Download Pathways

From WikiPathways

Contents 1 GPML 2 Eu.Gene 3 Plain text 4 PDF 5 SVG 6 PNG 7 Flatfile

Choose one of the file types below to download a set of pathways in that format. Choose between the following sets:

Featured pathways

Only pathways that have been explicitly marked with the 'Featured pathway' curation tag. This includes pathways that have been carefully curated and typically excludes draft or test pathways not intended for distribution. (recommended)

All pathways

Includes non-featured pathways, but still excludes test or tutorial pathways (such as the Sandbox pathway).

GPML

Click on one of the links below to download all pathways in GPML format. You can view and edit GPML files in PathVisio. From PathVisio you can also export these files to the [www.genmapp.org GenMAPP] mapp format and PDF.

All pathways	Featured pathways	Analysis collection pathways
Unspecified Acetobacterium woodii Anopheles gambiae Arabidopsis thaliana Bacillus subtilis Beta vulgaris Brassica napus Bos taurus Caenorhabditis elegans Canis familiaris Clostridium thermocellum Caulobacter vibrioides Danio rerio Daphnia magna Daphnia pulex Drosophila melanogaster Escherichia coli Equus caballus Gallus gallus Glycine max Gibberella zeae Homo sapiens Hordeum vulgare Mus musculus Mycobacterium tuberculosis Oryza sativa Ovis aries Pan troglodytes Populus trichocarpa Rattus norvegicus Saccharomyces cerevisiae Solanum lycopersicum Sus scrofa Triticum aestivum Vitis vinifera Xenopus tropicalis Zea mays Plasmodium falciparum	Arabidopsis thaliana Bos taurus Caenorhabditis elegans Canis familiaris Danio rerio Drosophila melanogaster Escherichia coli Equus caballus Gallus gallus Homo sapiens Mus musculus Mycobacterium tuberculosis Oryza sativa Pan troglodytes Populus trichocarpa Rattus norvegicus Saccharomyces cerevisiae Zea mays	Acetobacterium woodii Anopheles gambiae Arabidopsis thaliana Bacillus subtilis Brassica napus Bos taurus Caenorhabditis elegans Canis familiaris Caulobacter vibrioides Danio rerio Daphnia magna Drosophila melanogaster Escherichia coli Equus caballus Gallus gallus Gibberella zeae Homo sapiens Hordeum vulgare Mus musculus Mycobacterium tuberculosis Oryza sativa Ovis aries Pan troglodytes Populus trichocarpa Rattus norvegicus Saccharomyces cerevisiae Solanum lycopersicum Sus scrofa Triticum aestivum Vitis vinifera Zea mays Plasmodium falciparum

KEGG pathways for select species are available in GPML format at PathVisio.org. (KEGG content current as of April 7th, 2009)

Eu.Gene

Click on one of the links below to download all pathways in the Eu.Gene format (pwf). Eu.Gene is a tool for microarray analysis in context of biological pathways (read more).

All pathways

Featured pathways

Unspecified Acetobacterium woodii Anopheles gambiae Arabidopsis thaliana Bacillus subtilis Beta vulgaris Brassica napus Bos taurus Caenorhabditis elegans Canis familiaris Clostridium thermocellum Caulobacter vibrioides Danio rerio Daphnia magna Daphnia pulex Drosophila melanogaster Escherichia coli Equus caballus Gallus gallus Glycine max Gibberella zeae Homo sapiens Hordeum vulgare Mus musculus Mycobacterium tuberculosis Oryza sativa Ovis aries Pan troglodytes Populus trichocarpa Rattus norvegicus Saccharomyces cerevisiae Solanum lycopersicum Sus scrofa Triticum aestivum Vitis vinifera Xenopus tropicalis Zea mays Plasmodium falciparum

Arabidopsis thaliana Bos taurus Caenorhabditis elegans Canis familiaris Danio rerio Drosophila melanogaster Escherichia coli Equus caballus Gallus gallus Homo sapiens Mus musculus Mycobacterium tuberculosis Oryza sativa Pan troglodytes Populus trichocarpa Rattus norvegicus Saccharomyces cerevisiae Zea mays

Plain text

Click on one of the links below to download all pathways in plain text format. This format contains a list of all datanodes, with the identifier in the first column, and the database system in the second column.

All pathways

Featured pathways

Unspecified Acetobacterium woodii Anopheles gambiae Arabidopsis thaliana Bacillus subtilis Beta vulgaris Brassica napus Bos taurus Caenorhabditis elegans Canis familiaris Clostridium thermocellum Caulobacter vibrioides Danio rerio Daphnia magna Daphnia pulex Drosophila melanogaster Escherichia coli Equus caballus Gallus gallus Glycine max Gibberella zeae Homo sapiens Hordeum vulgare Mus musculus Mycobacterium tuberculosis Oryza sativa Ovis aries Pan troglodytes Populus trichocarpa Rattus norvegicus Saccharomyces cerevisiae Solanum lycopersicum Sus scrofa Triticum aestivum Vitis vinifera Xenopus tropicalis Zea mays Plasmodium falciparum

Arabidopsis thaliana Bos taurus Caenorhabditis elegans Canis familiaris Danio rerio Drosophila melanogaster Escherichia coli Equus caballus Gallus gallus Homo sapiens Mus musculus Mycobacterium tuberculosis Oryza sativa Pan troglodytes Populus trichocarpa Rattus norvegicus Saccharomyces cerevisiae Zea mays

PDF

Click on one of the links below to download all pathways in Portable Document Format (PDF).

