Phenylpropanoid biosynthesis, initial reactions (Arabidopsis thaliana)
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Description
The inference is based on Ensembl Compara orthology projection. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped ortholog or paralog are inferred to the other species. High-level events are also inferred for these events to allow for easier navigation.<p>Details of projection methods and parameters may be found <a href="/projection.html">here.</a><p>Original Pathway at Reactome: http://www.reactome.org/PathwayBrowser/#DB=gk_current&FOCUS_SPECIES_ID=48887&FOCUS_PATHWAY_ID=5402188</div>
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Ontology Terms
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DataNodes
| View all... |
| Name | Type | Database reference | Comment |
|---|---|---|---|
| 4-coumarate | Metabolite | CHEBI:32374 (ChEBI)  | |
| AT2G30490 | Protein | AT2G30490 (TAIR) | |
| H+ | Metabolite | CHEBI:15378 (ChEBI) | |
| H2O | Metabolite | CHEBI:15377 (ChEBI) | |
| L-Phe | Metabolite | CHEBI:17295 (ChEBI) | |
| NADP+ | Metabolite | CHEBI:18009 (ChEBI) | |
| NADPH | Metabolite | CHEBI:16474 (ChEBI) | |
| NH3 | Metabolite | CHEBI:16134 (ChEBI) | |
| O2 | Metabolite | CHEBI:15379 (ChEBI) | |
| phenylalanine ammonia-lyase | Protein | 5400297 (Reactome) | |
| trans-cinnamate | Metabolite | CHEBI:35697 (ChEBI) |
Annotated Interactions
| View all... |
| Source | Target | Type | Database reference | Comment |
|---|---|---|---|---|
| 4-coumarate | Arrow | 5400713 (Reactome) | ||
| 5400299 (Reactome) | This event has been computationally inferred from an event that has been demonstrated in another species. The inference is based on Ensembl Compara orthology projection. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped ortholog or paralog are inferred to the other species. High-level events are also inferred for these events to allow for easier navigation. Details of projection methods and parameters may be found here. | |||
| 5400713 (Reactome) | This event has been computationally inferred from an event that has been demonstrated in another species. The inference is based on Ensembl Compara orthology projection. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped ortholog or paralog are inferred to the other species. High-level events are also inferred for these events to allow for easier navigation. Details of projection methods and parameters may be found here. | |||
| AT2G30490 | mim-catalysis | 5400713 (Reactome) | ||
| H+ | 5400713 (Reactome) | |||
| H2O | Arrow | 5400713 (Reactome) | ||
| L-Phe | 5400299 (Reactome) | |||
| NADP+ | Arrow | 5400713 (Reactome) | ||
| NADPH | 5400713 (Reactome) | |||
| NH3 | Arrow | 5400299 (Reactome) | ||
| O2 | 5400713 (Reactome) | |||
| phenylalanine ammonia-lyase | mim-catalysis | 5400299 (Reactome) | ||
| trans-cinnamate | 5400713 (Reactome) | |||
| trans-cinnamate | Arrow | 5400299 (Reactome) |
