trans-Golgi Network Vesicle Budding (Homo sapiens)

From WikiPathways

Revision as of 13:49, 16 August 2017 by ReactomeTeam (Talk | contribs)
Jump to: navigation, search
314, 10, 12, 20, 2627, 285, 9, 235, 87, 11, 19, 305, 14, 275, 8561-3, 16, 225, 9, 235, 13, 15, 27, 2924275, 13, 15, 27, 2917, 2118, 25165, 14, 27endosome lumenlysosomal lumenGolgi lumensecretory granule membranecytosolcytoplasmic vesicle membraneVAMP7 AP3B1 BLOC1S1 TGOLN2 DNM2HIP1R AP4E1 PICALM AP4B1 VAMP7 VAMP7 DTNBP1GNS SORT1 VAMP8 HIP1R BLOC1S1 CHMP2A DNASE2 AP1M1 BLOC1S1 RAB5C AP3B1 CLTC-1 TXNDC5 OCRL GNS AP1S1 VampAP1B1 PiCLTC-1 ADPAP1S2 TXNDC5 APP(18-770) GNS HGSSH3GL2RAB5C AP1S2 GTPAP3B1 AP4B1 AP1S3 AP1G1 AP1S2 IGF2R AP1S2 CTSZ TFRC(1-760) AP1G1 IGF2R VAMP2 Ferritin ComplexAP3S1 AP1M2 Clathrin light chain AP1M2 STX4 DNAJC6 IGF2R VAMP8 CLTC-1 GDP NECAP1 AP1S3 AP4S1 SNX2 SNAP23 ARF1 TGOLN2 SNAP23 ARRB1 AP1G2 CLTC VAMP2SNAPIN TBC1D8B VAMP8 TXNDC5AP1S1 ARRB1AP1S3 Arf1-GTPAP1S1 AP1S3 AP1M2 CLTC-1 AP1B1 HGS FTH1 Clathrin light chain AP1G1 PIK3C2A TPD52L1 DTNBP1 Arf1-GDPAP1S1 CLAT:AP1:CLVSSNAPIN HSPA8 GTP AP1B1 ARF1 IGF2R GAK NAPAAP1B1 DNASE2 AP1G1 AP1S1 SNAP23CLTA AP4S1 FTL PUM1AP1S3 CLTC-1 Arf1-GDPAPP(18-770)ARRB1BLOC1S6VAMP8 VAMP2 TGOLN2 VAMP2 Cargo:AP-1:Beta-arrestin:Vamp:Clathrin Triskelion:Dynamin:Endophilin ComplexTFRC(1-760) GBF1GAK AP1B1 AP1G1 AP1B1 ATPBLOC1S1 AP1M1 BLOC1S1 GNS ARRB1 SNX9 VAMP8Clathrin light chain VAMP8 GOLGB1 VAMP2 AP1G1 TPD52 AP-1 ComplexAP1S2 Clathrin TriskelionHIP1R GDPSNX2 Vamp7:SNAP23:Syn4Plasma membranevesicle docking andfusion complexSNAPIN AP1B1 VAMP7 HIP1R Lysosome CargoClathrin TriskelionDNASE2 Golgi-associatedVesicle DestinedCargoAP4E1 TXNDC5 CLTA ATPAP4B1 VAMP7 SNX2 DNM2CHMP2AVAMP2 CTSZ CPD AP4:APPHSC70:AuxillinComplexCLINT1AP4E1 YIPF6 AP1G2:HGS:CHMP2AAP1S2 TPD52L1 BLOC1S3SNAP23AP4M1 AP4E1 BLOC1S3 PiAP1S2 BLOC-1 ComplexAP1S3 AP3B1 VAMP7 OCRL AP4B1 AP1S2 AP1S2 AP1S2 PICALM Golgi-associatedVesicle DestinedCargoARF1 OCRL ARRB1 GOLGB1 BLOC1S4 CLINT1 VAMP2 GNS AP4B1 CPD LysosomeCargo:AP-1:Beta-arrestin:Clathrin Triskelion:Vamp ComplexCLVS2 AP1S2 HIP1R PiSNX5 VAMP8 AP1B1 SNX5 Arf1-GDPVampLysosome DestinedCargoSNX9 GDPAP3S1 AP1G1 CPD SNAP23 PIK3C2A FTL BLOC1S1 PIK3C2A CLTC-1 SNX2 AP4:APPFTH1 VAMP7 SH3D19CTSZ GTP SNX5 GDP M6PR ARF1 ACBD3 Cargo:AP-1:Arf1-GTP:beta-Arrestin-1:Vamp ComplexCLVS2 Ferritin ComplexAPP(18-770) YIPF6 AP3S1 GOLGB1 homodimerSNAPIN TXNDC5 CLTB VAMP8 PI(3,5)P2 AP1S3 STX4 SORT1 AP4M1 GAK M6PR Golgi-associatedVesicle CargoGolgi-associatedVesicle CargoSTX4RAB5C CLVS1 AP1M2 GAK YIPF6 Vamp8:SNAP23:Syn4Secretory granuledocking and fusioncomplexAP4M1 AP1S1 TPD52 HSPA8 AP1M1 Clathrin light chain AP1S1 AP1M2 LysosomeDestinedCargo:AP-1:Beta-arrestin:Vamp:Clathrin Triskelion:Dynamin:Endophilin ComplexSH3GL2 AP1S3 AP1M1 TFRC(1-760) GTPArf1-GTPAP1S3 TPD52 DNASE2 HSC70:AuxillinComplexPIK3C2A STX4VampADPAP4PiCargo:AP-1:Beta-arrestin:Clathrin Triskelion:Vamp ComplexOCRL VAMP8 NECAP1 AP-1 ComplexVAMP7 DNM2 VAMP7 SNAPIN TBC1D8B DNAJC6 PICALM AP1B1 BLOC1S1CTSZ AP1M1 PiSNX9 AP1M2 ARF1 VAMP7TPD52L1 VAMP7YIPF6 TFRC(1-760) RAB5C ARF1 SH3D19PICALM SH3GL2CLTC-1 GAK AP4E1 CLAT:AP1:CLVS:PI(3,5)P2Vamp2:SNAP23:Syn4Secretory granuledocking and fusioncomplexSORT1 BLOC1S6 AP1M2 AP1S1 DNASE2 AP1B1 AP4E1 AP1B1 VAMP2 AP1G1 AP1S1 VAMP2 VAMP2 SORT1 SORT1 CTSZ AP1G1 AP-1 ComplexAP1G2DNM2 TPD52 AP1M1 TFRC(1-760) AP4E1 BLOC1S4AP1M1 PIK3C2A RAB5C SNX2 ARRB1TGOLN2 ARRB1 VAMP7 NECAP1 IGF2R TPD52L1 CPD Lysosome DestinedCargoTPD52L1 TGOLN2 AP1M2 AP1M2 AP4B1 Golgi-associatedvesicle interactingproteinsAP1M1 ARRB1 AP1M1 GTP FTL ACBD3:GOLGB1 dimerSNX9 AP3S1 STX4 M6PR ACBD3VAMP8M6PR CLINT1Clathrin light chain Clathrin light chain AP1M2 PUM1AP1S1 AP1S3 Clathrin light chain AP4B1 TXNDC5 CLTC AP1M1 VAMP2 AP1G1 LysosomeDestinedCargo:AP-1:Arf1-GTP:beta-Arrestin-1:Vamp ComplexNECAP1 SNAP23NAPA AP3B1 AP4B1 PICALM AP4E1 PI(3,5)P2OCRL AP4S1 NECAP1 PUM1 VAMP8 TXNDC5 GDP YIPF6 ARRB1 TBC1D8B SNX5 SNX9 AP1M1 GTP VAMP8 TPD52 ARF1 TBC1D8B CLTB TBC1D8B Lysosome CargoCPD M6PR Clathrin TriskelionAP1S3 SH3GL2 AP1M2 AP1S1 AP1G1 CLVS1 AP3S1 FTH1 SH3D19 VAMP2GDPGTPSNX5


