WikiPathways:Publications

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About WikiPathways

Pico et al. WikiPathways: Pathway Editing for the People. PLoS Biol 6(7) 2008 The first article introducing WikiPathways and wiki-based pathway editing.
Kelder et al. Mining Biological Pathways Using WikiPathways Web Services. PLoS ONE 4(7), 2009 This article describes the WikiPathways web service interface, with several use case examples.
Kelder et al. WikiPathways: Building Research Communities on Biological Pathways. NAR, 2012 Here we describe the development of WikiPathways and the community of contributors since 2008.

Selected citations

Jennen et al. Biotransformation pathway maps in WikiPathways enable direct visualization of drug metabolism related expression changes. Drug Discov Today Aug 11, 2010 Describes the creation of several biotransformation pathways at WikiPathways, and the visualization of microarray data on these pathways.
Emig et al. AltAnalyze and DomainGraph: analyzing and visualizing exon expression data. Nucleic Acids Research, 2010, Vol. 38, No. suppl_2 W755-W762 This articles presents integrated tools for the analysis and visualization of alternative splicing data at multiple levels, including WikiPathways.
Pico et al. SNPLogic: an interactive single nucleotide polymorphism selection, annotation, and prioritization system. Nucleic Acids Research 2009 37(Database issue):D803-D809 SNPLogic provides a comprehensive SNP selection, annotation and prioritization system for design and analysis of genotyping experiments. SNPLogic integrates many different types of SNP information, including association to biological pathways.

All WikiPathways citations

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