Host Interactions of HIV factors (Homo sapiens)

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1611, 28, 503421, 2529, 50273531, 5057522616212, 151037372634816524124, 304323, 5322, 37404132, 44, 463348264816419, 49481216413, 174528, 20, 45, 51, 54...12, 27, 4243493819, 4915434336early endosome membranemitochondrial intermembrane spacenucleoplasmearly endosome membraneGolgi lumenendoplasmic reticulum lumencytosolmitochondrial matrixPSME4 NUP188 NH3viral plus strand DNA with sticky 3' end NUP214 PSMD7 GDP RBX1 viral minus strand DNA with sticky 3' end NUP93 myristoylated nef AP2M1 NUP205 RAN PSMB9 PSMB3 RAE1 AAAS RAN PSMD5 TPR KPNB1 CUL5 Vif:Cul5:SCF complexPSMC4 PSMB6 PAK2(1-524) RPS27A(1-76) NPM1 POM121 XPO1 PSME3 UBB(77-152) GTP NUP153 PSMB8 LCKMA (P04585) protein HMGA1 VPR PSMD1 AP2M1 UBA52(1-76) AP2B1 HIV-1 mRNA CD8B VPU (P05919) protein SEH1L-2 RBX1 UBC(77-152) PSMA1 PSMA6 NUP43 AP1S2 NUP62 nucleoporin-associated Rev:Importin-beta:B23 complexPSMB2 NUP98-4 AP2A2(1-939) NUP88 RBX1 RAN myristoylated nef myristoylated nef UbNuclear Pore Complex(NPC)NUP50 PSMB1 viral plus strand DNA with sticky 3' end UBC(153-228) p6 (P04591) protein CD4 PSMC4 myristoylated nef PSMC1 CD28ELMO1 HIV-1 mRNA Rev multimer-boundHIV-1 mRNA:CRM1complexFYN VPU (P05919) VIF (P69723) protein p6 (P04591) protein ATP6V1H NUP43 PSIP1 NPM1 POM121 CD4 AP1M2 POM121C B2M(21-119) NUPL2 MA (P04591) protein IN (Integrase) (P04585) protein Ran-GTPPSMB9 KPNA1 XPO1 Rev multimer-boundHIV-1mRNA:Crm1:Ran:GTPGTP ELOC Rev:importin-beta:B23:Ran-GTP complexAP2S1 PSMD5 NUP98-5 UBC(457-532) NDC1 AP2A2(1-939) H2OPSMC3 PSMA5 UBC(533-608) PiGTP UBC(305-380) p6 (P04585) protein UBC(609-684) NUPL1-2 VPU (P05919) p6 (P04585) protein RPS27A(1-76) REV (P04618) protein PACS1RAE1 NUP98-5 APOBEC3G PSMD4 PSMC3 RanBP1:Ran-GTP:CRM1:Rev-bound mRNA complexSKP1 PSMC6 Rev-bound HIV-1 mRNANUP205 KPNB1 PSMA4 minus sssDNA AP2M1PSMD7 TPR ATP6V1HLipid RaftGTP Ran-GDPUBB(1-76) SEH1L-2 PSMA3 PSMA8 VPU (P05919) protein PSMD9 APOBEC3G-3 Reverse transcriptase/ribonuclease H myristoylated nefCD4 multiubiquitinatedCD4:Vpu:beta-TrCP_1:Skp1 complexminus sssDNA SEH1L-2 AP2B1 VIF (P69723) protein PSMD1 Nup45 AP2M1 SLC25A6 AP1B1 VPU (P05919) protein CD8:Nef ComplexREV (P04618) protein NUP85 Importin-beta:RanGTP complexMA (P04591) protein VPR PSMB3 AP1M2 Lipid Raft RAN AP2M1 CD28:Nef:Clathrin-coated Pit Adapter ProteinNUP37 BTRCNUP98-3 viral minus strand DNA with sticky 3' end REV (P04618) protein PACS1 PSMD6 Vif:APOBEC3G complexRev-multimer APOBEC3G-3 NUP98-3 NUP54 APOBEC3G:RTC withdeaminated minussssDNA:tRNAprimer:RNA templateAAAS AP1S3 UBA52(1-76) myristoylated nef AP1S1 PSMA7 KPNB1 PSME2 Revmultimer-boundHIV-1mRNA:Crm1:Ran:GTP:NPCAP2S1 AP2S1 SHFM1 VPU (P05919)PSMD10 NUP210 MA (P04585) protein PSMD11 InternalizedCD4:Nef:Clathrin-Coated Pit Adapter Protein:v-ATPaseAP1S1 UBC(381-456) UBC(229-304) LCKNUP85 NPM1p51 (RT) RAN DOCK2BTRC RAE1 KPNB1 p6 (P04591) protein NUP50 SEH1L-2 RAC1MA (P04585) protein NUP93 Ran GTPase:GDPREV (P04618) protein Cul5-SCF complex26S proteasomeMA (P04585) protein NUP88 ATP6V1H HCK PSMC2 PSMA8 AP2S1 GTP NUP160 NDC1 AP-1 ComplexGTP ATP6V1HNUP210 ATP6V1H REV (P04618) protein NUP93 XPO1PSMD14 Rev-multimerAP2A1 tRNA-Lysine3 REV (P04618) proteinmyristoylated nef NUP85 p6 (P04585) protein RAN AP1G1 REV (P04618) protein NUP37 GTP PSMB4 Rev-multimer NUPL1-2 VPR (P69726) protein SKP1HCKp6 (P04591) protein PPIA CD4:Nef ComplexAPOBEC3G:Vif:Cul5:SCF complexPSMD9 NUP93 XPO1 viral plus strand DNA with sticky 3' end POM121C HIV-1 mRNA XPO1 BTRC APOBEC3G-3 REV (P04618) proteinVIF (P69723) protein Rev multimer-boundHIV-1 mRNACD4VIF (P69723) protein p6 (P04585) protein PSMC1 UBC(305-380) REV (P04618) protein RANGAP1CDK9NUP62 APOBEC3G-3 Rev multimer-boundHIV-1mRNA:Crm1:Ran:GTPAPOBEC3G-3 GTP UBC(305-380) CD4:Vpu:beta-TrCP_1IN (Integrase) (P04585) protein CD4 Ran:GTPPSMB7 NUP107 RAN Hck-1:Nefclass I MHC complexAPOBEC3G Nef:class I MHCcomplexBANF1 NUP133 NUP155 CD4:Nef:AP-2Complex:v-ATPaseComplexHLA class I histocompatibility antigen, A-2 alpha chain p6 (P04591) protein CD4:Lck Complexmyristoylated nef APOBEC3G-3 myristoylated nef UBC(1-76) AP1M1 UBC(229-304) SKP1 NUP153 NUP107 MA (P04585) protein CDK9 GDP RAN MA (P04585) protein HIV-1 RNA template CD8B APOBEC3G p6 (P04591) protein VPU (P05919) protein Rev-multimer AP2A2(1-939) VPRRANBP1 AP2B1 Rev-multimer FYNAP2M1 TPR Lck:NefRev-multimer POM121C AP-2 ComplexAAAS Importin beta-1:Revmultimer complexNUP188 myristoylated nef AP2A1 Rev-multimerCD247-1 CUL5 GDPVIF (P69723) protein AP2S1 LCK UBC(533-608) REV (P04618) protein NUP188 CCNT1 UBC(457-532) VIF (P69723) protein CDK9 viral plus strand DNA with sticky 3' end NUP155 AP2A2(1-939) RCC1AP1S1 VPU (P05919) DOCK2 IN (Integrase) (P04585) protein AP1B1 MA (P04591) protein CD4 REV (P04618) protein REV (P04618) protein AP1S2 AP1S2 NUPL2 CCNT1 Nup45 CD4 AP2A1 APOBEC3G myristoylated nef NPM1 p6 (P04585) protein PSMA3 TPR PSME4 AP1M2 RBX1 P-TEFb(CyclinT1:Cdk9) complexCD4 IN (Integrase) (P04585) protein PSMB10 AP2B1 RANBP2 NUP98-4 NUP153 CD8B VIF (P69723) protein myristoylated nef REV (P04618) protein RANBP2 Tat (P04608)VIF (P69723) protein CUL5 HIV-1 mRNA Rev-multimer myristoylated nef CD8:Nef:AP-2Complex:v-ATPaseComplexPSMD14 myristoylated nef BTRC UBC(1-76) NUP214 PSMC6 NUP54 ATP6V1HNUP88 HMGA1 RANBP2 PIC anchored to theNPCNUP50 BTRC SLC25A5 myristoylated nef NPM1 HIV-1 mRNA NUP160 NUP160 PSIP1 PSMB5 PSMD13 UBC(1-76) Tat (P04608) AP1M1 IN (Integrase) (P04585) protein AP2M1 PSMB4 CD28 PSMB11 SLC25A4 PSMD3 PSMD10 RAN CUL5 MA (P04591) protein PSMD4 p6 (P04585) protein NUP98-5 KPNA1multi-ubiquitinatedAPOBEC3G:Vif:Cul5:SCF complexAP2A2(1-939) tRNA-Lysine3 NUP214 POM121C AP1M1 ARF1 p51 (RT) UBA52(1-76) TCEB2 NUP35 PPIA 26S proteasomeVIF (P69723) proteinPSMD8 myristoylated nefNUP210 PSMB5 UBC(153-228) VIF (P69723) protein AP2A1 PSMA2 Arf1:Nef:endosomalCD4POM121 minus sssDNA containing deaminated C residues TCEB2 VIF (P69723) protein UBB(153-228) REV (P04618) protein PSMA6 UBC(229-304) RTC with minussssDNA:tRNAprimer:RNA templateAPOBEC3G AP2S1 VPRXPO1KPNB1PAK2(1-524)NUP98-3 POM121 UBC(381-456) PSMD12 PSMF1 B2M(21-119) NUP205 AP1S3 PSMA2 Vpu:beta-TrCP1:Skp1complexCD28:Nef:Clathrin-coated Pit Adapter Protein ComplexNUP54 APOBEC3G NUP54 NUP35 UBC(609-684) Nup45 UBC(153-228) ADP/ATP translocasemonomer (generic)tRNA-Lysine3 PACS1 Nef:T cell Receptorzeta:Lipid Raft:Pak 2 ComplexHLA class I histocompatibility antigen, A-2 alpha chain ANT1:Vpr complexAP1B1 MA (P04591) protein RAE1 Nup45 NUP188 CD28 Rev-multimer Rev:Importin-beta:B23LCK Reverse transcriptase/ribonuclease H NUP155 HMGA1 DOCK2:ELMO1:RAC1:NefComplexUBC(77-152) CD4 CD247-1BANF1 NUP133 AP2A1 B2M(21-119) APOBEC3GHLA class I histocompatibility antigen, A-2 alpha chain PSMD13 UBC(457-532) SLC25A5 NUP133 myristoylated nef APOBEC3G Fyn:Nef ComplexAP2A1 RANBP2 PSMB11 Rev-multimer PSMD2 NPM1myristoylated nef PSMB7 p51 (RT) CD28 UBB(1-76) GTPNUP98-3 Nef:class I MHCcomplex:AP-1:PACS-1ComplexAP2B1 Vpr:importin-alphacomplexRAN SLC25A6 REV (P04618) protein NUP214 NUP98-5 UBC(381-456) Nef:class I MHCcomplex:Ap-1:PACS-1ComplexNUP210 NUPL2 myristoylated nef NUPL1-2 Rev:Importin-beta:NPM1ELOC IN bound to sticky3' ends of viralDNA in PICAP2A1 p6 (P04591) protein APOBEC3G-3 PSMD12 UBC(77-152) NDC1 RANBP1UBC(609-684) PSMF1 TCEB2 RAC1 HMGA1 NUP107 PPIA UBB(77-152) PSMB6 AP1S3 BANF1 VPR (P69726) protein AP-2 Complexmyristoylated nefp6 (P04585) protein GTP viral minus strand DNA with sticky 3' end UBC(533-608) RPS27A(1-76) ELOC ELMO1NUP35 NUP98-4 PSME1 NUP35 InternalizedCD8:Nef:Clathrin-Coated Pit Adapter Protein:v-ATPasePSMD11 NUP107 UBB(153-228) PSMC2 HIV-1 mRNAAAAS PSMD3 AP2A2(1-939) NUP205 CD4 Ran-GTPAP2B1 PSMB2 CD4viral minus strand DNA with sticky 3' end HIV-1 RNA template PSMC5 NUPL2 ARF1SKP1 NUP50 MA (P04585) protein NUPL1-2 PSMB8 IN (Integrase) (P04585) protein UBB(153-228) PSIP1 Nef:CD28 ComplexATP6V1H Rev-multimer AP2A2(1-939) PSME3 NUP160 myristoylated nefUBB(77-152) VIF (P69723) protein Tat:P-TEFb(CyclinT1:Cdk9) complexNUP85 PSMA7 HIV-1 unspliced RNAVPR (P69726) protein AP1G1 AP2M1 VPU (P05919) MA (P04591) protein AP2S1 HLA class I histocompatibility antigen, A-2 alpha chain APOBEC3G:RTC withminus sssDNA:tRNAprimer:RNA templateAP-2 ComplexPSMD2 AP2M1 APOBEC3G:HIV-1PICXPO1 ELOC PSMA1 HIV-1 mRNA VPR (P69726) protein NUP37 REV (P04618) protein VPR VPR VPU (P05919) protein NUP43 myristoylated nef TCEB2 AP1G1 PSMD8 VPU (P05919) NUP62 VPU (P05919) protein NUP43 MA (P04591) protein NUP62 RAN VPU (P05919) protein UBB(1-76) HIV-1 mRNA HIV-1 RNA template PSMA5 PSME2 CCNT1Rev-multimer PSME1 Rev-multimer PSIP1 NUP155 SLC25A4 NUP37 NUP133 PSMC5 KPNB1 B2M(21-119) NDC1 AP2M1 PSMB10 NUP153 PSMD6 IN (Integrase) (P04585) protein Reverse transcriptase/ribonuclease H CD4:Vpu complexCD4:Vpu:beta-TrCP_1:Skp1 complexBANF1 NUP98-4 PSMB1 SHFM1 NUP88 PSMA4 ATP6V1HKPNB1 AP2B1 614, 3973914, 3939661, 5, 9, 187776, 476, 476


