Folic acid network (Canis familiaris)

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1426201627192, 152428221, 82592313294, 612TBBConversionBTBGeneric enzymeBindingBBBMain functionsBBBNucleotide biosynthesisTFormation of methionineBBIEBBSynthesis of cholinePLASMANegative effectBBBUnspecified interactionBTransportTCNMETABOLITEBINORGANIC IONTTInterconversionReactionBPositive effectFormation of HemeTTTBBBBBInfluence on expressionUnspecified effectBBBTransformationCompetitionINTRACELULARGPX2AA (n-6)O2Leukotriene C4H2ONADPHFADCobalamin2-Ketobutyric acidPGE2L-MethioninePGFSUric acidTMethylmalonic acid Pyridoxal-5'-phosphateCATEPA (n-3)PGE2GPX1BetaineHemeAscorbic acidLeukotriene D4XDHAdipic acid PGD2TryptophanNicotinamide15-HETEd5 desaturaseCarnitinePGF2aLA (n-6)MTHFRIronZincManganesed4 desaturaseGPX 6Ascorbic acidLipoxin B4CystathioneL-Glutamic acidLeukotriene B4HypoxanthineTXNRD25-HPETESeleniumEPA (n-3)a-tocopherolCOX2Uric acidLipoxin A4Leukotriene C4CopperCBSS-Adenosylhomocysteine TTIEC22:5 (n-6)EthanolamineGlutathioneTXNRD1SeleniumTromboxane A2PGH25,10-METHYL-THFF2-IsoprostaneTCN1PGI2Pyridoxal-5'-phosphateL-Glutamic acidSEPX1SELKGlutathione disulfidea TocopherolLipoic acid1-methylnicotinamideLeukotriene B4COX1SerinePTGESAdipic acidC22:5 (n-6)MethionineVitamin B12PGF2aRiboflavinNADPHLeukotriene D4Leukotriene A4SOD1FADS2HomocysteinePGG3ThioredoxinPGE3ROSSerineGSHRH2O2LA (n-6)Thromboxane A2CopperS-Adenosylhomocysteine CalciumPTGISHomocysteinePGI2NADPPTGDSHypoxanthineGPX 3 MTR2-Ketobutyric acidLipoxin A4GlutathioneFMN1Leukotriene F4Methylmalonic acidALOX5DHA (n-3)ZincALA (n-3)iPF2-alphaBAA (n-6)15-HETEGlycineGlycineLeukotrieneE4S-Adenosylmethionine ALA (n-3)PGD2CobalaminCholineTRXR 3FOLIC ACIDS-Adenosylmethionine1-Methylnicotinamide5,10-METHYL-THFPNPOXanthineCysteinePGG2LeukotrieneE4KMONiacinEthanolamineIronVitamin B12THASSEPW1PGH3EndoperoxidaseThromboxane B2FOLIC ACIDCNMethionine sulfoxideCysteineBGPX 4DHA (n-3)NADPCalcium18115, 21101773


Description

The folic acid-centred micronutrient biological network. The most relevant biochemical processes related to folic acid in the context of metabolism, oxidation and inflammation are represented. Also, the compartmental separation (intracellular vs. plasma) is presented, identifying the folic acid centred plasma metabolome.

Comments

HomologyConvert 
This pathway was inferred from Homo sapiens pathway WP176(r30153) with a 53% conversion rate.

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Quality Tags

Ontology Terms

 

