Biotin metabolism (Mycobacterium tuberculosis)

From WikiPathways

Description

Quality Tags

Ontology Terms

Bibliography

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History

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Compare	Revision	Action	Time	User	Comment
	128405	view	04:21, 4 February 2024	Eweitz	Fix typo
	126401	view	19:17, 26 April 2023	Egonw	License is CCZero
	122875	view	18:16, 27 May 2022	Egonw	Made a pathway clickable
	105017	view	08:36, 28 June 2019	Fehrhart	connected lines
	89513	view	10:45, 16 September 2016	Mkutmon	ontology tag fix
	78481	view	10:28, 7 January 2015	MaintBot	added missing graphIds
	72180	view	22:29, 25 October 2013	AlexanderPico	added corrected or missing xrefs
	71557	view	19:29, 17 October 2013	MaintBot	Automated update of data sources
	69469	view	20:08, 8 July 2013	MaintBot	Updated to 2013 gpml schema
	67091	view	10:05, 26 June 2013	Christine Chichester	Ontology Term : 'biotin metabolic pathway' added !
	41404	view	01:05, 2 March 2011	MaintBot	Removed redundant pathway information and comments
	38986	view	18:50, 25 September 2010	AlexanderPico	Modified categories
	38985	view	18:49, 25 September 2010	AlexanderPico	Modified description
	38984	view	18:49, 25 September 2010	AlexanderPico
	38983	view	18:48, 25 September 2010	AlexanderPico	removed redundant overlapping lines
	38982	view	18:46, 25 September 2010	AlexanderPico	manually added TubercuList to GPML; missing from database pulldown menu!
	38981	view	18:44, 25 September 2010	AlexanderPico	fixed connections to groups
	38763	view	23:05, 23 September 2010	AllanKuchinsky	mo' cleanup of layout
	38759	view	22:45, 23 September 2010	AllanKuchinsky	cleanup layout
	38733	view	21:27, 23 September 2010	AllanKuchinsky	clean up layout
	38732	view	21:24, 23 September 2010	AllanKuchinsky	Periodical save, work in progress
	38730	view	21:14, 23 September 2010	AllanKuchinsky	Periodical save, work in progress
	38728	view	21:11, 23 September 2010	AllanKuchinsky	stcking 6.3.4.- enzyme family
	38726	view	21:04, 23 September 2010	AllanKuchinsky	Periodical save, work in progress
	38725	view	20:56, 23 September 2010	AllanKuchinsky	Specify description
	38724	view	20:53, 23 September 2010	AllanKuchinsky	Periodical save, work in progress
	38723	view	19:44, 23 September 2010	AlexanderPico	added pathway nodes
	38722	view	19:40, 23 September 2010	AlexanderPico	cleaned up demo of 3.4 group
	38689	view	18:18, 23 September 2010	AllanKuchinsky	Periodical save, work in progress
	38686	view	18:07, 23 September 2010	AllanKuchinsky	cleanup elbow
	38684	view	17:57, 23 September 2010	AlexanderPico
	38683	view	17:54, 23 September 2010	AllanKuchinsky	elbow line
	38681	view	17:48, 23 September 2010	AllanKuchinsky	Specify description
	38679	view	17:36, 23 September 2010	AllanKuchinsky	grouping
	38677	view	17:29, 23 September 2010	AllanKuchinsky	grouping 3.4.-- family
	38631	view	21:14, 22 September 2010	AllanKuchinsky	Periodical save, work in progress
	38629	view	20:59, 22 September 2010	AllanKuchinsky	Periodical save, work in progress
	38518	view	17:39, 21 September 2010	MaintBot	New pathway