Description

Like all viruses, HIV-1 must co-opt the host cell macromolecular transport and processing machinery. HIV-1 Vpr and Rev proteins play key roles in this co-optation. Efficient HIV-1 replication likewise requires evasion of APOBEC3G-mediated mutagenesis of reverse transcripts, a process mediated by the viral Vif protein. View original pathway at:Reactome.

Comments

Reactome-Converter 
Pathway is converted from Reactome ID: 162909
Reactome-version 
Reactome version: 61

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Bibliography

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History

View all...
CompareRevisionActionTimeUserComment
114683view16:15, 25 January 2021ReactomeTeamReactome version 75
113130view11:19, 2 November 2020ReactomeTeamReactome version 74
112362view15:29, 9 October 2020ReactomeTeamReactome version 73
101263view11:15, 1 November 2018ReactomeTeamreactome version 66
100801view20:43, 31 October 2018ReactomeTeamreactome version 65
100343view19:21, 31 October 2018ReactomeTeamreactome version 64
99888view16:03, 31 October 2018ReactomeTeamreactome version 63
99445view14:37, 31 October 2018ReactomeTeamreactome version 62 (2nd attempt)
96358view20:11, 9 March 2018AndrewlmasonHIV down regulated
93974view13:49, 16 August 2017ReactomeTeamreactome version 61
93575view11:27, 9 August 2017ReactomeTeamreactome version 61
87139view18:51, 18 July 2016MkutmonOntology Term : 'infectious disease pathway' added !
86678view09:24, 11 July 2016ReactomeTeamreactome version 56
83092view09:57, 18 November 2015ReactomeTeamVersion54
81413view12:56, 21 August 2015ReactomeTeamVersion53
76883view08:15, 17 July 2014ReactomeTeamFixed remaining interactions
76588view11:56, 16 July 2014ReactomeTeamFixed remaining interactions
75920view09:57, 11 June 2014ReactomeTeamRe-fixing comment source
75621view10:48, 10 June 2014ReactomeTeamReactome 48 Update
74976view13:49, 8 May 2014AnweshaFixing comment source for displaying WikiPathways description
74620view08:40, 30 April 2014ReactomeTeamNew pathway