Bibliography

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  1. Fernandes-Costa F: Metz J.; ''Vitamin B12 binders (transcobalamins) in serum.''; Crit Rev Clin Lab Sci. , 1982 PubMed Europe PMC Scholia
  2. Wilson A, Platt R, Wu Q, Leclerc D, Christensen B, Yang H, Gravel RA, Rozen R; ''A common variant in methionine synthase reductase combined with low cobalamin (vitamin B12) increases risk for spina bifida. ''; Molecular genetics and metabolism, 1999 PubMed Europe PMC Scholia
  3. WikiPathways; ''Selenoproteins''; http://www.wikipathways.org/index.php/Pathway:Homo_sapiens:Selenoproteins
  4. Selhub J.; ''Homocysteine metabolism.''; Annu Rev Nutr. , 1999 PubMed Europe PMC Scholia
  5. Proctor PH.; ''Free radicals, uric acid, and human disease.''; Free Radic Biol Med., 1996 PubMed Europe PMC Scholia
  6. Leclerc D, Campeau E, Goyette P, Adjalla CE, Christensen B, Ross M, Eydoux P, Rosenblatt DS, Rozen R, Gravel RA.; ''Human methionine synthase: cDNA cloning and identification of mutations in patients of the cblG complementation group of folate/cobalamin disorders. ''; Hum Mol Genet. , 1996 PubMed Europe PMC Scholia
  7. Denis D, Charleson S, Rackham A, Jones TR, Ford-Hutchinson AW, Lord A, Cirino M, Girard Y, Larue M, Rokach J.; ''Synthesis and biological activities of leukotriene F4 and leukotriene F4 sulfone''; Prostaglandins., 1982 PubMed Europe PMC Scholia
  8. Hall CA; ''Transcobalamins I and II as natural transport proteins of vitamin B12. ''; The Journal of clinical investigation , 1975 PubMed Europe PMC Scholia
  9. George J, Struthers AD.; ''The role of urate and xanthine oxidase inhibitors in cardiovascular disease.''; Cardiovasc Ther., 2008 PubMed Europe PMC Scholia
  10. Morrow JD, Roberts LJ 2nd.; ''The isoprostanes. Current knowledge and directions for future research.''; Biochem Pharmacol., 1996 PubMed Europe PMC Scholia
  11. https://analysis.ingenuity.com/; ''Arachidonic Acid Metabolism''; Ingenuity sofware
  12. http://lpi.oregonstate.edu/infocenter/vitamins/vitaminB6/; ''Vitamin B 6''; Linus Paulin institute
  13. https://analysis.ingenuity.com/; ''Prostaglandin and Leukotriene Metabolism''; Ingenuity software
  14. Singh U, Devaraj S, Jialal I.; '' Vitamin E, oxidative stress, and inflammation.''; Annu Rev Nutr., 2005 PubMed Europe PMC Scholia
  15. Bandarian V, Pattridge KA, Lennon BW, Huddler DP, Matthews RG, Ludwig ML.; ''Domain alternation switches B(12)-dependent methionine synthase to the activation conformation.''; Nat Struct Biol. , 2002 PubMed Europe PMC Scholia
  16. Kryukov GV, Kumar RA, Koc A, Sun Z, Gladyshev VN.; ''Selenoprotein R is a zinc-containing stereo-specific methionine sulfoxide reductase.''; Proc Natl Acad Sci U S A. , 2002 PubMed Europe PMC Scholia
  17. ''Food and Nutrition Board, Institute of Medicine. Vitamin B6. Dietary Reference Intakes: Thiamin, Riboflavin, Niacin, Vitamin B6, Vitamin B12, Pantothenic Acid, Biotin, and Choline.''; Washington D.C.: National Academies Press, 1998
  19. Lu C, Qiu F, Zhou H, Peng Yp, Hao W, Xu J, Yuan J, Wang S, Qiang B, Xu C, Peng X.; ''Identification and characterization of selenoprotein K: an antioxidant in cardiomyocytes.''; FEBS Lett., 2006 PubMed Europe PMC Scholia
  20. http://lpi.oregonstate.edu/infocenter/vitamins/fa/; ''Folic acid''; Linus Pauling Institute
  21. Guzik TJ, Korbut R, Adamek-Guzik T.; ''Nitric oxide and superoxide in inflammation and immune regulation.''; J Physiol Pharmacol., 2003 PubMed Europe PMC Scholia
  22. Longhi RC, Fleisher LD, Tallan HH, Gaull GE.; ''Cystathionine beta-synthase deficiency: a qualitative abnormality of the deficient enzyme modified by vitamin B6 therapy.''; Pediatr Res. , 1977 PubMed Europe PMC Scholia
  23. Vladimir Kery, Loelle Poneleit, Jeffrey D. Meyer, Mark C. Manning, Jan P. Kraus; ''Binding of Pyridoxal 5'-Phosphate to the Heme Protein Human Cystathionine -Synthase''; Biochemistry. , 1998
  24. Fowler B.; ''Homocysteine: overview of biochemistry, molecular biology, and role in disease processes. ''; Semin Vasc Med, 2005 PubMed Europe PMC Scholia
  25. Ben van Ommen, Susan Fairweather-Tait, Andreas Freidig, Alwine Kardinaal, Augustin Scalbert, Suzan Wopereis; ''A network biology model of micronutrient related health''; Br J Nutr, 2008 PubMed Europe PMC Scholia
  26. Petersen Shay K, Moreau RF, Smith EJ, Hagen TM.; ''Is alpha-lipoic acid a scavenger of reactive oxygen species in vivo? Evidence for its initiation of stress signaling pathways that promote endogenous antioxidant capacity.''; IUBMB Life., 2008 PubMed Europe PMC Scholia
  27. https://analysis.ingenuity.com/pa/; ''Prostaglandin and Leukotriene Metabolism''; Ingenuity software
  28. Basu S.; ''Isoprostanes: novel bioactive products of lipid peroxidation.''; Free Radic Res., 2004 PubMed Europe PMC Scholia
  29. Selhub J.; ''Homocysteine metabolism.''; Annu Rev Nutr, 1999 PubMed Europe PMC Scholia

