From WikiPathways

Error rendering pathway page

This revision of the pathway probably contains invalid GPML code. If this happens to the most recent revision, try reverting the pathway using the pathway history displayed below or contact the site administrators (see WikiPathways:About) to resolve this problem.

Pathway history

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Compare	Revision	Action	Time	User	Comment
	116934	view	09:59, 16 May 2021	Eweitz	Modified title
	79391	view	20:07, 21 March 2015	Khanspers	Modified title
	79390	view	20:07, 21 March 2015	Khanspers	update schema
	79389	view	20:07, 21 March 2015	Khanspers	Reverted to version '10:40, 26 June 2013' by Khanspers
	70182	view	01:30, 13 July 2013	AlexanderPico	Modified title
	68706	view	21:31, 6 July 2013	MaintBot	Updated to 2013 gpml schema
	67343	view	10:40, 26 June 2013	Christine Chichester	Ontology Term : 'homologous recombination pathway of double-strand break repair' added !
	58863	view	00:18, 21 February 2013	MaintBot	Updated Ensembl and UniProt data source
	40874	view	22:33, 1 March 2011	MaintBot	Removed redundant pathway information and comments
	36290	view	23:17, 17 March 2010	Khanspers	Modified categories
	35584	view	15:27, 12 February 2010	Thomas	Modified description
	35572	view	15:21, 12 February 2010	Thomas	added literature
	31814	view	12:22, 14 August 2009	MaintBot	Fixed group labels
	30774	view	23:22, 29 July 2009	MaintBot	New pathway

Error details

exception 'Exception' with message 'Unable to convert to /var/www/wikipathways/images/d/d6/WP1205_31814.svg:
<BR>Status:1
<BR>Message:[     0.704] Info:  Recognized format [Namespace: prefix "" is mapped to URI "http://genmapp.org/GPML/2008a"]
[     1.078] Info:  Document is valid according to the xml schema definition 'GPML2008a.xsd'
Warn:  Reference to non existing biopax element found: fc6
Warn:  Reference to non existing biopax element found: f41
Warn:  Reference to non existing biopax element found: af4
Warn:  Reference to non existing biopax element found: def
Exception in thread "main" java.util.ConcurrentModificationException
	at java.util.ArrayList$Itr.checkForComodification(ArrayList.java:866)
	at java.util.ArrayList$Itr.next(ArrayList.java:838)
	at org.pathvisio.core.view.VPathway.fromModel(Unknown Source)
	at org.pathvisio.core.model.BatikImageExporter.doExport(Unknown Source)
	at org.pathvisio.core.Engine.exportPathway(Unknown Source)
	at org.pathvisio.core.util.Converter.main(Unknown Source)

<BR>Command:java -Xmx1024M -jar /var/www/wikipathways/wpi/bin/pathvisio_core.jar "/var/www/wikipathways/images/8/8a/WP1205_31814.gpml" "/var/www/wikipathways/images/d/d6/WP1205_31814.svg" 2>&1<BR>' in /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php:1255
Stack trace:
#0 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1227): Pathway::convertWithPathVisio('/var/www/wikipa...', '/var/www/wikipa...')
#1 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1137): Pathway->saveConvertedByPathVisioCache('svg')
#2 /var/www/wikipathways/wpi/extensions/Pathways/PathwayPage.php(21): Pathway->updateCache('svg')
#3 [internal function]: renderPathwayPage(Object(Parser), '<?xml version="...', Object(StripState))
#4 /var/www/wikipathways/includes/Hooks.php(125): call_user_func_array('renderPathwayPa...', Array)
#5 /var/www/wikipathways/includes/parser/Parser.php(318): wfRunHooks('ParserBeforeStr...', Array)
#6 /var/www/wikipathways/includes/Article.php(3406): Parser->parse('<?xml version="...', Object(Title), Object(ParserOptions), true, true, 31814)
#7 /var/www/wikipathways/includes/Article.php(875): Article->outputWikiText('<?xml version="...', false)
#8 /var/www/wikipathways/includes/Wiki.php(437): Article->view()
#9 /var/www/wikipathways/includes/Wiki.php(59): MediaWiki->performAction(Object(OutputPage), Object(Article), Object(Title), Object(User), Object(WebRequest))
#10 /var/www/wikipathways/index.php(93): MediaWiki->initialize(Object(Title), Object(Article), Object(OutputPage), Object(User), Object(WebRequest))
#11 {main}