External references

DataNodes

View all...
NameTypeDatabase referenceComment
26S proteasomeComplexR-HSA-68819 (Reactome)
AAAS ProteinQ9NRG9 (Uniprot-TrEMBL)
ADP/ATP translocase monomer (generic)ComplexR-HSA-164858 (Reactome)
ANT1:Vpr complexComplexR-HSA-180906 (Reactome)
AP-1 ComplexComplexR-HSA-167717 (Reactome)
AP-2 ComplexComplexR-HSA-167712 (Reactome)
AP1B1 ProteinQ10567 (Uniprot-TrEMBL)
AP1G1 ProteinO43747 (Uniprot-TrEMBL)
AP1M1 ProteinQ9BXS5 (Uniprot-TrEMBL)
AP1M2 ProteinQ9Y6Q5 (Uniprot-TrEMBL)
AP1S1 ProteinP61966 (Uniprot-TrEMBL)
AP1S2 ProteinP56377 (Uniprot-TrEMBL)
AP1S3 ProteinQ96PC3 (Uniprot-TrEMBL)
AP2A1 ProteinO95782 (Uniprot-TrEMBL)
AP2A2(1-939) ProteinO94973 (Uniprot-TrEMBL)
AP2B1 ProteinP63010 (Uniprot-TrEMBL)
AP2M1 ProteinQ96CW1 (Uniprot-TrEMBL)
AP2M1ProteinQ96CW1 (Uniprot-TrEMBL)
AP2S1 ProteinP53680 (Uniprot-TrEMBL)
APOBEC3G ProteinQ9HC16-1 (Uniprot-TrEMBL)
APOBEC3G-3 ProteinQ9HC16-3 (Uniprot-TrEMBL)
APOBEC3G:HIV-1PICComplexR-HSA-180618 (Reactome)
APOBEC3G:RTC with

deaminated minus sssDNA:tRNA

primer:RNA template
ComplexR-HSA-180744 (Reactome)
APOBEC3G:RTC with

minus sssDNA:tRNA

primer:RNA template
ComplexR-HSA-180616 (Reactome)
APOBEC3G:Vif:Cul5:SCF complexComplexR-HSA-180549 (Reactome)
APOBEC3GComplexR-HSA-180578 (Reactome)
ARF1 ProteinP84077 (Uniprot-TrEMBL)
ARF1ProteinP84077 (Uniprot-TrEMBL)
ATP6V1H ProteinQ9UI12 (Uniprot-TrEMBL)
ATP6V1HProteinQ9UI12 (Uniprot-TrEMBL)
Arf1:Nef:endosomal CD4ComplexR-HSA-200867 (Reactome)
B2M(21-119) ProteinP61769 (Uniprot-TrEMBL)
BANF1 ProteinO75531 (Uniprot-TrEMBL)
BTRC ProteinQ9Y297 (Uniprot-TrEMBL)
BTRCProteinQ9Y297 (Uniprot-TrEMBL)
CCNT1 ProteinO60563 (Uniprot-TrEMBL)
CCNT1ProteinO60563 (Uniprot-TrEMBL)
CD247-1 ProteinP20963-1 (Uniprot-TrEMBL)
CD247-1ProteinP20963-1 (Uniprot-TrEMBL)
CD28 ProteinP10747 (Uniprot-TrEMBL)
CD28:Nef:Clathrin-coated Pit Adapter Protein ComplexComplexR-HSA-167636 (Reactome)
CD28:Nef:Clathrin-coated Pit Adapter ProteinComplexR-HSA-167631 (Reactome)
CD28ProteinP10747 (Uniprot-TrEMBL)
CD4 ProteinP01730 (Uniprot-TrEMBL)
CD4:Lck ComplexComplexR-HSA-167529 (Reactome)
CD4:Nef ComplexComplexR-HSA-167596 (Reactome)
CD4:Nef:AP-2

Complex:v-ATPase

Complex
ComplexR-HSA-167544 (Reactome)
CD4:Vpu complexComplexR-HSA-180601 (Reactome)
CD4:Vpu:beta-TrCP_1:Skp1 complexComplexR-HSA-180592 (Reactome)
CD4:Vpu:beta-TrCP_1ComplexR-HSA-180532 (Reactome)
CD4ProteinP01730 (Uniprot-TrEMBL)
CD8:Nef ComplexComplexR-HSA-182194 (Reactome)
CD8:Nef:AP-2

Complex:v-ATPase

Complex
ComplexR-HSA-182158 (Reactome)
CD8B ProteinP10966 (Uniprot-TrEMBL)
CDK9 ProteinP50750 (Uniprot-TrEMBL)
CDK9ProteinP50750 (Uniprot-TrEMBL)
CUL5 ProteinQ93034 (Uniprot-TrEMBL)
Cul5-SCF complexComplexR-HSA-180596 (Reactome)
DOCK2 ProteinQ92608 (Uniprot-TrEMBL)
DOCK2:ELMO1:RAC1:Nef ComplexComplexR-HSA-200937 (Reactome)
DOCK2ProteinQ92608 (Uniprot-TrEMBL)
ELMO1 ProteinQ92556 (Uniprot-TrEMBL)
ELMO1ProteinQ92556 (Uniprot-TrEMBL)
ELOC ProteinQ15369 (Uniprot-TrEMBL)
FYN ProteinP06241 (Uniprot-TrEMBL)
FYNProteinP06241 (Uniprot-TrEMBL)
Fyn:Nef ComplexComplexR-HSA-200911 (Reactome)
GDP MetaboliteCHEBI:17552 (ChEBI)
GDPMetaboliteCHEBI:17552 (ChEBI)
GTP MetaboliteCHEBI:15996 (ChEBI)
GTPMetaboliteCHEBI:15996 (ChEBI)
H2OMetaboliteCHEBI:15377 (ChEBI)
HCK ProteinP08631 (Uniprot-TrEMBL)
HCKProteinP08631 (Uniprot-TrEMBL)
HIV-1 RNA template ProteinAF033819 (EMBL)
HIV-1 mRNA ProteinAF033819 (EMBL)
HIV-1 mRNARnaAF033819 (EMBL)
HIV-1 unspliced RNARnaAF033819 (EMBL)
HLA class I histocompatibility antigen, A-2 alpha chain ProteinP01892 (Uniprot-TrEMBL)
HMGA1 ProteinP17096 (Uniprot-TrEMBL)
Hck-1:NefComplexR-HSA-200872 (Reactome)
IN (Integrase) (P04585) protein ProteinP04585 (Uniprot-TrEMBL)
IN bound to sticky

3' ends of viral

DNA in PIC
ComplexR-HIV-177526 (Reactome)
Importin beta-1:Rev multimer complexComplexR-HSA-180707 (Reactome)
Importin-beta:Ran GTP complexComplexR-HSA-180719 (Reactome)
Internalized CD4:Nef:Clathrin-Coated Pit Adapter Protein:v-ATPaseComplexR-HSA-167554 (Reactome)
Internalized CD8:Nef:Clathrin-Coated Pit Adapter Protein:v-ATPaseComplexR-HSA-182230 (Reactome)
KPNA1 ProteinP52294 (Uniprot-TrEMBL)
KPNA1ProteinP52294 (Uniprot-TrEMBL)
KPNB1 ProteinQ14974 (Uniprot-TrEMBL)
KPNB1ProteinQ14974 (Uniprot-TrEMBL)
LCK ProteinP06239 (Uniprot-TrEMBL)
LCKProteinP06239 (Uniprot-TrEMBL)
Lck:NefComplexR-HIV-200922 (Reactome)
Lipid Raft R-NUL-167540 (Reactome)
Lipid RaftR-NUL-167540 (Reactome)
MA (P04585) protein ProteinP04585 (Uniprot-TrEMBL)
MA (P04591) protein ProteinP04591 (Uniprot-TrEMBL)
NDC1 ProteinQ9BTX1 (Uniprot-TrEMBL)
NH3MetaboliteCHEBI:16134 (ChEBI)
NPM1 ProteinP06748 (Uniprot-TrEMBL)
NPM1ProteinP06748 (Uniprot-TrEMBL)
NUP107 ProteinP57740 (Uniprot-TrEMBL)
NUP133 ProteinQ8WUM0 (Uniprot-TrEMBL)
NUP153 ProteinP49790 (Uniprot-TrEMBL)
NUP155 ProteinO75694 (Uniprot-TrEMBL)
NUP160 ProteinQ12769 (Uniprot-TrEMBL)
NUP188 ProteinQ5SRE5 (Uniprot-TrEMBL)
NUP205 ProteinQ92621 (Uniprot-TrEMBL)
NUP210 ProteinQ8TEM1 (Uniprot-TrEMBL)
NUP214 ProteinP35658 (Uniprot-TrEMBL)
NUP35 ProteinQ8NFH5 (Uniprot-TrEMBL)
NUP37 ProteinQ8NFH4 (Uniprot-TrEMBL)
NUP43 ProteinQ8NFH3 (Uniprot-TrEMBL)
NUP50 ProteinQ9UKX7 (Uniprot-TrEMBL)
NUP54 ProteinQ7Z3B4 (Uniprot-TrEMBL)
NUP62 ProteinP37198 (Uniprot-TrEMBL)
NUP85 ProteinQ9BW27 (Uniprot-TrEMBL)
NUP88 ProteinQ99567 (Uniprot-TrEMBL)
NUP93 ProteinQ8N1F7 (Uniprot-TrEMBL)
NUP98-3 ProteinP52948-3 (Uniprot-TrEMBL)
NUP98-4 ProteinP52948-4 (Uniprot-TrEMBL)
NUP98-5 ProteinP52948-5 (Uniprot-TrEMBL)
NUPL1-2 ProteinQ9BVL2-1 (Uniprot-TrEMBL)
NUPL2 ProteinO15504 (Uniprot-TrEMBL)
Nef:CD28 ComplexComplexR-HSA-167629 (Reactome)
Nef:T cell Receptor