Description

After passing through the Golgi complex, secretory cargo is packaged into post-Golgi transport intermediates (post-Golgi), which translocate plus-end directed along microtubules to the plasma membrane. View original pathway at:Reactome.

Comments

Reactome-Converter 
Pathway is converted from Reactome ID: 199992
Reactome-version 
Reactome version: 61
Reactome Author 
Reactome Author: Gillespie, Marc E

Try the New WikiPathways

View approved pathways at the new wikipathways.org.

Quality Tags

Ontology Terms

 

Bibliography

View all...
  1. Sohda M, Misumi Y, Yamamoto A, Yano A, Nakamura N, Ikehara Y.; ''Identification and characterization of a novel Golgi protein, GCP60, that interacts with the integral membrane protein giantin.''; PubMed Europe PMC Scholia
  2. Suzuki K, Verma IM.; ''Phosphorylation of SNAP-23 by IkappaB kinase 2 regulates mast cell degranulation.''; PubMed Europe PMC Scholia
  3. Puri N, Roche PA.; ''Ternary SNARE complexes are enriched in lipid rafts during mast cell exocytosis.''; PubMed Europe PMC Scholia
  4. Hirst J, Bright NA, Rous B, Robinson MS.; ''Characterization of a fourth adaptor-related protein complex.''; PubMed Europe PMC Scholia
  5. Zhu Y, Traub LM, Kornfeld S.; ''ADP-ribosylation factor 1 transiently activates high-affinity adaptor protein complex AP-1 binding sites on Golgi membranes.''; PubMed Europe PMC Scholia
  6. Ungewickell E, Ungewickell H, Holstein SE, Lindner R, Prasad K, Barouch W, Martin B, Greene LE, Eisenberg E.; ''Role of auxilin in uncoating clathrin-coated vesicles.''; PubMed Europe PMC Scholia
  7. Musacchio A, Smith CJ, Roseman AM, Harrison SC, Kirchhausen T, Pearse BM.; ''Functional organization of clathrin in coats: combining electron cryomicroscopy and X-ray crystallography.''; PubMed Europe PMC Scholia
  8. Takatsu H, Sakurai M, Shin HW, Murakami K, Nakayama K.; ''Identification and characterization of novel clathrin adaptor-related proteins.''; PubMed Europe PMC Scholia
  9. Bryant NJ, Govers R, James DE.; ''Regulated transport of the glucose transporter GLUT4.''; PubMed Europe PMC Scholia
  10. Antonin W, Holroyd C, Fasshauer D, Pabst S, Von Mollard GF, Jahn R.; ''A SNARE complex mediating fusion of late endosomes defines conserved properties of SNARE structure and function.''; PubMed Europe PMC Scholia
  11. Starcevic M, Dell'Angelica EC.; ''Identification of snapin and three novel proteins (BLOS1, BLOS2, and BLOS3/reduced pigmentation) as subunits of biogenesis of lysosome-related organelles complex-1 (BLOC-1).''; PubMed Europe PMC Scholia
  12. Wesolowski J, Paumet F.; ''Escherichia coli exposure inhibits exocytic SNARE-mediated membrane fusion in mast cells.''; PubMed Europe PMC Scholia
  13. Lee DW, Zhao X, Zhang F, Eisenberg E, Greene LE.; ''Depletion of GAK/auxilin 2 inhibits receptor-mediated endocytosis and recruitment of both clathrin and clathrin adaptors.''; PubMed Europe PMC Scholia
  14. Hartmann-Stühler C, Prange R.; ''Hepatitis B virus large envelope protein interacts with gamma2-adaptin, a clathrin adaptor-related protein.''; PubMed Europe PMC Scholia
  15. Acton SL, Wong DH, Parham P, Brodsky FM, Jackson AP.; ''Alteration of clathrin light chain expression by transfection and gene disruption.''; PubMed Europe PMC Scholia
  16. Salinas E, Quintanar-Stephano A, Córdova LE, Ouintanar JL.; ''Allergen-sensitization increases mast-cell expression of the exocytotic proteins SNAP-23 and syntaxin 4, which are involved in histamine secretion.''; PubMed Europe PMC Scholia
  17. Rost M, Mann S, Lambert C, Döring T, Thomé N, Prange R.; ''Gamma-adaptin, a novel ubiquitin-interacting adaptor, and Nedd4 ubiquitin ligase control hepatitis B virus maturation.''; PubMed Europe PMC Scholia