All pathways

Featured pathways

Unspecified Acetobacterium woodii Anopheles gambiae Arabidopsis thaliana Bacillus subtilis Beta vulgaris Brassica napus Bos taurus Caenorhabditis elegans Canis familiaris Clostridium thermocellum Caulobacter vibrioides Danio rerio Daphnia magna Daphnia pulex Drosophila melanogaster Escherichia coli Equus caballus Gallus gallus Glycine max Gibberella zeae Homo sapiens Hordeum vulgare Mus musculus Mycobacterium tuberculosis Oryza sativa Ovis aries Pan troglodytes Populus trichocarpa Rattus norvegicus Saccharomyces cerevisiae Solanum lycopersicum Sus scrofa Triticum aestivum Vitis vinifera Xenopus tropicalis Zea mays Plasmodium falciparum

Arabidopsis thaliana Bos taurus Caenorhabditis elegans Canis familiaris Danio rerio Drosophila melanogaster Escherichia coli Equus caballus Gallus gallus Homo sapiens Mus musculus Mycobacterium tuberculosis Oryza sativa Pan troglodytes Populus trichocarpa Rattus norvegicus Saccharomyces cerevisiae Zea mays

SVG

Click on one of the links below to download all pathways in SVG format. The SVG files can be used to create high quality images for publication purposes. You can edit and convert the SVG files using Inkscape.

All pathways

Featured pathways

Unspecified Acetobacterium woodii Anopheles gambiae Arabidopsis thaliana Bacillus subtilis Beta vulgaris Brassica napus Bos taurus Caenorhabditis elegans Canis familiaris Clostridium thermocellum Caulobacter vibrioides Danio rerio Daphnia magna Daphnia pulex Drosophila melanogaster Escherichia coli Equus caballus Gallus gallus Glycine max Gibberella zeae Homo sapiens Hordeum vulgare Mus musculus Mycobacterium tuberculosis Oryza sativa Ovis aries Pan troglodytes Populus trichocarpa Rattus norvegicus Saccharomyces cerevisiae Solanum lycopersicum Sus scrofa Triticum aestivum Vitis vinifera Xenopus tropicalis Zea mays Plasmodium falciparum

Arabidopsis thaliana Bos taurus Caenorhabditis elegans Canis familiaris Danio rerio Drosophila melanogaster Escherichia coli Equus caballus Gallus gallus Homo sapiens Mus musculus Mycobacterium tuberculosis Oryza sativa Pan troglodytes Populus trichocarpa Rattus norvegicus Saccharomyces cerevisiae Zea mays

PNG

Click on one of the links below to download all pathways in the Portable Network Graphics (png) format.

All pathways

Featured pathways

Unspecified Acetobacterium woodii Anopheles gambiae Arabidopsis thaliana Bacillus subtilis Beta vulgaris Brassica napus Bos taurus Caenorhabditis elegans Canis familiaris Clostridium thermocellum Caulobacter vibrioides Danio rerio Daphnia magna Daphnia pulex Drosophila melanogaster Escherichia coli Equus caballus Gallus gallus Glycine max Gibberella zeae Homo sapiens Hordeum vulgare Mus musculus Mycobacterium tuberculosis Oryza sativa Ovis aries Pan troglodytes Populus trichocarpa Rattus norvegicus Saccharomyces cerevisiae Solanum lycopersicum Sus scrofa Triticum aestivum Vitis vinifera Xenopus tropicalis Zea mays Plasmodium falciparum

Arabidopsis thaliana Bos taurus Caenorhabditis elegans Canis familiaris Danio rerio Drosophila melanogaster Escherichia coli Equus caballus Gallus gallus Homo sapiens Mus musculus Mycobacterium tuberculosis Oryza sativa Pan troglodytes Populus trichocarpa Rattus norvegicus Saccharomyces cerevisiae Zea mays

Flatfile

Click on one of the links below to download all pathways in either a tab-delimited or HTML table format. The output includes gene, protein and small molecule contents.

• Homo sapiens (tab, html)
• Mus Musculus (tab, html)
• Rattus norvegicus (tab, html)
• Drosophila melanogaster (tab, html)
• Caenorhabditis elegans (tab, html)
• Saccharomyces cerevisiae (tab, html)
• Danio rerio (tab, html)
• Arabidopsis thaliana (tab, html)
• Oryza japonica (tab, html)