zeta:Lipid Raft:

Pak 2 Complex
ComplexR-HSA-167576 (Reactome)
Nef:class I MHC

complex:AP-1:PACS-1

Complex
ComplexR-HSA-182254 (Reactome)
Nef:class I MHC

complex:Ap-1:PACS-1

Complex
ComplexR-HSA-182373 (Reactome)
Nef:class I MHC complexComplexR-HSA-182256 (Reactome)
Nuclear Pore Complex (NPC)ComplexR-HSA-157689 (Reactome)
Nup45 ProteinQ9BVL2-2 (Uniprot-TrEMBL)
P-TEFb(Cyclin T1:Cdk9) complexComplexR-HSA-167183 (Reactome)
PACS1 ProteinQ6VY07 (Uniprot-TrEMBL)
PACS1ProteinQ6VY07 (Uniprot-TrEMBL)
PAK2(1-524) ProteinQ13177 (Uniprot-TrEMBL)
PAK2(1-524)ProteinQ13177 (Uniprot-TrEMBL)
PIC anchored to the NPCComplexR-HSA-180610 (Reactome)
POM121 ProteinQ96HA1 (Uniprot-TrEMBL)
POM121C ProteinA8CG34 (Uniprot-TrEMBL)
PPIA ProteinP62937 (Uniprot-TrEMBL)
PSIP1 ProteinO75475 (Uniprot-TrEMBL)
PSMA1 ProteinP25786 (Uniprot-TrEMBL)
PSMA2 ProteinP25787 (Uniprot-TrEMBL)
PSMA3 ProteinP25788 (Uniprot-TrEMBL)
PSMA4 ProteinP25789 (Uniprot-TrEMBL)
PSMA5 ProteinP28066 (Uniprot-TrEMBL)
PSMA6 ProteinP60900 (Uniprot-TrEMBL)
PSMA7 ProteinO14818 (Uniprot-TrEMBL)
PSMA8 ProteinQ8TAA3 (Uniprot-TrEMBL)
PSMB1 ProteinP20618 (Uniprot-TrEMBL)
PSMB10 ProteinP40306 (Uniprot-TrEMBL)
PSMB11 ProteinA5LHX3 (Uniprot-TrEMBL)
PSMB2 ProteinP49721 (Uniprot-TrEMBL)
PSMB3 ProteinP49720 (Uniprot-TrEMBL)
PSMB4 ProteinP28070 (Uniprot-TrEMBL)
PSMB5 ProteinP28074 (Uniprot-TrEMBL)
PSMB6 ProteinP28072 (Uniprot-TrEMBL)
PSMB7 ProteinQ99436 (Uniprot-TrEMBL)
PSMB8 ProteinP28062 (Uniprot-TrEMBL)
PSMB9 ProteinP28065 (Uniprot-TrEMBL)
PSMC1 ProteinP62191 (Uniprot-TrEMBL)
PSMC2 ProteinP35998 (Uniprot-TrEMBL)
PSMC3 ProteinP17980 (Uniprot-TrEMBL)
PSMC4 ProteinP43686 (Uniprot-TrEMBL)
PSMC5 ProteinP62195 (Uniprot-TrEMBL)
PSMC6 ProteinP62333 (Uniprot-TrEMBL)
PSMD1 ProteinQ99460 (Uniprot-TrEMBL)
PSMD10 ProteinO75832 (Uniprot-TrEMBL)
PSMD11 ProteinO00231 (Uniprot-TrEMBL)
PSMD12 ProteinO00232 (Uniprot-TrEMBL)
PSMD13 ProteinQ9UNM6 (Uniprot-TrEMBL)
PSMD14 ProteinO00487 (Uniprot-TrEMBL)
PSMD2 ProteinQ13200 (Uniprot-TrEMBL)
PSMD3 ProteinO43242 (Uniprot-TrEMBL)
PSMD4 ProteinP55036 (Uniprot-TrEMBL)
PSMD5 ProteinQ16401 (Uniprot-TrEMBL)
PSMD6 ProteinQ15008 (Uniprot-TrEMBL)
PSMD7 ProteinP51665 (Uniprot-TrEMBL)
PSMD8 ProteinP48556 (Uniprot-TrEMBL)
PSMD9 ProteinO00233 (Uniprot-TrEMBL)
PSME1 ProteinQ06323 (Uniprot-TrEMBL)
PSME2 ProteinQ9UL46 (Uniprot-TrEMBL)
PSME3 ProteinP61289 (Uniprot-TrEMBL)
PSME4 ProteinQ14997 (Uniprot-TrEMBL)
PSMF1 ProteinQ92530 (Uniprot-TrEMBL)
PiMetaboliteCHEBI:18367 (ChEBI)
RAC1 ProteinP63000 (Uniprot-TrEMBL)
RAC1ProteinP63000 (Uniprot-TrEMBL)
RAE1 ProteinP78406 (Uniprot-TrEMBL)
RAN ProteinP62826 (Uniprot-TrEMBL)
RANBP1 ProteinP43487 (Uniprot-TrEMBL)
RANBP1ProteinP43487 (Uniprot-TrEMBL)
RANBP2 ProteinP49792 (Uniprot-TrEMBL)
RANGAP1ProteinP46060 (Uniprot-TrEMBL)
RBX1 ProteinP62877 (Uniprot-TrEMBL)
RCC1ProteinP18754 (Uniprot-TrEMBL)
REV (P04618) protein ProteinP04618 (Uniprot-TrEMBL)
REV (P04618) proteinProteinP04618 (Uniprot-TrEMBL)
RPS27A(1-76) ProteinP62979 (Uniprot-TrEMBL)
RTC with minus

sssDNA:tRNA

primer:RNA template
ComplexR-HIV-173774 (Reactome)
Ran GTPase:GDPComplexR-HSA-165549 (Reactome)
Ran-GDPComplexR-HSA-180701 (Reactome)
Ran-GTPComplexR-HSA-180738 (Reactome)
Ran:GTPComplexR-HSA-180686 (Reactome)
RanBP1:Ran-GTP:CRM1:Rev-bound mRNA complexComplexR-HSA-180718 (Reactome)
Rev

