubulin | Protein | REACT_17525 (Reactome) |
Annotated Interactions
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Source | Target | Type | Database reference | Comment |
---|---|---|---|---|
ACTB | Arrow | REACT_16915 (Reactome) | ||
ADP | Arrow | REACT_16909 (Reactome) | ||
ADP | Arrow | REACT_17011 (Reactome) | ||
ATP | REACT_16909 (Reactome) | |||
ATP | REACT_17011 (Reactome) | |||
CCT/TriC | REACT_17011 (Reactome) | |||
CCT/TriC substrate proteins with unknown chaperones | REACT_16984 (Reactome) | |||
CCT/TriC | Arrow | REACT_16909 (Reactome) | ||
CCT/TriC | Arrow | REACT_16915 (Reactome) | ||
CCT/TriC | Arrow | REACT_17011 (Reactome) | ||
CCT/TriC | Arrow | REACT_17032 (Reactome) | ||
CCT/TriC | REACT_16909 (Reactome) | |||
CCT/TriC | REACT_16961 (Reactome) | |||
CCT/TriC | REACT_16980 (Reactome) | |||
CCT/TriC | REACT_16984 (Reactome) | |||
CCT/TriC | REACT_17032 (Reactome) | |||
Cofactor B GTP-alpha tubulin | REACT_16937 (Reactome) | |||
Cofactor D
GTP beta tubulin | Arrow | REACT_16986 (Reactome) | ||
Cofactor D
GTP beta tubulin | REACT_17060 (Reactome) | |||
Cofactor E GTP-alpha tubulin folding | Arrow | REACT_16937 (Reactome) | ||
Cofactor E GTP-alpha tubulin folding | REACT_17060 (Reactome) | |||
GTP beta-tubulin folding intermediate | REACT_16994 (Reactome) | |||
GTP beta-tubulin folding intermediate | REACT_17024 (Reactome) | |||
GTP-alpha-tubulin folding intermediate | REACT_16900 (Reactome) | |||
GTP-alpha-tubulin folding intermediate | REACT_17027 (Reactome) | |||
GTP | REACT_17032 (Reactome) | |||
Pi | Arrow | REACT_16915 (Reactome) | ||
Pi | Arrow | REACT_16958 (Reactome) | ||
Pi | Arrow | REACT_17032 (Reactome) | ||
Prefoldin-associated actin/tubulin | REACT_16961 (Reactome) | |||
Prefoldin | Arrow | REACT_16961 (Reactome) | ||
Prefoldin | REACT_16892 (Reactome) | |||
REACT_16892 (Reactome) | During the synthesis of actin and tubulin, the nascent ribosome-associated chains bind to the heteromeric chaperone protein, prefoldin (PFD) (Hansen et al., 1999). | |||
REACT_16900 (Reactome) | Quasi-native alpha-tubulin folding intermediates generated via ATP-dependent interaction with CCT (Tian et al., 1995) are captured in a reversible reaction by cofactors B and/or E (Tian et al., 1997), forming the tubulin intermediate/cofactor complexes Factor B:alpha tubulin or Factor E:alpha tubulin. | |||
REACT_16909 (Reactome) | The interaction between CCT and unfolded target proteins is thought to occur when CCT is in its ADP-bound state. ADP is then exchanged for ATP in CCT. | |||
REACT_16915 (Reactome) | TriC/CCT-mediated beta-actin folding involves rapid ATP-independent formation of a binary complex, followed by a slower ATP-dependent release of the native product (Gao et al., 1992). Group II chaperonins enclose substrate proteins following substrate binding through the formation of a "built- in" lid over the central cavity. Upon ATP binding, lid formation is triggered by the transition state of ATP hydrolysis (Meyer, et al., 2003). | |||
REACT_16937 (Reactome) | The factor B:alpha tubulin complex act as a reservoir capable of accepting or delivering alpha tubulin to cofactor E (Tian et al., 1997). In the reverse reaction, cofactor B may displace cofactor E in the cofactor E:alpha tubulin complex. | |||
REACT_16958 (Reactome) | Beta tubulin within the active (Factor E:alpha tubulin: Factor D:beta tubulin:Factor C )-supercomplex hydrolyzes GTP. This results in the dissociation of the complex and the release of the native tubulin heterodimer (Tian et al., 1997). | |||
REACT_16961 (Reactome) | Unfolded actins and tubulins compete efficiently for binding to TriC/CCT and their chaperonin binding sites appear to be at least in part overlapping (Melki et al., 1993). | |||
REACT_16980 (Reactome) | CCT/TRiC facilitates folding of newly translated SK1 into its mature active form (Zebol et al., 2008) | |||