  18. Katoh Y, Ritter B, Gaffry T, Blondeau F, Höning S, McPherson PS.; ''The clavesin family, neuron-specific lipid- and clathrin-binding Sec14 proteins regulating lysosomal morphology.''; PubMed Europe PMC Scholia
  19. Döring T, Gotthardt K, Stieler J, Prange R.; ''γ2-Adaptin is functioning in the late endosomal sorting pathway and interacts with ESCRT-I and -III subunits.''; PubMed Europe PMC Scholia
  20. Borner GH, Harbour M, Hester S, Lilley KS, Robinson MS.; ''Comparative proteomics of clathrin-coated vesicles.''; PubMed Europe PMC Scholia
  21. Seaman MN, Sowerby PJ, Robinson MS.; ''Cytosolic and membrane-associated proteins involved in the recruitment of AP-1 adaptors onto the trans-Golgi network.''; PubMed Europe PMC Scholia
  22. Burgos PV, Mardones GA, Rojas AL, daSilva LL, Prabhu Y, Hurley JH, Bonifacino JS.; ''Sorting of the Alzheimer's disease amyloid precursor protein mediated by the AP-4 complex.''; PubMed Europe PMC Scholia
  23. Maier O, Knoblich M, Westermann P.; ''Dynamin II binds to the trans-Golgi network.''; PubMed Europe PMC Scholia
  24. Verkerk AJ, Schot R, Dumee B, Schellekens K, Swagemakers S, Bertoli-Avella AM, Lequin MH, Dudink J, Govaert P, van Zwol AL, Hirst J, Wessels MW, Catsman-Berrevoets C, Verheijen FW, de Graaff E, de Coo IF, Kros JM, Willemsen R, Willems PJ, van der Spek PJ, Mancini GM.; ''Mutation in the AP4M1 gene provides a model for neuroaxonal injury in cerebral palsy.''; PubMed Europe PMC Scholia
  25. Kirchhausen T.; ''Three ways to make a vesicle.''; PubMed Europe PMC Scholia
  26. Aguilar RC, Boehm M, Gorshkova I, Crouch RJ, Tomita K, Saito T, Ohno H, Bonifacino JS.; ''Signal-binding specificity of the mu4 subunit of the adaptor protein complex AP-4.''; PubMed Europe PMC Scholia
  27. Hirst J, Lindsay MR, Robinson MS.; ''GGAs: roles of the different domains and comparison with AP-1 and clathrin.''; PubMed Europe PMC Scholia
  28. Farsad K, Ringstad N, Takei K, Floyd SR, Rose K, De Camilli P.; ''Generation of high curvature membranes mediated by direct endophilin bilayer interactions.''; PubMed Europe PMC Scholia
  29. Abou Jamra R, Philippe O, Raas-Rothschild A, Eck SH, Graf E, Buchert R, Borck G, Ekici A, Brockschmidt FF, Nöthen MM, Munnich A, Strom TM, Reis A, Colleaux L.; ''Adaptor protein complex 4 deficiency causes severe autosomal-recessive intellectual disability, progressive spastic paraplegia, shy character, and short stature.''; PubMed Europe PMC Scholia
  30. Rao SK, Huynh C, Proux-Gillardeaux V, Galli T, Andrews NW.; ''Identification of SNAREs involved in synaptotagmin VII-regulated lysosomal exocytosis.''; PubMed Europe PMC Scholia
  31. Guo Z, Turner C, Castle D.; ''Relocation of the t-SNARE SNAP-23 from lamellipodia-like cell surface projections regulates compound exocytosis in mast cells.''; PubMed Europe PMC Scholia

History

View all...
CompareRevisionActionTimeUserComment
114946view16:46, 25 January 2021ReactomeTeamReactome version 75
113390view11:46, 2 November 2020ReactomeTeamReactome version 74
112595view15:57, 9 October 2020ReactomeTeamReactome version 73
101511view11:37, 1 November 2018ReactomeTeamreactome version 66
101047view21:19, 31 October 2018ReactomeTeamreactome version 65
100578view19:52, 31 October 2018ReactomeTeamreactome version 64
100127view16:37, 31 October 2018ReactomeTeamreactome version 63
99677view15:07, 31 October 2018ReactomeTeamreactome version 62 (2nd attempt)
99270view12:45, 31 October 2018ReactomeTeamreactome version 62
93989view13:49, 16 August 2017ReactomeTeamreactome version 61
93594view11:28, 9 August 2017ReactomeTeamreactome version 61
88363view16:41, 1 August 2016FehrhartOntology Term : 'pathway pertinent to protein folding, sorting, modification, translocation and degradation' added !
86701view09:24, 11 July 2016ReactomeTeamreactome version 56
83468view12:32, 18 November 2015ReactomeTeamNew pathway