multimer-bound HIV-1

mRNA:Crm1:Ran:GTP:NPC
ComplexR-HSA-165531 (Reactome)
Rev multimer-bound

HIV-1

mRNA:Crm1:Ran:GTP
ComplexR-HSA-165537 (Reactome)
Rev multimer-bound

HIV-1

mRNA:Crm1:Ran:GTP
ComplexR-HSA-165552 (Reactome)
Rev multimer-bound

HIV-1 mRNA:CRM1

complex
ComplexR-HSA-180873 (Reactome)
Rev multimer-bound HIV-1 mRNAComplexR-HIV-165532 (Reactome)
Rev-bound HIV-1 mRNAComplexR-HIV-165535 (Reactome)
Rev-multimer R-HIV-165542 (Reactome)
Rev-multimer R-HIV-165543 (Reactome)
Rev-multimerR-HIV-165542 (Reactome)
Rev-multimerR-HIV-165543 (Reactome)
Rev:Importin-beta:B23ComplexR-HSA-180711 (Reactome)
Rev:Importin-beta:NPM1ComplexR-HSA-180724 (Reactome)
Rev:importin-beta:B23:Ran-GTP complexComplexR-HSA-180712 (Reactome)
Reverse transcriptase/ribonuclease H ProteinP04585 (Uniprot-TrEMBL)
SEH1L-2 ProteinQ96EE3-2 (Uniprot-TrEMBL)
SHFM1 ProteinP60896 (Uniprot-TrEMBL)
SKP1 ProteinP63208 (Uniprot-TrEMBL)
SKP1ProteinP63208 (Uniprot-TrEMBL)
SLC25A4 ProteinP12235 (Uniprot-TrEMBL)
SLC25A5 ProteinP05141 (Uniprot-TrEMBL)
SLC25A6 ProteinP12236 (Uniprot-TrEMBL)
TCEB2 ProteinQ15370 (Uniprot-TrEMBL)
TPR ProteinP12270 (Uniprot-TrEMBL)
Tat (P04608) ProteinP04608 (Uniprot-TrEMBL)
Tat (P04608)ProteinP04608 (Uniprot-TrEMBL)
Tat:P-TEFb(Cyclin T1:Cdk9) complexComplexR-NUL-167237 (Reactome)
UBA52(1-76) ProteinP62987 (Uniprot-TrEMBL)
UBB(1-76) ProteinP0CG47 (Uniprot-TrEMBL)
UBB(153-228) ProteinP0CG47 (Uniprot-TrEMBL)
UBB(77-152) ProteinP0CG47 (Uniprot-TrEMBL)
UBC(1-76) ProteinP0CG48 (Uniprot-TrEMBL)
UBC(153-228) ProteinP0CG48 (Uniprot-TrEMBL)
UBC(229-304) ProteinP0CG48 (Uniprot-TrEMBL)
UBC(305-380) ProteinP0CG48 (Uniprot-TrEMBL)
UBC(381-456) ProteinP0CG48 (Uniprot-TrEMBL)
UBC(457-532) ProteinP0CG48 (Uniprot-TrEMBL)
UBC(533-608) ProteinP0CG48 (Uniprot-TrEMBL)
UBC(609-684) ProteinP0CG48 (Uniprot-TrEMBL)
UBC(77-152) ProteinP0CG48 (Uniprot-TrEMBL)
UbComplexR-HSA-113595 (Reactome)
VIF (P69723) protein ProteinP69723 (Uniprot-TrEMBL)
VIF (P69723) proteinProteinP69723 (Uniprot-TrEMBL)
VPR (P69726) protein ProteinP69726 (Uniprot-TrEMBL)
VPR ProteinP69726 (Uniprot-TrEMBL)
VPRProteinP69726 (Uniprot-TrEMBL)
VPU (P05919) ProteinP05919 (Uniprot-TrEMBL)
VPU (P05919) protein ProteinP05919 (Uniprot-TrEMBL)
VPU (P05919)ProteinP05919 (Uniprot-TrEMBL)
Vif:APOBEC3G complexComplexR-HSA-180543 (Reactome)
Vif:Cul5:SCF complexComplexR-HSA-180539 (Reactome)
Vpr:importin-alpha complexComplexR-HSA-180623 (Reactome)
Vpu:beta-TrCP1:Skp1 complexComplexR-HSA-180567 (Reactome)
XPO1 ProteinO14980 (Uniprot-TrEMBL)
XPO1ProteinO14980 (Uniprot-TrEMBL)
class I MHC complexComplexR-HSA-182275 (Reactome)
minus sssDNA R-HIV-173823 (Reactome)
minus sssDNA containing deaminated C residues R-HIV-180629 (Reactome)
multi-ubiquitinated APOBEC3G:Vif:Cul5:SCF complexComplexR-HSA-180577 (Reactome)
multiubiquitinated CD4:Vpu:beta-TrCP_1:Skp1 complexComplexR-HSA-180530 (Reactome)
myristoylated nef ProteinP04601 (Uniprot-TrEMBL)
myristoylated nefProteinP04601 (Uniprot-TrEMBL)
nucleoporin-associated Rev:Importin-beta:B23 complexComplexR-HSA-180720 (Reactome)
p51 (RT) ProteinP04585 (Uniprot-TrEMBL)
p6 (P04585) protein ProteinP04585 (Uniprot-TrEMBL)
p6 (P04591) protein ProteinP04591 (Uniprot-TrEMBL)
tRNA-Lysine3 R-HSA-173782 (Reactome)
viral minus strand DNA with sticky 3' end R-HIV-177533 (Reactome)
viral plus strand DNA with sticky 3' end R-HIV-177540 (Reactome)

Annotated Interactions

View all...
SourceTargetTypeDatabase referenceComment
26S proteasomemim-catalysisR-HSA-180573 (Reactome)
26S proteasomemim-catalysisR-HSA-180603 (Reactome)
ADP/ATP translocase monomer (generic)R-HSA-180905 (Reactome)
ANT1:Vpr complexArrowR-HSA-180905 (Reactome)
AP-1 ComplexArrowR-HSA-182263 (Reactome)
AP-1 ComplexR-HSA-182279 (Reactome)
AP-2 ComplexArrowR-HSA-167601 (Reactome)
AP-2 ComplexArrowR-HSA-182171 (Reactome)
AP-2 ComplexR-HSA-167537 (Reactome)
AP-2 ComplexR-HSA-182186 (Reactome)
AP2M1R-HSA-167633 (Reactome)
APOBEC3G:HIV-1PICArrowR-HSA-180630 (Reactome)
APOBEC3G:RTC with

deaminated minus sssDNA:tRNA

primer:RNA template
ArrowR-HSA-180632 (Reactome)
APOBEC3G:RTC with

minus sssDNA:tRNA

primer:RNA template
ArrowR-HSA-180634 (Reactome)
APOBEC3G:RTC with

minus sssDNA:tRNA

primer:RNA template
R-HSA-180632 (Reactome)
APOBEC3G:Vif:Cul5:SCF complexArrowR-HSA-180555 (Reactome)
APOBEC3G:Vif:Cul5:SCF complexR-HSA-180540 (Reactome)
APOBEC3G:Vif:Cul5:SCF complexmim-catalysisR-HSA-180540 (Reactome)
APOBEC3GR-HSA-180602 (Reactome)
APOBEC3GR-HSA-180630 (Reactome)
APOBEC3GR-HSA-180634 (Reactome)
APOBEC3Gmim-catalysisR-HSA-180632 (Reactome)
ARF1R-HSA-200879 (Reactome)
ATP6V1HArrowR-HSA-167601 (Reactome)
ATP6V1HArrowR-HSA-182171 (Reactome)
ATP6V1HR-HSA-167537 (Reactome)
ATP6V1HR-HSA-182186 (Reactome)
Arf1:Nef:endosomal CD4ArrowR-HSA-200879 (Reactome)
BTRCR-HSA-180591 (Reactome)
CCNT1R-HSA-167235 (Reactome)
CD247-1R-HSA-164943 (Reactome)
CD28:Nef:Clathrin-coated Pit Adapter Protein ComplexArrowR-HSA-167633 (Reactome)
CD28:Nef:Clathrin-coated Pit Adapter Protein ComplexR-HSA-167637 (Reactome)
CD28:Nef:Clathrin-coated Pit Adapter ProteinArrowR-HSA-167637 (Reactome)
CD28R-HSA-167630 (Reactome)
CD4:Lck ComplexR-HSA-167566 (Reactome)
CD4:Nef ComplexArrowR-HSA-167566 (Reactome)
CD4:Nef ComplexR-HSA-167537 (Reactome)
CD4:Nef:AP-2