History

View all...
CompareRevisionActionTimeUserComment
120927view19:23, 31 January 2022EgonwReplaced an old HMDB identifier with the current one
120434view16:51, 1 December 2021EgonwRemoved spaces from two pubmed identifiers
118118view10:58, 24 May 2021EweitzModified title
106063view11:57, 16 August 2019MaintBotHMDB identifier normalization
102897view10:28, 27 January 2019EgonwReplace a PubChem SID with a CID
102080view19:35, 28 November 2018EgonwRemoved whitespace in PubMed identifiers.
87512view01:51, 25 July 2016AlexanderPicoOntology Term : 'classic metabolic pathway' added !
87511view01:50, 25 July 2016AlexanderPicoOntology Term : 'folic acid deficiency pathway' added !
82694view18:08, 22 October 2015EgonwFixed a typo.
74496view15:57, 26 April 2014EgonwFixed a PubMed ID.
74164view09:50, 2 April 2014EgonwUpdated the PubChem-substance data source.
74163view09:49, 2 April 2014EgonwUpdated the PubChem-compound data source.
74162view09:47, 2 April 2014EgonwMarked two GeneProducts as such.
74158view09:35, 2 April 2014EgonwReplaced an outdated HMDB identifier with the 3.5 one.
71452view19:16, 17 October 2013MaintBotAutomated update of data sources
68508view21:52, 5 July 2013MaintBotUpdated to 2013 gpml schema
40660view21:48, 1 March 2011MaintBotRemoved redundant pathway information and comments
33952view18:21, 9 December 2009MaintBotAutomatic update of empty xrefs
33197view18:19, 5 November 2009KhanspersModified categories
32269view13:04, 15 August 2009MaintBotFixed text labels
31802view12:19, 14 August 2009MaintBotFixed group labels
31297view20:09, 13 August 2009MaintBotFixed text labels
30761view23:12, 29 July 2009MaintBotNew pathway