External references

DataNodes

View all...
NameTypeDatabase referenceComment
ACBD3 ProteinQ9H3P7 (Uniprot-TrEMBL)
ACBD3:GOLGB1 dimerComplexR-HSA-8874975 (Reactome)
ACBD3ProteinQ9H3P7 (Uniprot-TrEMBL)
ADPMetaboliteCHEBI:16761 (ChEBI)
AP-1 ComplexComplexR-HSA-167717 (Reactome)
AP1B1 ProteinQ10567 (Uniprot-TrEMBL)
AP1G1 ProteinO43747 (Uniprot-TrEMBL)
AP1G2 ProteinO75843 (Uniprot-TrEMBL)
AP1G2:HGS:CHMP2AComplexR-HSA-5671700 (Reactome)
AP1G2ProteinO75843 (Uniprot-TrEMBL)
AP1M1 ProteinQ9BXS5 (Uniprot-TrEMBL)
AP1M2 ProteinQ9Y6Q5 (Uniprot-TrEMBL)
AP1S1 ProteinP61966 (Uniprot-TrEMBL)
AP1S2 ProteinP56377 (Uniprot-TrEMBL)
AP1S3 ProteinQ96PC3 (Uniprot-TrEMBL)
AP3B1 ProteinO00203 (Uniprot-TrEMBL)
AP3S1 ProteinQ92572 (Uniprot-TrEMBL)
AP4:APPComplexR-HSA-5229081 (Reactome)
AP4:APPComplexR-HSA-5229085 (Reactome)
AP4B1 ProteinQ9Y6B7 (Uniprot-TrEMBL)
AP4E1 ProteinQ9UPM8 (Uniprot-TrEMBL)
AP4M1 ProteinO00189 (Uniprot-TrEMBL)
AP4ComplexR-HSA-5229123 (Reactome)
AP4S1 ProteinQ9Y587 (Uniprot-TrEMBL)
APP(18-770) ProteinP05067 (Uniprot-TrEMBL)
APP(18-770)ProteinP05067 (Uniprot-TrEMBL)
ARF1 ProteinP84077 (Uniprot-TrEMBL)
ARRB1 ProteinP49407 (Uniprot-TrEMBL)
ARRB1ProteinP49407 (Uniprot-TrEMBL)
ATPMetaboliteCHEBI:15422 (ChEBI)
Arf1-GDPComplexR-HSA-201340 (Reactome)
Arf1-GTPComplexR-HSA-199981 (Reactome)
BLOC-1 ComplexComplexR-HSA-429825 (Reactome)
BLOC1S1 ProteinP78537 (Uniprot-TrEMBL)
BLOC1S1ProteinP78537 (Uniprot-TrEMBL)
BLOC1S3 ProteinQ6QNY0 (Uniprot-TrEMBL)
BLOC1S3ProteinQ6QNY0 (Uniprot-TrEMBL)
BLOC1S4 ProteinQ9NUP1 (Uniprot-TrEMBL)
BLOC1S4ProteinQ9NUP1 (Uniprot-TrEMBL)
BLOC1S6 ProteinQ9UL45 (Uniprot-TrEMBL)
BLOC1S6ProteinQ9UL45 (Uniprot-TrEMBL)
CHMP2A ProteinO43633 (Uniprot-TrEMBL)
CHMP2AProteinO43633 (Uniprot-TrEMBL)
CLAT:AP1:CLVS:PI(3,5)P2ComplexR-HSA-5334658 (Reactome)
CLAT:AP1:CLVSComplexR-HSA-5333673 (Reactome)
CLINT1 ProteinQ14677 (Uniprot-TrEMBL)
CLINT1ProteinQ14677 (Uniprot-TrEMBL)
CLTA ProteinP09496 (Uniprot-TrEMBL)
CLTB ProteinP09497 (Uniprot-TrEMBL)
CLTC ProteinQ00610 (Uniprot-TrEMBL)
CLTC-1 ProteinQ00610-1 (Uniprot-TrEMBL)
CLVS1 ProteinQ8IUQ0 (Uniprot-TrEMBL)
CLVS2 ProteinQ5SYC1 (Uniprot-TrEMBL)
CPD ProteinO75976 (Uniprot-TrEMBL)
CTSZ ProteinQ9UBR2 (Uniprot-TrEMBL)
Cargo:AP-1:Arf1-GTP:beta-Arrestin-1:Vamp ComplexComplexR-HSA-432669 (Reactome)
Cargo:AP-1:Beta-arrestin:Clathrin Triskelion:Vamp ComplexComplexR-HSA-351198 (Reactome)
Cargo:AP-1:Beta-arrestin:Vamp:Clathrin Triskelion:Dynamin:Endophilin ComplexComplexR-HSA-350825 (Reactome)
Clathrin TriskelionComplexR-HSA-350827 (Reactome)
Clathrin light chain ProteinP09496-1 (Uniprot-TrEMBL)
DNAJC6 ProteinO75061 (Uniprot-TrEMBL)
DNASE2 ProteinO00115 (Uniprot-TrEMBL)
DNM2 ProteinP50570 (Uniprot-TrEMBL)
DNM2ProteinP50570 (Uniprot-TrEMBL)
DTNBP1 ProteinQ96EV8 (Uniprot-TrEMBL)
DTNBP1ProteinQ96EV8 (Uniprot-TrEMBL)
FTH1 ProteinP02794 (Uniprot-TrEMBL)
FTL ProteinP02792 (Uniprot-TrEMBL)
Ferritin ComplexComplexR-HSA-434350 (Reactome) The ferritin complex is an oligomer of 24 subunits with light and heavy chains. The structural features of ferritin arise from the combination in various ratios of two subunits, H and L, which differ in size, amino acid composition, surface charge, and immunoreactivity. A corollary related differences in ferritin iron content to the functional efficiency of one of the two subunits for storing iron. In humans the H subunit is associated with a lower pI and lower iron content, and predominates in heart tissue, whereas the L subunit is associated with a higher pI and higher iron content, and predominates in the liver.
The functional molecule forms a roughly spherical shell with a diameter of 12 nm and contains a central cavity into which the insoluble mineral iron core is deposited. Iron metabolism provides a useful example of gene expression translational control. Increased iron levels stimulate the synthesis of the iron-binding protein, ferritin, without any corresponding increase in the amount of ferritin mRNA. The 5'-UTR of both ferritin heavy chain mRNA and light chain mRNA contain a single iron-response element (IRE), a specific cis-acting regulatory sequence which forms a hairpin structure.
GAK ProteinO14976 (Uniprot-TrEMBL)
GBF1ProteinQ92538 (Uniprot-TrEMBL)
GDP MetaboliteCHEBI:17552 (ChEBI)
GDPMetaboliteCHEBI:17552 (ChEBI)
GNS ProteinP15586 (Uniprot-TrEMBL)
GOLGB1 ProteinQ14789 (Uniprot-TrEMBL)
GOLGB1 homodimerComplexR-HSA-6810505 (Reactome)
GTP MetaboliteCHEBI:15996 (ChEBI)
GTPMetaboliteCHEBI:15996 (ChEBI)
Golgi-associated Vesicle CargoComplexR-HSA-432672 (Reactome)
Golgi-associated Vesicle CargoComplexR-HSA-435029 (Reactome)
Golgi-associated