Complex:v-ATPase

Complex
ArrowR-HSA-167537 (Reactome)
CD4:Nef:AP-2

Complex:v-ATPase

Complex
R-HSA-167597 (Reactome)
CD4:Vpu complexArrowR-HSA-180606 (Reactome)
CD4:Vpu complexR-HSA-180591 (Reactome)
CD4:Vpu:beta-TrCP_1:Skp1 complexArrowR-HSA-180599 (Reactome)
CD4:Vpu:beta-TrCP_1:Skp1 complexR-HSA-180597 (Reactome)
CD4:Vpu:beta-TrCP_1:Skp1 complexmim-catalysisR-HSA-180597 (Reactome)
CD4:Vpu:beta-TrCP_1ArrowR-HSA-180591 (Reactome)
CD4:Vpu:beta-TrCP_1R-HSA-180599 (Reactome)
CD4R-HSA-180606 (Reactome)
CD4R-HSA-200879 (Reactome)
CD8:Nef ComplexR-HSA-182186 (Reactome)
CD8:Nef:AP-2

Complex:v-ATPase

Complex
ArrowR-HSA-182186 (Reactome)
CD8:Nef:AP-2

Complex:v-ATPase

Complex
R-HSA-182198 (Reactome)
CDK9R-HSA-167235 (Reactome)
Cul5-SCF complexR-HSA-180555 (Reactome)
DOCK2:ELMO1:RAC1:Nef ComplexArrowR-HSA-200952 (Reactome)
DOCK2R-HSA-200952 (Reactome)
ELMO1R-HSA-200952 (Reactome)
FYNR-HSA-200908 (Reactome)
Fyn:Nef ComplexArrowR-HSA-200908 (Reactome)
GDPArrowR-HSA-180687 (Reactome)
GTPR-HSA-180687 (Reactome)
H2OR-HSA-180632 (Reactome)
HCKR-HSA-200858 (Reactome)
HIV-1 mRNAR-HSA-165027 (Reactome)
HIV-1 unspliced RNAArrowR-HSA-165028 (Reactome)
Hck-1:NefArrowR-HSA-200858 (Reactome)
IN bound to sticky

3' ends of viral

DNA in PIC
R-HSA-180622 (Reactome)
IN bound to sticky

3' ends of viral

DNA in PIC
R-HSA-180627 (Reactome)
IN bound to sticky

3' ends of viral

DNA in PIC
R-HSA-180630 (Reactome)
Importin beta-1:Rev multimer complexArrowR-HSA-180709 (Reactome)
Importin beta-1:Rev multimer complexR-HSA-180725 (Reactome)
Importin-beta:Ran GTP complexArrowR-HSA-180736 (Reactome)
Internalized CD4:Nef:Clathrin-Coated Pit Adapter Protein:v-ATPaseArrowR-HSA-167597 (Reactome)
Internalized CD4:Nef:Clathrin-Coated Pit Adapter Protein:v-ATPaseR-HSA-167601 (Reactome)
Internalized CD8:Nef:Clathrin-Coated Pit Adapter Protein:v-ATPaseArrowR-HSA-182198 (Reactome)
Internalized CD8:Nef:Clathrin-Coated Pit Adapter Protein:v-ATPaseR-HSA-182171 (Reactome)
KPNA1R-HSA-180627 (Reactome)
KPNB1R-HSA-180709 (Reactome)
LCKArrowR-HSA-167566 (Reactome)
LCKR-HSA-200954 (Reactome)
Lck:NefArrowR-HSA-200954 (Reactome)
Lipid RaftR-HSA-164943 (Reactome)
NH3ArrowR-HSA-180632 (Reactome)
NPM1ArrowR-HSA-180736 (Reactome)
NPM1R-HSA-180725 (Reactome)
Nef:CD28 ComplexArrowR-HSA-167630 (Reactome)
Nef:CD28 ComplexR-HSA-167633 (Reactome)
Nef:T cell Receptor

zeta:Lipid Raft:

Pak 2 Complex
ArrowR-HSA-164943 (Reactome)
Nef:class I MHC

complex:AP-1:PACS-1

Complex
ArrowR-HSA-182286 (Reactome)
Nef:class I MHC

complex:AP-1:PACS-1

Complex
R-HSA-182263 (Reactome)
Nef:class I MHC

complex:Ap-1:PACS-1

Complex
ArrowR-HSA-182279 (Reactome)
Nef:class I MHC

complex:Ap-1:PACS-1

Complex
R-HSA-182286 (Reactome)
Nef:class I MHC complexArrowR-HSA-182243 (Reactome)
Nef:class I MHC complexR-HSA-182279 (Reactome)
Nuclear Pore Complex (NPC)ArrowR-HSA-165047 (Reactome)
Nuclear Pore Complex (NPC)ArrowR-HSA-180732 (Reactome)
Nuclear Pore Complex (NPC)R-HSA-165043 (Reactome)
Nuclear Pore Complex (NPC)R-HSA-180622 (Reactome)
Nuclear Pore Complex (NPC)R-HSA-180710 (Reactome)
P-TEFb(Cyclin T1:Cdk9) complexArrowR-HSA-167235 (Reactome)
P-TEFb(Cyclin T1:Cdk9) complexR-HSA-167234 (Reactome)
PACS1ArrowR-HSA-182263 (Reactome)
PACS1R-HSA-182279 (Reactome)
PAK2(1-524)R-HSA-164943 (Reactome)
PIC anchored to the NPCArrowR-HSA-180622 (Reactome)
PiArrowR-HSA-165055 (Reactome)
R-HSA-164943 (Reactome) Nef drives the formation of lipid raft complexes.
R-HSA-165027 (Reactome) Nuclear export of the unspliced and partially spliced HIV-1 transcripts requires the association of the HIV-1 Rev protein with a cis-acting RNA sequence known as the Rev Response Element (RRE) located within the env gene. The RRE forms a stem loop structure that associates with an arginine-rich RNA binding motif (ARM) within Rev.
R-HSA-165028 (Reactome) The association of RanBp1 with RanGTP:CRM1:Rev promotes disassembly of the complex and release of the Rev:RNA cargo (Mahboobi et al. 2015).
R-HSA-165033 (Reactome) In order for Rev to function, multiple molecules must bind sequentiallly to the RRE (Malim and Cullen 1991).
R-HSA-165034 (Reactome) RanGTP binds to a preformed Rev-CRM1 complex.
R-HSA-165043 (Reactome) The Rev multimer-bound HIV-1 mRNA:Crm1:Ran:GTP complex associates with the NPC (Askjaer et al. 1998; Daugherty et al. 2010).
R-HSA-165047 (Reactome) Crm1 is a nucleocytoplasmic transport factor that is believed to interact with nucleoporins facilitating docking of the RRE-Rev-CRM1-RanGTP complex to the nuclear pore and the translocation of the complex across the nuclear pore complex (see Cullen 1998) Crm1 has been found in complex with two such nucleoporins, CAN/Nup214 and Nup88 which have been shown to be components of the human nuclear pore complex (Fornerod et al., 1997).
R-HSA-165055 (Reactome) Ran-GAP, a Ran-specific GTPase-activating protein converts Ran-GTP to Ran-GDP, producing a Ran-GTP gradient across the nuclear membrane.
R-HSA-167234 (Reactome) Tat associates with the Cyclin T1 subunit of P-TEFb (Cyclin T1:Cdk9) through a region of cysteine-rich and core sequences referred to as the ARM domain within Tat (Wei et al., 1998; see also Herrmann 1995). This interaction is believed to involve metal ions stabilized by cysteine residues in both proteins (Bieniasz et al., 1998; Garber et al., 1998).
R-HSA-167235 (Reactome) Tat associates with the Cyclin T1 subunit of the cellular kinase complex TAK/P-TEFb and recruits this complex to the TAR sequence in the HIV-1 RNA (Wei et al. 1998). This association between TAT, TAR and TAK/P-TEFb is believed to bring the catalytic subunit of TAK/P-TEFb in close proximity to Pol II where it hyperphosphorylates the CTD of Pol II .
R-HSA-167537 (Reactome) AP-2 is recruited to the newly formed Nef:CD4 complex
R-HSA-167566 (Reactome) Nef disrupts the CD4 Lck complex
R-HSA-167597 (Reactome) The Nef:CD4:AP-2 complex is internalized
R-HSA-167601 (Reactome) CD4 is degraded
R-HSA-167630 (Reactome) Down-regulation of CD28 receptors involves a dileucine-based motif in the second disordered loop of Nef, which connects Nef to adaptor protein (AP) complex, which is a part of cellular endocytosis machinery.
R-HSA-167633 (Reactome) Nef induces accelerated endocytosis of CD28 via clathrin-coated pits.
R-HSA-167637 (Reactome) Once Nef has induced endocytosis of CD28, CD28 containing vesicles are targeted for lysosomal degradation.
R-HSA-180540 (Reactome) APOBEC3G is multi-ubiquitinated by the Vif-Cul5-SCF complex.
R-HSA-180555 (Reactome) The interaction between Vif and the E3 ubiquitin ligase complex (Cullin5, Elongin B and Elongin C, and Rbx1) takes place through direct binding of the SOCS box motif in the viral protein Vif to the host protein Elongin C. Moreover, a conserved HCCH motif in Vif allows binding to Cullin 5.
R-HSA-180573 (Reactome) Ubiquitinated CD4 is then subject to proteasome-mediated degradation.
R-HSA-180591 (Reactome) Vpu links beta-TrCP to CD4 at the ER membrane through interactions with beta-TrCP and the cytoplasmic tail of CD4.
R-HSA-180597 (Reactome) CD4 is ubiquitinated in the CD4:Vpu–h-ßTrCP:Skp1 complex.
R-HSA-180599 (Reactome) The SKP1 component of the SCF complex is recruited to the Vpu:beta-TrCP:CD4 complex.
R-HSA-180602 (Reactome) The HIV-1 Vif protein associates with the DNA editing enzyme APOBEC3G Marin et al) . The binding site has not yet been mapped but emerging evidence suggest that the N-terminal lregion of Vif is essential for APOBEC3G recognition (Tian et al) .
Substitution of a single amino acid in the human APOBEC3G (Asp128Lys) abolishes binding and renders it resistant to HIV-1 Vif (Schrofelbauer et al; Bogerd et al.).

