Help:Guidelines EditorPalette

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==== Line / Arrow ====
==== Line / Arrow ====
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<b>Use cases:</b>  
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The solid line and arrow are used to denote a variety of processes, including <b>conversion</b>, <b>translocation</b>, <b>activation</b>, <b>binding</b> and <b>modification</b>.
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* Conversion
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* Translocation
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[[Image:Arrow.png|border|200px]]
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* Activation
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* Binding
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* Modification
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[[Image:DashedArrow.png|border|200px]]
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==== Dashed line / dashed arrow ====
==== Dashed line / dashed arrow ====
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<b>Use case:</b>
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The dashed line and arrow are used to denote an uncertain process or a process that involves additional steps not outlined in the current diagram.
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* Reactions that include additional steps that are not described in the pathway
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* Reactions that are not completely understood
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[[Image:DashedArrow.png|border|200px]]
[[Image:DashedArrow.png|border|200px]]
==== T-bar ====
==== T-bar ====
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<b>Use cases:</b>  
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The T-bar is used to denote <b>inhibition</b>.
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* Inhibition
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[[Image:T-bar.png|border|150px]]
[[Image:T-bar.png|border|150px]]

Revision as of 22:10, 25 March 2014


This guide describes the most common uses of various elements of the WikiPathways editor palette. Examples are taken directly from the WikiPathways archives. If you have questions about specific cases, contact the discussion mailing list.

Interactions

Basic set

Line / Arrow

The solid line and arrow are used to denote a variety of processes, including conversion, translocation, activation, binding and modification.


Dashed line / dashed arrow

The dashed line and arrow are used to denote an uncertain process or a process that involves additional steps not outlined in the current diagram.


T-bar

The T-bar is used to denote inhibition.


MIM set

The WikiPathways editor includes a set of MIM interaction types, based on the Molecular Interaction Maps notation.

Data nodes

Shapes

Basic shapes

Cellular components