Vesicle Destined

Cargo
ComplexR-HSA-432674 (Reactome)
Golgi-associated

Vesicle Destined

Cargo
ComplexR-HSA-435032 (Reactome)
Golgi-associated

vesicle interacting

proteins
ComplexR-HSA-434351 (Reactome)
HGS ProteinO14964 (Uniprot-TrEMBL)
HGSProteinO14964 (Uniprot-TrEMBL)
HIP1R ProteinO75146 (Uniprot-TrEMBL)
HSC70:Auxillin ComplexComplexR-HSA-351175 (Reactome)
HSPA8 ProteinP11142 (Uniprot-TrEMBL)
IGF2R ProteinP11717 (Uniprot-TrEMBL)
Lysosome Cargo:AP-1:Beta-arrestin:Clathrin Triskelion:Vamp ComplexComplexR-HSA-432691 (Reactome)
Lysosome

Destined

Cargo:AP-1:Arf1-GTP:beta-Arrestin-1:Vamp Complex
ComplexR-HSA-432700 (Reactome)
Lysosome

Destined

Cargo:AP-1:Beta-arrestin:Vamp:Clathrin Triskelion:Dynamin:Endophilin Complex
ComplexR-HSA-432704 (Reactome)
Lysosome CargoComplexR-HSA-432697 (Reactome)
Lysosome CargoComplexR-HSA-435030 (Reactome)
Lysosome Destined CargoComplexR-HSA-432690 (Reactome)
Lysosome Destined CargoComplexR-HSA-435031 (Reactome)
M6PR ProteinP20645 (Uniprot-TrEMBL)
NAPA ProteinP54920 (Uniprot-TrEMBL)
NAPAProteinP54920 (Uniprot-TrEMBL)
NECAP1 ProteinQ8NC96 (Uniprot-TrEMBL)
OCRL ProteinQ01968 (Uniprot-TrEMBL)
PI(3,5)P2 MetaboliteCHEBI:16851 (ChEBI)
PI(3,5)P2MetaboliteCHEBI:16851 (ChEBI)
PICALM ProteinQ13492 (Uniprot-TrEMBL)
PIK3C2A ProteinO00443 (Uniprot-TrEMBL)
PUM1 ProteinQ14671 (Uniprot-TrEMBL)
PUM1ProteinQ14671 (Uniprot-TrEMBL)
PiMetaboliteCHEBI:18367 (ChEBI)
RAB5C ProteinP51148 (Uniprot-TrEMBL)
SH3D19 ProteinQ5HYK7 (Uniprot-TrEMBL)
SH3D19ProteinQ5HYK7 (Uniprot-TrEMBL)
SH3GL2 ProteinQ99962 (Uniprot-TrEMBL)
SH3GL2ProteinQ99962 (Uniprot-TrEMBL)
SNAP23 ProteinO00161 (Uniprot-TrEMBL)
SNAP23ProteinO00161 (Uniprot-TrEMBL)
SNAPIN ProteinO95295 (Uniprot-TrEMBL)
SNX2 ProteinO60749 (Uniprot-TrEMBL)
SNX5 ProteinQ9Y5X3 (Uniprot-TrEMBL)
SNX9 ProteinQ9Y5X1 (Uniprot-TrEMBL)
SORT1 ProteinQ99523 (Uniprot-TrEMBL)
STX4 ProteinQ12846 (Uniprot-TrEMBL)
STX4ProteinQ12846 (Uniprot-TrEMBL)
TBC1D8B ProteinQ0IIM8 (Uniprot-TrEMBL)
TFRC(1-760) ProteinP02786 (Uniprot-TrEMBL)
TGOLN2 ProteinO43493 (Uniprot-TrEMBL)
TPD52 ProteinP55327 (Uniprot-TrEMBL)
TPD52L1 ProteinQ16890 (Uniprot-TrEMBL)
TXNDC5 ProteinQ8NBS9 (Uniprot-TrEMBL)
TXNDC5ProteinQ8NBS9 (Uniprot-TrEMBL)
VAMP2 ProteinP63027 (Uniprot-TrEMBL)
VAMP2ProteinP63027 (Uniprot-TrEMBL)
VAMP7 ProteinP51809 (Uniprot-TrEMBL)
VAMP7ProteinP51809 (Uniprot-TrEMBL)
VAMP8 ProteinQ9BV40 (Uniprot-TrEMBL)
VAMP8ProteinQ9BV40 (Uniprot-TrEMBL)
Vamp2:SNAP23:Syn4

Secretory granule docking and fusion

complex
ComplexR-HSA-376372 (Reactome)
Vamp7:SNAP23:Syn4

Plasma membrane vesicle docking and

fusion complex
ComplexR-HSA-376340 (Reactome)
Vamp8:SNAP23:Syn4

Secretory granule docking and fusion

complex
ComplexR-HSA-376367 (Reactome)
VampComplexR-HSA-432668 (Reactome)
VampComplexR-HSA-432673 (Reactome)
VampComplexR-HSA-432694 (Reactome)
YIPF6 ProteinQ96EC8 (Uniprot-TrEMBL)