R-HSA-180603 (Reactome) Following multi-ubiquitination by the Vif-Cul5-SCF complex, APOBEC3G is degraded by the 26S proteasome.
R-HSA-180606 (Reactome) Vpu is expressed in the ER and associates with a membrane-proximal region in the cytoplasmic tail of CD4.
R-HSA-180622 (Reactome) Vpr binds to nucleoporins.
R-HSA-180627 (Reactome) Vpr interacts with importin-alpha through alphaH1 and alphaH2. The interaction via alphaH1 is indispensable for the nuclear entry of Vpr (Kamata et al., 2005) .
R-HSA-180630 (Reactome) APOBEC3G is incorporated into virus particles through its association with components of the viral RNA packaging machinery. It binds to the nucleocapsid portion of Gag (NC), a region of the polyprotein that associates with genomic RNA and functions in RNA encapsidation.
R-HSA-180632 (Reactome) During reverse transcription, APOBEC3G-mediated minus-strand deamination occurs within a CC dinucleotide context over the entire length of the HIV-1 genome (Yu et al., 2004).
The polypurine tract is essential for plus strand synthesis and is located at the 3' end of the retroviral genome. HIV-1 encodes an additional central polypurine tract located in the middle of the genome which also serves as primer for plus strand synthesis.
Deamination of the minus strand continues throughout its synthesis with the frequency of deamination events increasing from the 5' to 3' regions. A 400bp region downstream of the central polypurine tract seems to be protected from deamination (Wurtzer et al., 2006)
R-HSA-180634 (Reactome) In the target cell, HIV-1-associated APOBEC3G binds to the HIV-1 reverse transcript minus strand and catalyzes the deamination of cytidines in a specific dinucleotide context (e.g., dCC). In contrast, APOBEC3F and APOBEC3B display a preference for dTC.
R-HSA-180687 (Reactome) Free, nuclear RanGTP is required for export processes out of the nucleus. RCC1 catalyses the conversion of Ran-GDP to Ran-GTP in the nucleus.
R-HSA-180709 (Reactome) The association of Rev with importin-beta is mediated by the Rev nuclear localisation signal.
R-HSA-180710 (Reactome) The Rev-importin beta-B23 complex is recruited to the nuclear pore by an interaction between importin beta and nucleoporin.
R-HSA-180725 (Reactome) B23 may function as a shuttle for the import of HIV Rev from the cytoplasm into the nucleus or nucleolus permitting additional rounds of export of viral RNAs.
R-HSA-180728 (Reactome) Inside the nucleus, Ran-GTP associates with importin-beta.
R-HSA-180732 (Reactome) Following the association of Rev with importin-beta, the Rev:B23:importin-beta complex is imported into the nucleus.
R-HSA-180736 (Reactome) The association of importin-beta with Ran-GTP causes the disassembly of the Rev-importin ß-B23 complex releasing the Rev in the nucleus.
R-HSA-180739 (Reactome) Upon translocation to the cytoplasm, RanBP1 associates with Ran-GTP in the Rev-CRM1-Ran-GTP complex.
R-HSA-180855 (Reactome) Vpr translocates to the mitochondria.
R-HSA-180885 (Reactome) CRM1 associates directly with Rev through the Rev nuclear export signal (NES) domain and acts as the nuclear export receptor for the Rev-RRE ribonucleoprotein complex.
R-HSA-180905 (Reactome) Vpr interacts with the PTPC component ANT1. This interaction induces mitochondrial membrane permeabilization and release of cytochrome c and apoptotic factors.
R-HSA-182171 (Reactome) Once the CD8alphabeta receptor has been internalized via endocytosis, the vesicles are targeted for lysosomal degradation.
R-HSA-182186 (Reactome) The presence of Nef accelerates endocytosis and lysosomal degradation of the transmembrane glycoprotein CD8. Nef facilitates a cascade of protein interactions that ultimately result in the degradation of internalized CD8 protein. The final set of protein interactions that direct Nef to the beta-subunit of the COPI coatomers are at this time unclear.
A number of sites within Nef are proposed to be required for CD8 down-regulation, the myristoylation signal and N-terminal anchor regions, the C-terminal flexible loop, and amino acid positions 57 to 58. Consistent with all reported Nef functions, the myristoylation signal was found to be essential for CD8 down-modulation. The flexible loop contains a dileucine-based internalization motif, which is flanked by acidic clusters and is involved in enhanced internalization of the Nef-CD4 complex.
R-HSA-182198 (Reactome) The CD8alphabeta receptor is internalized via endocytosis.
R-HSA-182243 (Reactome) Nef disrupts the transport of major histocompatibility complex class I molecules by first binding to the the cytoplasmic side of the transmembrane complex.
R-HSA-182263 (Reactome) Once the complex of Nef, major histocompatibility complex class I molecules, PACS-1 and AP-1 arrives at the endosome, the MHC I complex is targeted for degradation.
R-HSA-182279 (Reactome) The complex formed by Nef and the major histocompatibility complex class I molecules creates binding sites for PACS-1 and the AP-1 complex.
R-HSA-182286 (Reactome) The complex of Nef, major histocompatibility complex class I molecules, PACS-1 and AP-1 is transported from the trans-Golgi network to an endosome, where the MHC I complex will be degraded.
R-HSA-200858 (Reactome) The protein Hck is a member of the Src family of non-receptor tyrosine kinases which is preferentially expressed in haematopoietic cells of the myeloid and B-lymphoid lineages. Src kinases are inhibited by tyrosine-phosphorylation at a carboxy-terminal site. The SH2 domains of these enzymes play an essential role in this regulation by binding to the tyrosine-phosphorylated tail. The SH2 domain of Hck regulates enzymatic activity indirectly; intramolecular interactions between the SH3 and catalytic domains appear to stabilize an inactive form of the kinase. The HIV-1 Nef protein, which is a high-affinity ligand for the Hck SH3 domain, binds to either the downregulated or activated form of Hck causing a large increase in Hck catalytic activity. The intact SH3-binding motif in Nef is crucial for Hck activation.
R-HSA-200879 (Reactome) The HIV Nef protein downregulates CD4 through sequential connection with clathrin-coated pits and the COP1 coatomer, resulting in accelerated endocytosis and lysosomal targeting. The small GTPase ARF1 controls the Nef-induced, COP-mediated late-endosomal targeting of CD4. Nef binds ARF1 directly and can recruit the GTPase onto endosomal membranes, leading to the eventual degradation of CD4 (Faure et al. 2004).
R-HSA-200908 (Reactome) Nef has been shown to bind specifically to a subset of the Src family of kinases. Nef/Fyn interaction centers on a proline-rich motif (Pro-x-x-Pro), which is implicated in SH3 binding. This domain is partially disordered in the absence of the binding partner; when bound this motif fully adopts a left-handed polyproline type II helix conformation upon complex formation with the Fyn SH3 domain. Within this structure the arginine residue (Arg77) of Nef interacts with Asp 100 of the RT loop within the Fyn SH3 domain, and triggers a hydrogen-bond rearrangement which allows the loop to adapt to complement the Nef surface. The Arg96 residue of the Fyn SH3 domain is specifically accommodated in the same hydrophobic pocket of Nef. The Nef-Fyn complex forms in vivo and may have a crucial role in the T cell perturbating action of Nef by altering T cell receptor signaling.
R-HSA-200952 (Reactome) The infectious cycle of primate lentiviruses is intimately linked to interactions between cells of the immune system. Nef, a potent virulence factor, alters cellular environments to increase lentiviral replication in the host, functioning as an adaptor protein. Nef activates Rac in T cell lines and in primary T cells following infection with HIV-1 in the absence of antigenic stimuli. Nef activates Rac by binding the DOCK2-ELMO1 complex, and this interaction is linked to the abilities of Nef to inhibit chemotaxis and promote T cell activation. Nef targets a critical switch that regulates Rac GTPases downstream of chemokine- and antigen-initiated signaling pathways. This interaction enables Nef to influence multiple aspects of T cell function and thus provides an important mechanism by which Nef impacts pathogenesis by primate lentiviruses.
R-HSA-200954 (Reactome) The Nef protein of the primate lentiviruses, including human immunodeficiency virus type 1 (HIV-1) and simian immunodeficiency virus (SIV), is a myristylated protein associated with increased viral replication and enhanced pathogenicity. Both the potentiation of T-lymphocyte activation and the enhanced serine-phosphorylation of HIV-1 capsid by Nef correlate with increased viral replication. The Nef proteins from HIV-1 and SIV bind to Lck. The SH3 and SH2 domains of Lck are sufficient for coprecipitation with non-tyrosine-phosphorylated Nef proteins. The conserved core region of HIV-1 Nef is essential for the interaction with Lck and is also important for enhanced HIV-1 replication in T-lymphocytes. The SIV and HIV-1 Nef proteins are differentially tyrosine-phosphorylated. The kinase-active Lck tyrosine-phosphorylates SIVmac239 Nef but does not phosphorylate HIV-1 Nef.
RAC1R-HSA-200952 (Reactome)
RANBP1ArrowR-HSA-165028 (Reactome)
RANBP1ArrowR-HSA-165055 (Reactome)
RANBP1R-HSA-180739 (Reactome)
RANGAP1ArrowR-HSA-165055 (Reactome)
RCC1mim-catalysisR-HSA-180687 (Reactome)
REV (P04618) proteinArrowR-HSA-165028 (Reactome)
REV (P04618) proteinR-HSA-165027 (Reactome)
RTC with minus

