TCA cycle (Danio rerio)

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GlycolysisContaining an Even Number of CarbonsElectron Transport ChainContaining an Odd Number of CarbonsCytosolFatty Acid SynthesisGluconeogenesisDegradation of Fatty AcidsMitochondrionDegradation of Fatty AcidsSDHCsucla2FumaratepdhbSDHAPDK4OxaloacetatePDHA2SDHBpcdlatPDP2Acetyl-CoAdldhalpha-KetogluterateCitrateSUCLG2MalateSuccinyl-CoAdldhSuccinatecsSUCLG1PDK2PPM2COxaloacetatedlstPDHXMDH2OGDHIsocitratezgc:86647IDH2PyruvateMalatePDHA1APDK1aco2FHSDHDaMDH1aaidh3azgc:112190PDK3bSDHDbMDH1abMDH1bPDHA1Bidh3b


Description

No description

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Quality Tags

Ontology Terms

 

Bibliography

No bibliography


History

View all...
CompareRevisionActionTimeUserComment
128709view22:18, 20 February 2024EgonwFixed a few datasources and made one interaction a mim-translation
127978view21:21, 20 January 2024EweitzModified description
127977view21:17, 20 January 2024EweitzRefine node size, consolidate text containers, fix case
127976view21:11, 20 January 2024EweitzIncrease font size: 10 -> 12
127975view21:08, 20 January 2024EweitzUse proper zebrafish gene names, standard on Ensembl IDs
127974view20:41, 20 January 2024EweitzUpdate metabolite node color to standard blue
127973view20:34, 20 January 2024EweitzUse proper zebrafish gene names, standardize to Ensembl IDs
127972view20:07, 20 January 2024EweitzRefine pathway representations, change low-contrast neon green to more visible orange
127971view19:57, 20 January 2024EweitzStandardize case
125413view06:32, 13 February 2023EgonwRemoved outdated 'last modified'
119952view11:08, 29 September 2021DdiglesChanged caffeine citrate back to citrate.
116911view11:48, 15 May 2021EweitzModified title
96499view06:47, 16 March 2018EgonwReplaced a secondary ChEBI identifier with a primary identifier.
96474view15:57, 15 March 2018SusanAnnotated metabolites
96468view15:48, 15 March 2018SusanConnected lines
91937view10:56, 6 April 2017LWackersAdded alpha and beta subunits of some genes, added annotations.
77409view22:42, 5 September 2014MaintBotremoved homology mapp label
71527view19:22, 17 October 2013MaintBotAutomated update of data sources
68660view05:17, 6 July 2013MaintBotUpdated to 2013 gpml schema
67684view11:49, 26 June 2013DdiglesOntology Term : 'citrate cycle pathway' added !
53545view21:19, 8 November 2012EgonwReplaced multiple general nodes by Metabolite DataNode's.
40831view22:18, 1 March 2011MaintBotRemoved redundant pathway information and comments
34217view21:33, 9 December 2009MaintBotAutomatic update of empty xrefs
20715view11:29, 14 November 2008MaintBot[[Pathway:Danio rerio:Krebs-TCA Cycle]] moved to [[Pathway:WP19]]: Moved to stable identifier
12044view08:45, 15 May 2008MaintBotAdded to category $category
19499view08:45, 15 May 2008N.FidelmanUploaded new pathway
12042view08:45, 15 May 2008KdahlquistUploaded new pathway

External references

DataNodes

View all...
NameTypeDatabase referenceComment
Acetyl-CoAMetabolite
CitrateMetabolite
FHGeneProduct393938 (Entrez Gene)
FumarateMetabolite
IDH2GeneProduct386951 (Entrez Gene)
IsocitrateMetabolite
MDH1aaGeneProductENSDARG00000017772 (Ensembl)
MDH1abGeneProductENSDARG00000103849 (Ensembl)
MDH1bGeneProductENSDARG00000018008 (Ensembl)
MDH2GeneProduct406405 (Entrez Gene)
MalateMetabolite
OGDHGeneProduct564552 (Entrez Gene)
OxaloacetateMetabolite
PDHA1AGeneProduct406702 (Entrez Gene)
PDHA1BGeneProductENSDARG00000010555 (Ensembl)
PDHA2GeneProduct
PDHXGeneProductENSDARG00000051756 (Ensembl)
PDK1GeneProductENSDARG00000013128 (Ensembl)
PDK2GeneProduct393971 (Entrez Gene)
PDK3bGeneProductENSDARG00000099791 (Ensembl)
PDK4GeneProductENSDARG00000054848 (Ensembl)
PDP2GeneProduct58149 (Entrez Gene)
PPM2CGeneProduct
PyruvateMetabolite
SDHAGeneProduct393884 (Entrez Gene)
SDHBGeneProduct562149 (Entrez Gene)
SDHCGeneProductENSDARG00000038608 (Ensembl)
SDHDaGeneProductENSDARG00000055712 (Ensembl)
SDHDbGeneProductENSDARG00000030139 (Ensembl)
SUCLG1GeneProduct436850 (Entrez Gene)
SUCLG2GeneProduct317746 (Entrez Gene)
SuccinateMetabolite
Succinyl-CoAMetabolite
aco2GeneProduct322670 (Entrez Gene)
alpha-KetogluterateMetabolite
csGeneProduct322339 (Entrez Gene)
dlatGeneProduct324201 (Entrez Gene)
dldhGeneProduct399479 (Entrez Gene)
dlstGeneProduct368262 (Entrez Gene)
idh3aGeneProduct393926 (Entrez Gene)
idh3bGeneProductENSDARG00000044753 (Ensembl)
pcGeneProduct58068 (Entrez Gene)
pdhbGeneProduct406428 (Entrez Gene)
sucla2GeneProduct406299 (Entrez Gene)
zgc:112190GeneProduct550408 (Entrez Gene)
zgc:86647GeneProduct415247 (Entrez Gene)

Annotated Interactions

No annotated interactions

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