Annotated Interactions

View all...
SourceTargetTypeDatabase referenceComment
ACBD3:GOLGB1 dimerArrowR-HSA-8874979 (Reactome)
ACBD3R-HSA-8874979 (Reactome)
ADPArrowR-HSA-421836 (Reactome)
ADPArrowR-HSA-432688 (Reactome)
AP-1 ComplexArrowR-HSA-421836 (Reactome)
AP-1 ComplexArrowR-HSA-432688 (Reactome)
AP-1 ComplexR-HSA-421833 (Reactome)
AP-1 ComplexR-HSA-432712 (Reactome)
AP1G2:HGS:CHMP2AArrowR-HSA-5671702 (Reactome)
AP1G2R-HSA-5671702 (Reactome)
AP4:APPArrowR-HSA-5229111 (Reactome)
AP4:APPArrowR-HSA-5229132 (Reactome)
AP4:APPR-HSA-5229111 (Reactome)
AP4:APPmim-catalysisR-HSA-5229111 (Reactome)
AP4R-HSA-5229132 (Reactome)
APP(18-770)R-HSA-5229132 (Reactome)
ARRB1ArrowR-HSA-421836 (Reactome)
ARRB1ArrowR-HSA-432688 (Reactome)
ARRB1R-HSA-421833 (Reactome)
ARRB1R-HSA-432712 (Reactome)
ATPR-HSA-421836 (Reactome)
ATPR-HSA-432688 (Reactome)
Arf1-GDPArrowR-HSA-421831 (Reactome)
Arf1-GDPArrowR-HSA-432706 (Reactome)
Arf1-GDPR-HSA-350769 (Reactome)
Arf1-GTPArrowR-HSA-350769 (Reactome)
Arf1-GTPR-HSA-421833 (Reactome)
Arf1-GTPR-HSA-432712 (Reactome)
BLOC-1 ComplexArrowR-HSA-429815 (Reactome)
BLOC1S1R-HSA-429815 (Reactome)
BLOC1S3R-HSA-429815 (Reactome)
BLOC1S4R-HSA-429815 (Reactome)
BLOC1S6R-HSA-429815 (Reactome)
CHMP2AR-HSA-5671702 (Reactome)
CLAT:AP1:CLVS:PI(3,5)P2ArrowR-HSA-5333658 (Reactome)
CLAT:AP1:CLVSR-HSA-5333658 (Reactome)
CLINT1R-HSA-434362 (Reactome)
Cargo:AP-1:Arf1-GTP:beta-Arrestin-1:Vamp ComplexArrowR-HSA-421833 (Reactome)
Cargo:AP-1:Arf1-GTP:beta-Arrestin-1:Vamp ComplexR-HSA-421831 (Reactome)
Cargo:AP-1:Beta-arrestin:Clathrin Triskelion:Vamp ComplexArrowR-HSA-421835 (Reactome)
Cargo:AP-1:Beta-arrestin:Clathrin Triskelion:Vamp ComplexR-HSA-421836 (Reactome)
Cargo:AP-1:Beta-arrestin:Vamp:Clathrin Triskelion:Dynamin:Endophilin ComplexArrowR-HSA-421831 (Reactome)
Cargo:AP-1:Beta-arrestin:Vamp:Clathrin Triskelion:Dynamin:Endophilin ComplexR-HSA-421835 (Reactome)
Cargo:AP-1:Beta-arrestin:Vamp:Clathrin Triskelion:Dynamin:Endophilin Complexmim-catalysisR-HSA-421835 (Reactome)
Clathrin TriskelionArrowR-HSA-421836 (Reactome)
Clathrin TriskelionArrowR-HSA-432688 (Reactome)
Clathrin TriskelionR-HSA-421831 (Reactome)
Clathrin TriskelionR-HSA-432706 (Reactome)
DNM2ArrowR-HSA-421835 (Reactome)
DNM2ArrowR-HSA-432707 (Reactome)
DNM2R-HSA-421831 (Reactome)
DNM2R-HSA-432706 (Reactome)
DTNBP1R-HSA-429815 (Reactome)
Ferritin ComplexR-HSA-434362 (Reactome)
GBF1mim-catalysisR-HSA-350769 (Reactome)
GDPArrowR-HSA-350769 (Reactome)
GDPArrowR-HSA-421835 (Reactome)
GDPArrowR-HSA-432707 (Reactome)
GOLGB1 homodimerR-HSA-8874979 (Reactome)
GTPR-HSA-350769 (Reactome)
GTPR-HSA-421835 (Reactome)
GTPR-HSA-432707 (Reactome)
Golgi-associated Vesicle CargoArrowR-HSA-421836 (Reactome)
Golgi-associated

Vesicle Destined

Cargo
R-HSA-421833 (Reactome)
Golgi-associated

vesicle interacting

proteins
ArrowR-HSA-434362 (Reactome)
HGSR-HSA-5671702 (Reactome)
HSC70:Auxillin ComplexArrowR-HSA-421836 (Reactome)
HSC70:Auxillin ComplexArrowR-HSA-432688 (Reactome)
HSC70:Auxillin ComplexR-HSA-421836 (Reactome)
HSC70:Auxillin ComplexR-HSA-432688 (Reactome)
Lysosome Cargo:AP-1:Beta-arrestin:Clathrin Triskelion:Vamp ComplexArrowR-HSA-432707 (Reactome)
Lysosome Cargo:AP-1:Beta-arrestin:Clathrin Triskelion:Vamp ComplexR-HSA-432688 (Reactome)
Lysosome

Destined

Cargo:AP-1:Arf1-GTP:beta-Arrestin-1:Vamp Complex
ArrowR-HSA-432712 (Reactome)
Lysosome

Destined

Cargo:AP-1:Arf1-GTP:beta-Arrestin-1:Vamp Complex
R-HSA-432706 (Reactome)
Lysosome

Destined

Cargo:AP-1:Beta-arrestin:Vamp:Clathrin Triskelion:Dynamin:Endophilin Complex
ArrowR-HSA-432706 (Reactome)
Lysosome

Destined

Cargo:AP-1:Beta-arrestin:Vamp:Clathrin Triskelion:Dynamin:Endophilin Complex
R-HSA-432707 (Reactome)
Lysosome