sssDNA:tRNA

primer:RNA template
R-HSA-180634 (Reactome)
Ran GTPase:GDPArrowR-HSA-165055 (Reactome)
Ran-GDPR-HSA-180687 (Reactome)
Ran-GTPArrowR-HSA-180687 (Reactome)
Ran-GTPR-HSA-165034 (Reactome)
Ran-GTPR-HSA-180728 (Reactome)
Ran:GTPArrowR-HSA-165028 (Reactome)
Ran:GTPR-HSA-165055 (Reactome)
RanBP1:Ran-GTP:CRM1:Rev-bound mRNA complexArrowR-HSA-180739 (Reactome)
RanBP1:Ran-GTP:CRM1:Rev-bound mRNA complexR-HSA-165028 (Reactome)
Rev

multimer-bound HIV-1

mRNA:Crm1:Ran:GTP:NPC
ArrowR-HSA-165043 (Reactome)
Rev

multimer-bound HIV-1

mRNA:Crm1:Ran:GTP:NPC
R-HSA-165047 (Reactome)
Rev multimer-bound

HIV-1

mRNA:Crm1:Ran:GTP
ArrowR-HSA-165034 (Reactome)
Rev multimer-bound

HIV-1

mRNA:Crm1:Ran:GTP
ArrowR-HSA-165047 (Reactome)
Rev multimer-bound

HIV-1

mRNA:Crm1:Ran:GTP
R-HSA-165043 (Reactome)
Rev multimer-bound

HIV-1

mRNA:Crm1:Ran:GTP
R-HSA-180739 (Reactome)
Rev multimer-bound

HIV-1

mRNA:Crm1:Ran:GTP
mim-catalysisR-HSA-165055 (Reactome)
Rev multimer-bound

HIV-1 mRNA:CRM1

complex
ArrowR-HSA-180885 (Reactome)
Rev multimer-bound

HIV-1 mRNA:CRM1

complex
R-HSA-165034 (Reactome)
Rev multimer-bound HIV-1 mRNAArrowR-HSA-165033 (Reactome)
Rev multimer-bound HIV-1 mRNAR-HSA-180885 (Reactome)
Rev-bound HIV-1 mRNAArrowR-HSA-165027 (Reactome)
Rev-bound HIV-1 mRNAR-HSA-165033 (Reactome)
Rev-multimerArrowR-HSA-165028 (Reactome)
Rev-multimerArrowR-HSA-180736 (Reactome)
Rev-multimerR-HSA-165033 (Reactome)
Rev-multimerR-HSA-180709 (Reactome)
Rev:Importin-beta:B23ArrowR-HSA-180732 (Reactome)
Rev:Importin-beta:B23R-HSA-180728 (Reactome)
Rev:Importin-beta:NPM1ArrowR-HSA-180725 (Reactome)
Rev:Importin-beta:NPM1R-HSA-180710 (Reactome)
Rev:importin-beta:B23:Ran-GTP complexArrowR-HSA-180728 (Reactome)
Rev:importin-beta:B23:Ran-GTP complexR-HSA-180736 (Reactome)
SKP1R-HSA-180599 (Reactome)
Tat (P04608)R-HSA-167234 (Reactome)
Tat:P-TEFb(Cyclin T1:Cdk9) complexArrowR-HSA-167234 (Reactome)
UbArrowR-HSA-180573 (Reactome)
UbArrowR-HSA-180603 (Reactome)
UbR-HSA-180540 (Reactome)
UbR-HSA-180597 (Reactome)
VIF (P69723) proteinR-HSA-180602 (Reactome)
VPRArrowR-HSA-180855 (Reactome)
VPRR-HSA-180855 (Reactome)
VPRR-HSA-180905 (Reactome)
VPU (P05919)R-HSA-180606 (Reactome)
Vif:APOBEC3G complexArrowR-HSA-180602 (Reactome)
Vif:APOBEC3G complexR-HSA-180555 (Reactome)
Vif:APOBEC3G complexTBarR-HSA-180630 (Reactome)
Vif:Cul5:SCF complexArrowR-HSA-180603 (Reactome)
Vpr:importin-alpha complexArrowR-HSA-180627 (Reactome)
Vpu:beta-TrCP1:Skp1 complexArrowR-HSA-180573 (Reactome)
XPO1ArrowR-HSA-165028 (Reactome)
XPO1R-HSA-180885 (Reactome)
class I MHC complexR-HSA-182243 (Reactome)
multi-ubiquitinated APOBEC3G:Vif:Cul5:SCF complexArrowR-HSA-180540 (Reactome)
multi-ubiquitinated APOBEC3G:Vif:Cul5:SCF complexR-HSA-180603 (Reactome)
multiubiquitinated CD4:Vpu:beta-TrCP_1:Skp1 complexArrowR-HSA-180597 (Reactome)
multiubiquitinated CD4:Vpu:beta-TrCP_1:Skp1 complexR-HSA-180573 (Reactome)
myristoylated nefArrowR-HSA-167601 (Reactome)
myristoylated nefArrowR-HSA-182171 (Reactome)
myristoylated nefArrowR-HSA-182263 (Reactome)
myristoylated nefR-HSA-164943 (Reactome)
myristoylated nefR-HSA-167566 (Reactome)
myristoylated nefR-HSA-167630 (Reactome)
myristoylated nefR-HSA-182243 (Reactome)
myristoylated nefR-HSA-200858 (Reactome)
myristoylated nefR-HSA-200879 (Reactome)
myristoylated nefR-HSA-200908 (Reactome)
myristoylated nefR-HSA-200952 (Reactome)
myristoylated nefR-HSA-200954 (Reactome)
nucleoporin-associated Rev:Importin-beta:B23 complexArrowR-HSA-180710 (Reactome)
nucleoporin-associated Rev:Importin-beta:B23 complexR-HSA-180732 (Reactome)
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