External references

DataNodes

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Name	Type	Database reference	Comment
6-Carboxyhexanoate	Metabolite	C02656 (KEGG Compound)
6-Carboxyhexanoyl-CoA	Metabolite	C01063 (KEGG Compound)
8-Amino-7-oxononanoate	Metabolite	C01092 (KEGG Compound)
Biotin	Metabolite	C00120 (KEGG Compound)
Biotinyl-CoA	Metabolite	C01894 (KEGG Compound)
Biotynyl-5'-AMP	Metabolite	C05921 (KEGG Compound)
Dethiobiotin	Metabolite	C01909 (KEGG Compound)
Holo-[carboxylase]	Metabolite	C06250 (KEGG Compound)
L-Lysine	Metabolite	C00047 (KEGG Compound)
Lysine degradation	Pathway	WP1669 (WikiPathways)
N6-D-Biotinyl-L-lysine	Metabolite	C05552 (KEGG Compound)
Rv2223c	GeneProduct	Rv2223c (TubercuList)	Original kegg element: gene;25;mtu:Rv2223c mtu:Rv2224c mtu:Rv2535c mtu:Rv2672 mtu:Rv3668c mtu:Rv3883c mtu:Rv3886c
Rv2224c	GeneProduct	Rv2224c (TubercuList)	Original kegg element: gene;25;mtu:Rv2223c mtu:Rv2224c mtu:Rv2535c mtu:Rv2672 mtu:Rv3668c mtu:Rv3883c mtu:Rv3886c
Rv2672	GeneProduct	Rv2672 (TubercuList)	Original kegg element: gene;25;mtu:Rv2223c mtu:Rv2224c mtu:Rv2535c mtu:Rv2672 mtu:Rv3668c mtu:Rv3883c mtu:Rv3886c
Rv3668c	GeneProduct	Rv3668c (TubercuList)	Original kegg element: gene;25;mtu:Rv2223c mtu:Rv2224c mtu:Rv2535c mtu:Rv2672 mtu:Rv3668c mtu:Rv3883c mtu:Rv3886c
Tropane, piperidine and pyridine alkaloid biosynthesis	Pathway
bioA	GeneProduct	Rv1568 (TubercuList)	Original kegg element: gene;24;mtu:Rv1568
bioB	GeneProduct	Rv1589 (TubercuList)	Original kegg element: gene;22;mtu:Rv1589
bioD	GeneProduct	Rv1570 (TubercuList)	Original kegg element: gene;23;mtu:Rv1570
bioF1	GeneProduct	Rv1569 (TubercuList)	Original kegg element: gene;26;mtu:Rv0032 mtu:Rv1569
bioF2	GeneProduct	Rv0032 (TubercuList)	Original kegg element: gene;26;mtu:Rv0032 mtu:Rv1569
bioW	GeneProduct	6.2.1.14 (Enzyme Nomenclature)
birA	GeneProduct	Rv3279c (TubercuList)	Original kegg element: gene;19;mtu:Rv3279c;ec:6.3.4.15
cpd:C01037	Metabolite	C01037 (KEGG Compound)
ec:3.5.1.12	GeneProduct	3.5.1.12 (Enzyme Nomenclature)
ec:6.2.1.11	GeneProduct	6.2.1.11 (Enzyme Nomenclature)
ec:6.3.4.10	GeneProduct	6.3.4.10 (Enzyme Nomenclature)
ec:6.3.4.11	GeneProduct	6.3.4.11 (Enzyme Nomenclature)
ec:6.3.4.9	GeneProduct	6.3.4.9 (Enzyme Nomenclature)
mycP1	GeneProduct	Rv3883c (TubercuList)	Original kegg element: gene;25;mtu:Rv2223c mtu:Rv2224c mtu:Rv2535c mtu:Rv2672 mtu:Rv3668c mtu:Rv3883c mtu:Rv3886c Kyu, Madhu: note that these all correspond to the enzyme family 3.4.-.-
mycP2	GeneProduct	Rv3886c (TubercuList)	Original kegg element: gene;25;mtu:Rv2223c mtu:Rv2224c mtu:Rv2535c mtu:Rv2672 mtu:Rv3668c mtu:Rv3883c mtu:Rv3886c
pepQ	GeneProduct	Rv2535c (TubercuList)	Original kegg element: gene;25;mtu:Rv2223c mtu:Rv2224c mtu:Rv2535c mtu:Rv2672 mtu:Rv3668c mtu:Rv3883c mtu:Rv3886c

Annotated Interactions

No annotated interactions