Destined

Cargo:AP-1:Beta-arrestin:Vamp:Clathrin Triskelion:Dynamin:Endophilin Complex
mim-catalysisR-HSA-432707 (Reactome)
Lysosome CargoArrowR-HSA-432688 (Reactome)
Lysosome Destined CargoR-HSA-432712 (Reactome)
NAPAR-HSA-429815 (Reactome)
PI(3,5)P2R-HSA-5333658 (Reactome)
PUM1R-HSA-434362 (Reactome)
PiArrowR-HSA-421831 (Reactome)
PiArrowR-HSA-421835 (Reactome)
PiArrowR-HSA-421836 (Reactome)
PiArrowR-HSA-432688 (Reactome)
PiArrowR-HSA-432706 (Reactome)
PiArrowR-HSA-432707 (Reactome)
R-HSA-350769 (Reactome) ARF1 helps to recruit AP-1 to Golgi membrane. AP-1 is not alone in this process of establishing a docking complex at the trans-Golgi Network. This section of the Golgi membrane will be where the new vesicle will be built and loaded.
R-HSA-376357 (Reactome) The lysosomal vesicle is targeted to and fused with the plasma membrane, releasing its contents into the extracellular space.
R-HSA-376364 (Reactome) The vamp8 associated vesicle docks and fuses with the plasma membrane.
R-HSA-376369 (Reactome) The vamp2 associated vesicle docks and fuses with the plasma membrane.
R-HSA-421831 (Reactome) Once the basic components of the docking complex are assembled with one end of AP-1 bound to cargo molecules, the other end binds to clathrin. Clathrin triskelions polymerize into hexagons and pentagons, forming a cage, which leads to membrane deformation. This polymerization step drives the sculpting of the vesicle. The number of clathrin triskelions required to sculpt a vesicle appears to be variable, but has been estimated to require 36 - 60 triskelions assocaited with 30 - 66 AP-1 complexes. Here a ~380 angstroms vesicle is represented with 48 clathrin triskelions and 52 AP-1 complexes.
R-HSA-421833 (Reactome) Once AP-1 is recruited to the trans-Golgi Network membrane the complex of functional vesicle building proteins is joined by the cargo that will be within that vesicle. As with other types of vesicles the cargo itself is part of the vesicle development. Here the cargo is destined for the Golgi-associated vesicle membrane. It is at this stage that a specific Synaptobrevin (Vamp) molecule also joins the complex. It should be noted that only certain Vamp molecules will be found with specific cargo molecules on the newly forming vesicles. However here we represent this reaction in bulk, without specific Vamp and cargo molecule pairings.
R-HSA-421835 (Reactome) Dynamin is recruited to the growing vesicle and, under conditions that interfere with its GTPase activity, dynamin forms a collar or ring around the neck of the budding vesicle. It is unclear whether dynamin acts as a mechanochemical transducer to generate fission or as a recruiter to attach other proteins that are directly responsible for the fission step. Lipid-modifying enzymes such as endophilin are also involved in vesicle formation. Endophilin is an acyltransferase that interacts with dynamin and that generates lysophosphatidic acid. The current view is that this reaction produces a negative curvature at the neck of the vesicle.
R-HSA-421836 (Reactome) The heat shock protein Hsc70 and auxilin, a J-domain containing protein, are responsible for clathrin disassembly through an ATP-dependent reaction. This uncoating step may be a point in the pathway subject to regulation. This final step releases the vesicle from the clathrin cage. The vesicle still contatins a specific Vamp molecule, part of the targeting and fusion mechanism that delivers the vesicle to its ultimate destination. This vesicle also contains its cargo, membrane proteins embeded in the Golgi-associated vesicle membrane.
R-HSA-429815 (Reactome) The ubiquitously expressed protein complexes, named biogenesis of lysosome-related organelles complex or BLOC are required for normal biogenesis of specialized organelles of the endosomal-lysosomal system, such as melanosomes and platelet dense granules.
R-HSA-432688 (Reactome) The heat shock protein Hsc70 and auxilin, a J-domain containing protein, are responsible for clathrin disassembly through an ATP-dependent reaction. This uncoating step may be a point in the pathway subject to regulation. This final step releases the vesicle from the clathrin cage. The vesicle still contatins a specific Vamp molecule, part of the targeting and fusion mechanism that delivers the vesicle to its ultimate destination. This vesicle also contains its cargo, membrane proteins embeded in the lysosome membrane.
R-HSA-432706 (Reactome) Once the basic components of the docking complex are assembled with one end of AP-1 bound to cargo molecules, the other end binds to clathrin. Clathrin triskelions polymerize into hexagons and pentagons, forming a cage, which leads to membrane deformation. This polymerization step drives the sculpting of the lysosome vesicle. Here only 5 clathrin triskelions are represented, though in reality many more would be involved in sculpting an entire vesicle.
R-HSA-432707 (Reactome) Dynamin is recruited to the growing lysosome destined vesicle and, under conditions that interfere with its GTPase activity, dynamin forms a collar or ring around the neck of the budding vesicle. It is unclear whether dynamin acts as a mechanochemical transducer to generate fission or as a recruiter to attach other proteins that are directly responsible for the fission step. Lipid-modifying enzymes such as endophilin are also involved in vesicle formation. Endophilin is an acyltransferase that interacts with dynamin and that generates lysophosphatidic acid. The current view is that this reaction produces a negative curvature at the neck of the vesicle.
R-HSA-432712 (Reactome) Once AP-1 is recruited to the trans-Golgi Network membrane the complex of functional vesicle building proteins is joined by the cargo that will be within that vesicle. As with other types of vesicles the cargo itself is part of the vesicle development. Here the cargo is destined for the lysosome membrane. It is at this stage that a specific Synaptobrevin (Vamp) molecule also joins the complex. It should be noted that only certain Vamp molecules will be found with specific cargo molecules on the newly forming vesicles. However here we represent this reaction in bulk, without specific Vamp and cargo molecule pairings.
R-HSA-434362 (Reactome) Cytosolic proteins are also recruited to the cyctoplasmic face of newly formed vesicles.
R-HSA-5229111 (Reactome) AP-4 complex subunit mu-1 (AP4M1) can recognise and interact with tyrosine-based (YXXphi) sorting signals found within the cytoplasmic tails of integral membrane proteins such as the amyloid precursor protein (APP), implicated in Alzheimer's disease. Once bound to AP4M1, APP is transported from the trans-Golgi network (TGN) to endosomes, thereby reducing amyloidogenic processing of the protein. Disruption of this interaction decreases localisation of APP to endosomes and enhances gamma-secretase-catalysed cleavage of APP to the pathogenic amyloid-beta peptide (Burgos et al. 2010).

