From WikiPathways

Error rendering pathway page

This revision of the pathway probably contains invalid GPML code. If this happens to the most recent revision, try reverting the pathway using the pathway history displayed below or contact the site administrators (see WikiPathways:About) to resolve this problem.

Pathway history

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Compare	Revision	Action	Time	User	Comment
	118344	view	13:26, 27 May 2021	Eweitz	Ontology Term : 'homologous recombination pathway of double-strand break repair' added !
	80750	view	15:24, 30 June 2015	Mkutmon	homology conversion
	79845	view	07:17, 19 April 2015	Egonw	Replaced "Ensemble Cow" with "Ensembl".
	79164	view	05:18, 6 March 2015	MaintBot	Updated conversion from Hs
	67341	view	10:39, 26 June 2013	Christine Chichester	Ontology Term : 'homologous recombination pathway of double-strand break repair' added !
	63350	view	22:22, 9 May 2013	MaintBot	Updated to 2013 gpml schema
	58814	view	23:18, 20 February 2013	MaintBot	Updated Ensembl and UniProt data source
	40524	view	19:29, 1 March 2011	MaintBot	Removed redundant pathway information and comments
	36282	view	23:12, 17 March 2010	Khanspers	Modified categories
	35582	view	15:27, 12 February 2010	Thomas	Modified description
	35570	view	15:20, 12 February 2010	Thomas	added literature
	34760	view	23:30, 13 January 2010	Khanspers	Added connectors
	34759	view	23:28, 13 January 2010	Khanspers	Modified categories
	33766	view	00:05, 9 December 2009	MaintBot	Automatic update of empty xrefs
	31674	view	11:42, 14 August 2009	MaintBot	Fixed group labels
	30605	view	22:16, 29 July 2009	MaintBot	New pathway

Error details

exception 'Exception' with message 'Unable to convert to /var/www/wikipathways/images/e/e4/WP1036_31674.svg:
<BR>Status:1
<BR>Message:[     0.516] Info:  Recognized format [Namespace: prefix "" is mapped to URI "http://genmapp.org/GPML/2008a"]
[     0.798] Info:  Document is valid according to the xml schema definition 'GPML2008a.xsd'
Warn:  Reference to non existing biopax element found: fc6
Warn:  Reference to non existing biopax element found: f41
Warn:  Reference to non existing biopax element found: af4
Warn:  Reference to non existing biopax element found: def
Exception in thread "main" java.util.ConcurrentModificationException
	at java.util.ArrayList$Itr.checkForComodification(ArrayList.java:866)
	at java.util.ArrayList$Itr.next(ArrayList.java:838)
	at org.pathvisio.core.view.VPathway.fromModel(Unknown Source)
	at org.pathvisio.core.model.BatikImageExporter.doExport(Unknown Source)
	at org.pathvisio.core.Engine.exportPathway(Unknown Source)
	at org.pathvisio.core.util.Converter.main(Unknown Source)

<BR>Command:java -Xmx1024M -jar /var/www/wikipathways/wpi/bin/pathvisio_core.jar "/var/www/wikipathways/images/3/3e/WP1036_31674.gpml" "/var/www/wikipathways/images/e/e4/WP1036_31674.svg" 2>&1<BR>' in /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php:1255
Stack trace:
#0 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1227): Pathway::convertWithPathVisio('/var/www/wikipa...', '/var/www/wikipa...')
#1 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1137): Pathway->saveConvertedByPathVisioCache('svg')
#2 /var/www/wikipathways/wpi/extensions/Pathways/PathwayPage.php(21): Pathway->updateCache('svg')
#3 [internal function]: renderPathwayPage(Object(Parser), '<?xml version="...', Object(StripState))
#4 /var/www/wikipathways/includes/Hooks.php(125): call_user_func_array('renderPathwayPa...', Array)
#5 /var/www/wikipathways/includes/parser/Parser.php(318): wfRunHooks('ParserBeforeStr...', Array)
#6 /var/www/wikipathways/includes/Article.php(3406): Parser->parse('<?xml version="...', Object(Title), Object(ParserOptions), true, true, 31674)
#7 /var/www/wikipathways/includes/Article.php(875): Article->outputWikiText('<?xml version="...', false)
#8 /var/www/wikipathways/includes/Wiki.php(437): Article->view()
#9 /var/www/wikipathways/includes/Wiki.php(59): MediaWiki->performAction(Object(OutputPage), Object(Article), Object(Title), Object(User), Object(WebRequest))
#10 /var/www/wikipathways/index.php(93): MediaWiki->initialize(Object(Title), Object(Article), Object(OutputPage), Object(User), Object(WebRequest))
#11 {main}