External references

DataNodes

View all...
NameTypeDatabase referenceComment
1-MethylnicotinamideMetaboliteHMDB0000699 (HMDB)
1-methylnicotinamideMetaboliteHMDB0000699 (HMDB)
15-HETEMetaboliteHMDB0011134 (HMDB)
2-Ketobutyric acidMetaboliteHMDB0000005 (HMDB)
5,10-METHYL-THFMetaboliteHMDB0001396 (HMDB)
5-HPETEMetaboliteHMDB0001193 (HMDB)
AA (n-6)MetaboliteHMDB0001043 (HMDB)
ALA (n-3)MetaboliteHMDB0001388 (HMDB)
ALOX5Protein477753 (Entrez Gene)
Adipic acid MetaboliteHMDB0000448 (HMDB)
Adipic acidMetaboliteHMDB0000448 (HMDB)
Ascorbic acidMetaboliteHMDB0000044 (HMDB)
BGeneProduct
BetaineMetaboliteHMDB0000043 (HMDB)
C22:5 (n-6)MetaboliteHMDB0001976 (HMDB)
CATProtein403474 (Entrez Gene)
CBSProtein611071 (Entrez Gene)
CNGeneProduct
COX1Protein804478 (Entrez Gene)
COX2Protein804479 (Entrez Gene)
CalciumMetaboliteHMDB0000464 (HMDB)
CarnitineMetaboliteHMDB0000062 (HMDB)
CholineMetaboliteHMDB0000097 (HMDB)
CobalaminMetaboliteHMDB0002174 (HMDB)
CopperMetaboliteHMDB0000657 (HMDB)
CystathioneMetaboliteHMDB0000099 (HMDB)
CysteineMetaboliteHMDB0000574 (HMDB)
DHA (n-3)MetaboliteHMDB0002183 (HMDB)
EPA (n-3)MetaboliteHMDB0001999 (HMDB)
EndoperoxidaseProtein
EthanolamineMetaboliteHMDB0000149 (HMDB)
F2-IsoprostaneMetaboliteHMDB0004659 (HMDB)
FADMetabolite703 (PubChem-compound)
FADS2Protein483792 (Entrez Gene)
FMN1GeneProduct342184 (Entrez Gene)
FOLIC ACIDMetaboliteHMDB0000121 (HMDB)
GPX 3 Protein
GPX 4Protein
GPX 6Protein
GPX1Protein442961 (Entrez Gene)
GPX2Protein480356 (Entrez Gene)
GSHRProteinType your comment here
Glutathione disulfideMetabolite65359 (PubChem-compound) Type your comment here
GlutathioneMetaboliteHMDB0000125 (HMDB)
GlycineMetaboliteHMDB0000123 (HMDB)
H2O2MetaboliteHMDB0003125 (HMDB)
H2OMetaboliteHMDB0002111 (HMDB)
HemeMetaboliteHMDB0003178 (HMDB)
HomocysteineMetabolite
HomocysteineMetaboliteHMDB0000742 (HMDB)
HypoxanthineMetaboliteHMDB0000157 (HMDB)
IEGeneProduct
IronMetaboliteHMDB0000692 (HMDB)
KMOProtein480093 (Entrez Gene)
L-Glutamic acidMetaboliteHMDB0000148 (HMDB)
L-MethionineMetaboliteHMDB0000696 (HMDB)
LA (n-6)MetaboliteHMDB0000673 (HMDB)
Leukotriene A4MetaboliteHMDB0001337 (HMDB)
Leukotriene B4MetaboliteHMDB0001085 (HMDB)
Leukotriene C4MetaboliteHMDB0001198 (HMDB)
Leukotriene D4MetaboliteHMDB0003080 (HMDB)
Leukotriene F4Metabolite
LeukotrieneE4MetaboliteHMDB0002200 (HMDB)
Lipoic acidMetaboliteHMDB0001451 (HMDB)
Lipoxin A4MetaboliteHMDB0004385 (HMDB)
Lipoxin B4MetaboliteHMDB0005082 (HMDB)
MTHFRProtein478230 (Entrez Gene)
MTRProtein479190 (Entrez Gene)
ManganeseMetaboliteHMDB0001333 (HMDB)
Methionine sulfoxideMetaboliteHMDB0002005 (HMDB)
MethionineMetaboliteHMDB0000696 (HMDB)
Methylmalonic acid MetaboliteHMDB0000202 (HMDB)
Methylmalonic acidMetaboliteHMDB0000202 (HMDB)
NADPHMetaboliteHMDB0000221 (HMDB)
NADPMetaboliteHMDB0000217 (HMDB)
NiacinMetaboliteHMDB0001406 (HMDB)
NicotinamideMetabolite936 (PubChem-compound)
O2MetaboliteHMDB0001377 (HMDB)
PGD2MetaboliteHMDB0001403 (HMDB)
PGE2Metabolite
PGE3MetaboliteHMDB0002664 (HMDB)
PGF2aMetaboliteHMDB0001139 (HMDB)
PGFSProtein
PGG2MetaboliteHMDB0003235 (HMDB)
PGG3Metabolite
PGH2MetaboliteHMDB0001381 (HMDB)
PGH3Metabolite
PGI2Metabolite
PGI2MetaboliteHMDB0001335 (HMDB)
PNPOProtein480540 (Entrez Gene)
PTGDSProtein403740 (Entrez Gene)
PTGESProtein480698 (Entrez Gene)
PTGISProtein485919 (Entrez Gene)
Pyridoxal-5'-phosphateMetaboliteHMDB0001491 (HMDB)
ROSMetabolitehttp://en.wikipedia.org/wiki/Reactive_oxygen_species
RiboflavinMetaboliteHMDB0000244 (HMDB) Type your comment here
S-Adenosylhomocysteine MetaboliteHMDB0000939 (HMDB)
S-Adenosylmethionine MetaboliteHMDB0001185 (HMDB)
S-AdenosylmethionineMetaboliteHMDB0001185 (HMDB)
SELKProtein476586 (Entrez Gene)
SEPW1Protein612109 (Entrez Gene)
SEPX1Protein611032 (Entrez Gene)
SOD1Protein403559 (Entrez Gene)
SeleniumMetaboliteHMDB0001349 (HMDB)
SerineMetaboliteHMDB0000187 (HMDB)
TGeneProduct403653 (Entrez Gene)
TCN1Protein612538 (Entrez Gene)
THASProtein
TRXR 3Protein
TTGeneProduct
TXNRD1Protein474536 (Entrez Gene)
TXNRD2Protein608155 (Entrez Gene)
ThioredoxinGeneProduct7295 (Entrez Gene)
Thromboxane A2MetaboliteHMDB0001452 (HMDB)
Thromboxane B2MetaboliteHMDB0003252 (HMDB)
Tromboxane A2MetaboliteHMDB0001452 (HMDB)
TryptophanMetaboliteHMDB0000929 (HMDB)
Uric acidMetaboliteHMDB0000289 (HMDB)
Vitamin B12MetaboliteHMDB0000607 (HMDB)
XDHProtein483028 (Entrez Gene)
XanthineMetaboliteHMDB0000292 (HMDB)
ZincMetaboliteHMDB0015532 (HMDB)
a TocopherolMetaboliteHMDB0001893 (HMDB)
a-tocopherolMetaboliteHMDB0001893 (HMDB)
d4 desaturaseProtein
d5 desaturaseProtein
iPF2-alphaMetaboliteHMDB0004659 (HMDB)

Annotated Interactions

No annotated interactions
Retrieved from "https://classic.wikipathways.org/index.php/Pathway:WP1192"
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