REACT_16984 (Reactome) | A combination of proteomic and bioinformatics analyses of TRiC substrates has revealed that they have complex topologies that are slow folding and aggregation prone (Yam et al., 2008). These substrates are also enriched in proteins that belong to oligomeric assemblies suggesting that TRiC plays a role in promoting complex assembly (Yam et al., 2008). Two possible mechanisms describing the role of TriC have been suggested (Yam et al., 2008). The processes of TRiC-mediated folding and assembly could be directly coupled, or TRiC could fold monomeric subunits and hold them in an assembly-competent state until they associate with the appropriate partner subunits. The complete list of TriC subsrates is not yet known. Many of its substrates that are targeted during biosynthesis are conserved between mammals and yeast (Yam et al. 2008). | |||
REACT_16986 (Reactome) | Factor A:beta tubulin complex act as a reservoir capable of accepting or delivering its target tubulin protein to cofactor D (Tian et al., 1997). In the reverse reaction, Cofactor A may displace cofactor D in a cofactor D:beta tubulin complex. | |||
REACT_16994 (Reactome) | Beta-tubulin folding intermediates generated via ATP-dependent interaction with TriC/CCT are captured by cofactors A and D (Tian et al., 1996; Tian et al., 1997) in a reversible reaction forming tubulin intermediate/cofactor complexes Factor A:beta tubulin or Factor D:beta tubulin. | |||
REACT_17011 (Reactome) | The interaction between CCT and unfolded target proteins is thought to occur when CCT is in its ADP-bound state. ADP is then exchanged for ATP in CCT. | |||
REACT_17016 (Reactome) | Entry of cofactor C to the factor E:alpha tubulin: factor D:beta tubulin complex generates the active alpha:beta-supercomplex (Tian et al., 1997). | |||
REACT_17024 (Reactome) | Beta-tubulin folding intermediates generated via ATP-dependent interaction with TriC/CCT are captured by cofactors A and D (Tian et al., 1996; Tian et al., 1997) in a reversible reaction forming tubulin intermediate/cofactor complexes Factor A:beta tubulin or Factor D:beta tubulin. | |||
REACT_17027 (Reactome) | Quasi-native alpha-tubulin folding intermediates generated via ATP-dependent interaction with CCT (Tian et al., 1995) are captured in a reversible reaction by cofactors B and/or E (Tian et al., 1997), forming the tubulin intermediate/cofactor complexes Factor B:alpha tubulin or Factor E:alpha tubulin. | |||
REACT_17032 (Reactome) | Group II chaperonins enclose substrate proteins following substrate binding through the formation of a "built- in" lid over the central cavity. Upon ATP binding, lid formation is triggered by the transition state of ATP hydrolysis (Meyer, et al., 2003). In the case of CCT-mediated tubulin folding, one or more rounds of ATP hydrolysis are likely required before the association of non-exchangeable GTP with chaperonin-bound alpha tubulin. | |||
REACT_17060 (Reactome) | Factor E:alpha tubulin and Factor D:beta tubulin interact with each other in a reversible reaction to form the complex (Factor E alpha tubulin:Factor D:beta tubulin) (Tian et al., 1997). | |||
SPHK1 | REACT_16980 (Reactome) | |||
TBCA | Arrow | REACT_16986 (Reactome) | ||
TBCA | REACT_16994 (Reactome) | |||
TBCB | Arrow | REACT_16937 (Reactome) | ||
TBCB | REACT_16900 (Reactome) | |||
TBCC | Arrow | REACT_16958 (Reactome) | ||
TBCC | REACT_17016 (Reactome) | |||
TBCD | Arrow | REACT_16958 (Reactome) | ||
TBCD | REACT_16986 (Reactome) | |||
TBCD | REACT_17024 (Reactome) | |||
TBCE | Arrow | REACT_16958 (Reactome) | ||
TBCE | REACT_16937 (Reactome) | |||
TBCE | REACT_17027 (Reactome) | |||
actin/tubulin-bound CCT/TriC | Arrow | REACT_16961 (Reactome) | ||
alpha-beta heterodimer | Arrow | REACT_16958 (Reactome) | ||
beta tubulin
GTP Cofactor D alpha tubulin GTP Cofactor E | REACT_17016 (Reactome) | |||
cofactor A
GTP beta-tubulin folding intermediate | REACT_16986 (Reactome) | |||
tubulin-GTP folding intermediate | Arrow | REACT_17032 (Reactome) | ||
unfolded actin/tubulin | REACT_16892 (Reactome) |