R-HSA-5229132 (Reactome) The family of heterotetrameric adaptor protein (AP) complexes function as vesicle coat components, involved in targeting cargo proteins from post-Golgi compartments to the endosomal-lysosomal system. Adaptor protein 4 (AP4) is the most recently discovered and least characterised member of this family. AP4 consists of four subunits; two large adaptins (AP4E1 and AP4B1), a medium adaptin (AP4M1) and a small adaptin (AP4S1). The medium (mu) adaptins of all AP complexes can recognise and interact with tyrosine-based (YXXphi) sorting signals found within the cytoplasmic tails of integral membrane proteins (Aguilar et al. 2001, Hirst et al. 1999). The amyloid precursor protein (APP), implicated in Alzheimer's disease, contains such a signal in its cytoplasmic tail. It can therefore bind to AP4M1 of the AP4 complex and subsequently, be transported from the trans-Golgi network (TGN) to endosomes, thereby reducing amyloidogenic processing of the protein. Disruption of the this interaction decreases localisation of APP to endosomes and enhances gamma-secretase-catalysed cleavage of APP to the pathogenic amyloid-beta peptide (Burgos et al. 2010).

Defects in AP4M1 can cause cerebral palsy, spastic quadriplegic 3 (CPSQ3; MIM:612936), a non-progressive disorder of movement and/or posture resulting from defects in CNS development (Verkerk et al. 2009). Defects in AP4S1 can cause cerebral palsy, spastic quadriplegic 6 (CPSQ6; MIM:614067), a neurodevelopmental disorder characterised by hypertonia and spasticity, and severe mental retardation with poor or absent speech development (Abou Jamra et al. 2011).
R-HSA-5333658 (Reactome) Clathrin-coated vesicles (CCVs) originating from the trans-Golgi network (TGN) provide a major transport pathway from the secretory system to endosomes/lysosomes. Clavesin 1 and 2 (CLVS1 and 2) are enriched on CCVs and form a complex with clathrin heavy chain (CHC) and adaptor protein-1 (AP1) complex, major coat components of TGN-derived CCVs. The complex can bind phosphatidylinositol 3,5-bisphosphate (PIP2), a phospholipid localised to late endosomes and lysosomes. This interaction is thought to assist the transport of cytosolic cargo proteins to the endosomal network (Katoh et al. 2009).
R-HSA-5671702 (Reactome) AP-1 complex subunit gamma-like 2 (AP1G2) is an 87-kDa protein that is similar to gamma-adaptin (AP1G1), a large chain of the AP1 clathrin-associated adaptor complex, both in primary structure (60% amino acid identity) and domain organisation (Takatsu et al. 1998). AP1G2 can be viewed as a putative endosomal sorting and trafficking adaptor that is specifically required for degradative endocytic trafficking and may help in maintaining homeostasis of the multivesicular body (MVB) protein-sorting pathway. AP1G2 specifically interacts with the core ESCRT subunits hepatocyte growth factor-regulated tyrosine kinase substrate (HGS, aka HRS) and charged multivesicular body protein 2a (CHMP2A aka hVps2-1), involved in MVB processing (Doring et al. 2010).

AP1G2 is also able to bind the large envelope protein (surface protein S) of the hepatitis B virus (HBV), a protein that plays an important role in viral budding (Hartmann-Stuhler & Prange 2001). Disruption of this binding can inhibit virus production (Rost et al. 2006). Thus, AP1G2 may play a role in L-mediated processes of viral biogenesis or pathogenesis.
R-HSA-8874979 (Reactome) Golgi resident protein GCP60 (ACBD3) is a Golgi membrane-associated protein thought to be involved in the maintenance of the Golgi structure by interacting with Golgin subfamily B member 1 (GOLGB1, giantin), which may mediate protein transport between the endoplasmic reticulum and the Golgi (Sohda et al. 2001).
SH3D19R-HSA-434362 (Reactome)
SH3GL2ArrowR-HSA-421835 (Reactome)
SH3GL2ArrowR-HSA-432707 (Reactome)
SH3GL2R-HSA-421831 (Reactome)
SH3GL2R-HSA-432706 (Reactome)
SNAP23ArrowR-HSA-376357 (Reactome)
SNAP23ArrowR-HSA-376364 (Reactome)
SNAP23ArrowR-HSA-376369 (Reactome)
SNAP23R-HSA-376357 (Reactome)
SNAP23R-HSA-376364 (Reactome)
SNAP23R-HSA-376369 (Reactome)
STX4ArrowR-HSA-376357 (Reactome)
STX4ArrowR-HSA-376364 (Reactome)
STX4ArrowR-HSA-376369 (Reactome)
STX4R-HSA-376357 (Reactome)
STX4R-HSA-376364 (Reactome)
STX4R-HSA-376369 (Reactome)
TXNDC5R-HSA-429815 (Reactome)
VAMP2ArrowR-HSA-376369 (Reactome)
VAMP2R-HSA-376369 (Reactome)
VAMP7ArrowR-HSA-376357 (Reactome)
VAMP7R-HSA-376357 (Reactome)
VAMP8ArrowR-HSA-376364 (Reactome)
VAMP8R-HSA-376364 (Reactome)
Vamp2:SNAP23:Syn4

Secretory granule docking and fusion

complex
mim-catalysisR-HSA-376369 (Reactome)
Vamp7:SNAP23:Syn4

Plasma membrane vesicle docking and

fusion complex
mim-catalysisR-HSA-376357 (Reactome)
Vamp8:SNAP23:Syn4

Secretory granule docking and fusion

complex
mim-catalysisR-HSA-376364 (Reactome)
VampArrowR-HSA-421836 (Reactome)
VampArrowR-HSA-432688 (Reactome)
VampArrowR-HSA-434362 (Reactome)
VampR-HSA-421833 (Reactome)
VampR-HSA-432712 (Reactome)
VampR-HSA-434362 (Reactome)
Personal tools