Starch metabolism (Arabidopsis thaliana)

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ChloroplastADP-glucoseamylase 1phosphoglucomutaseglucose 1-phosphatehexokinase 3starchglucose-6-phosphate isomerase 1fructose-1,6-bisphosphatasestarch phosphorylase1glucose 6-phosphatePiglucoseATPADPfructose 1,6-bisphosphatefructose 6-phosphatePiH2OATPPPiH2OADPSucrose MetabolismGlycolysisCalvin-Benson Cyclestarch synthase 1starch synthase 2starch synthase 3ADP-glucose pyrophosphorylase LSU2ADP-glucose pyrophosphorylase LSU3ADP-glucose pyrophosphorylase LSU1ADP-glucose pyrophosphorylase SSU


Description

This pathways describes the synthesis and degradation reactions of starch in the chloroplast.The metabolic link with the Calvin-Benson Cycle, Sucrose Metabolism and Glycolysis are indicated.

Protein identifiers for A. thaliana are from UNIPROT.

The pathway is inspired from information drawn for Plant Physiology (Taiz and Zeiger) Third Edition and KEGG Pathways.

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Quality Tags

Ontology Terms

 

Bibliography

  1. Abhijit Karve, Bradley L. Rauh, Xiaoxia Xia, Muthugapatti Kandasamy, Richard B. Meagher, Jen Sheen, Brandon d. Moore; ''Expression and evolutionary features of the hexokinase gene family in Arabidopsis''; Planta, 2008 PubMed Europe PMC Scholia

History

View all...
CompareRevisionActionTimeUserComment
122568view10:35, 16 April 2022EgonwMade three pathways clickable
118335view13:12, 27 May 2021Mkutmonfixed publication ref
117256view10:01, 19 May 2021EweitzModified title
105901view11:36, 16 August 2019MkutmonHMDB identifier normalization
85067view11:56, 10 April 2016EgonwRemoved duplicate info from PubMedCentral ID.
83905view22:07, 28 December 2015SbohlerPrimary ID of proteins changed to Ensembl
83904view18:37, 28 December 2015SbohlerMinor cosmetic changes
83903view18:34, 28 December 2015Sbohlereaction identifier corrections regarding cellular compartment.
83902view17:48, 28 December 2015SbohlerReaction annotations modified, pathway corrected.
83901view17:01, 28 December 2015SbohlerReactions annotated with KEGG Reaction IDs
78385view10:22, 7 January 2015MaintBotadded missing graphIds
76153view13:40, 12 June 2014EgonwPubMed Central IDs don't work with the "PubMed" database; replaced the ID with the matching PubMed ID.
76142view14:50, 11 June 2014SbohlerAll protein nodes are now annotated with Uniprot-TrEMBL IDs. Some nodes were split into isoforms and/or subunits.
75327view13:41, 19 May 2014SbohlerAdded cell border and label for Chloroplast.
73923view10:21, 4 March 2014AnweshaOntology Term : 'starch biosynthetic pathway' added !
73922view10:16, 4 March 2014AnweshaModified description
73918view09:55, 4 March 2014SbohlerModified description
73914view09:27, 4 March 2014AnweshaAdded metabolite idenitifiers
73913view09:24, 4 March 2014AnweshaAdded metabolite identifiers
73912view09:23, 4 March 2014AnweshaPeriodical save, work in progress
73911view09:19, 4 March 2014AnweshaAdded pathway identifiers
73606view13:22, 4 February 2014AnweshaNew pathway

External references

DataNodes

View all...
NameTypeDatabase referenceComment
ADP-glucose pyrophosphorylase LSU1ProteinP55229 (Uniprot-TrEMBL)
ADP-glucose pyrophosphorylase LSU2ProteinP55230 (Uniprot-TrEMBL)
ADP-glucose pyrophosphorylase LSU3ProteinP55231 (Uniprot-TrEMBL)
ADP-glucose pyrophosphorylase SSUProteinP55228 (Uniprot-TrEMBL)
ADP-glucoseMetaboliteHMDB06557 (HMDB)
ADPMetaboliteC00008 (KEGG Compound)
ATPMetaboliteHMDB00538 (HMDB)
Calvin-Benson CyclePathwayWP2619 (WikiPathways)
GlycolysisPathwayWP2621 (WikiPathways)
H2OMetaboliteHMDB02111 (HMDB)
PPiMetaboliteCHEBI:35782 (ChEBI)
PiMetaboliteCHEBI:18367 (ChEBI)
Sucrose Metabolism PathwayWP2623 (WikiPathways)
amylase 1ProteinQ9LIR6 (Uniprot-TrEMBL)
fructose 1,6-bisphosphateMetaboliteHMDB01058 (HMDB)
fructose 6-phosphateMetaboliteHMDB00124 (HMDB)
fructose-1,6-bisphosphataseProteinP25851 (Uniprot-TrEMBL)
glucose 1-phosphateMetaboliteHMDB01586 (HMDB)
glucose 6-phosphateMetaboliteHMDB01401 (HMDB)
glucose-6-phosphate isomerase 1ProteinQ8H103 (Uniprot-TrEMBL)
glucoseMetaboliteHMDB00122 (HMDB)
hexokinase 3ProteinQ9LPS1 (Uniprot-TrEMBL)
phosphoglucomutaseProteinQ9SCY0 (Uniprot-TrEMBL)
starch phosphorylaseProteinQ9LIB2 (Uniprot-TrEMBL)
starch synthase 1ProteinQ9FNF2 (Uniprot-TrEMBL)
starch synthase 2ProteinQ9MAC8 (Uniprot-TrEMBL)
starch synthase 3ProteinF4IAG2 (Uniprot-TrEMBL)
starchMetaboliteC00369 (KEGG Compound)

Annotated Interactions

No annotated interactions

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