HG_Shared_Pathway_CorrectIds_ (Homo sapiens)

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Revision as of 13:57, 12 August 2010 by Piet (Talk | contribs)
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Error rendering pathway page

This revision of the pathway probably contains invalid GPML code. If this happens to the most recent revision, try reverting the pathway using the pathway history displayed below or contact the site administrators (see WikiPathways:About) to resolve this problem.

Pathway history

View all...
CompareRevisionActionTimeUserComment
44548view09:56, 19 September 2011PietDeleted pathway: Obsolete
38113view13:57, 12 August 2010PietAdded ids
38112view13:53, 12 August 2010PietCreated complex
38111view13:40, 12 August 2010PietMinor font change
38110view13:34, 12 August 2010PietAdded complexes
38109view13:27, 12 August 2010PietPeriodical save, work in progress
38108view13:15, 12 August 2010PietPeriodical save, work in progress
38107view13:05, 12 August 2010PietPeriodical save, work in progress
38106view12:23, 12 August 2010PietCorrecting ids
38105view12:21, 12 August 2010PietPeriodical save, work in progress
38104view12:10, 12 August 2010PietPeriodical save, work in progress
38103view12:09, 12 August 2010Pietcorrecting ids
38102view12:00, 12 August 2010PietPeriodical save, work in progress
38101view11:48, 12 August 2010PietTemp save
38100view11:40, 12 August 2010PietCorrecting ids
38099view11:30, 12 August 2010PietPeriodical save, work in progress
38098view09:43, 12 August 2010PietPeriodical save, work in progress
38097view09:40, 12 August 2010PietRemoved colors, correcting ids
38096view09:14, 12 August 2010PietPeriodical save, work in progress
38095view09:03, 12 August 2010PietPeriodical save, work in progress
38086view15:43, 11 August 2010PietChanging receptors to appr geneids
38085view15:39, 11 August 2010PietPeriodical save, work in progress
38084view15:27, 11 August 2010PietNew pathway

Error details

exception 'Exception' with message 'Unable to convert to /var/www/wikipathways/images/d/d9/WP1594_44548.svg:
<BR>Status:254
<BR>Message:org.pathvisio.core.model.ConverterException: class org.jdom.input.JDOMParseException: Error on line 1: Content is not allowed in prolog.
	at org.jdom.input.SAXBuilder.build(SAXBuilder.java:504)
	at org.pathvisio.core.model.GpmlFormat.readFromXmlImpl(Unknown Source)
	at org.pathvisio.core.model.GpmlFormat.readFromXml(Unknown Source)
	at org.pathvisio.core.model.GpmlFormat.doImport(Unknown Source)
	at org.pathvisio.core.Engine.importPathway(Unknown Source)
	at org.pathvisio.core.util.Converter.main(Unknown Source)
Caused by: org.jdom.input.JDOMParseException: Error on line 1: Content is not allowed in prolog.
	... 6 more
Caused by: org.xml.sax.SAXParseException; lineNumber: 1; columnNumber: 1; Content is not allowed in prolog.
	at org.apache.xerces.util.ErrorHandlerWrapper.createSAXParseException(Unknown Source)
	at org.apache.xerces.util.ErrorHandlerWrapper.fatalError(Unknown Source)
	at org.apache.xerces.impl.XMLErrorReporter.reportError(Unknown Source)
	at org.apache.xerces.impl.XMLErrorReporter.reportError(Unknown Source)
	at org.apache.xerces.impl.XMLErrorReporter.reportError(Unknown Source)
	at org.apache.xerces.impl.XMLScanner.reportFatalError(Unknown Source)
	at org.apache.xerces.impl.XMLDocumentScannerImpl$PrologDispatcher.dispatch(Unknown Source)
	at org.apache.xerces.impl.XMLDocumentFragmentScannerImpl.scanDocument(Unknown Source)
	at org.apache.xerces.parsers.XML11Configuration.parse(Unknown Source)
	at org.apache.xerces.parsers.XML11Configuration.parse(Unknown Source)
	at org.apache.xerces.parsers.XMLParser.parse(Unknown Source)
	at org.apache.xerces.parsers.AbstractSAXParser.parse(Unknown Source)
	at org.apache.xerces.jaxp.SAXParserImpl$JAXPSAXParser.parse(Unknown Source)
	at org.jdom.input.SAXBuilder.build(SAXBuilder.java:489)
	... 5 more

<BR>Command:java -Xmx1024M -jar /var/www/wikipathways/wpi/bin/pathvisio_core.jar "/var/www/wikipathways/images/9/9a/WP1594_44548.gpml" "/var/www/wikipathways/images/d/d9/WP1594_44548.svg" 2>&1<BR>' in /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php:1255
Stack trace:
#0 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1227): Pathway::convertWithPathVisio('/var/www/wikipa...', '/var/www/wikipa...')
#1 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1137): Pathway->saveConvertedByPathVisioCache('svg')
#2 /var/www/wikipathways/wpi/extensions/Pathways/PathwayPage.php(21): Pathway->updateCache('svg')
#3 [internal function]: renderPathwayPage(Object(Parser), '<?xml version="...', Object(StripState))
#4 /var/www/wikipathways/includes/Hooks.php(125): call_user_func_array('renderPathwayPa...', Array)
#5 /var/www/wikipathways/includes/parser/Parser.php(318): wfRunHooks('ParserBeforeStr...', Array)
#6 /var/www/wikipathways/includes/Article.php(3406): Parser->parse('<?xml version="...', Object(Title), Object(ParserOptions), true, true, 38113)
#7 /var/www/wikipathways/includes/Article.php(875): Article->outputWikiText('<?xml version="...', false)
#8 /var/www/wikipathways/includes/Wiki.php(437): Article->view()
#9 /var/www/wikipathways/includes/Wiki.php(59): MediaWiki->performAction(Object(OutputPage), Object(Article), Object(Title), Object(User), Object(WebRequest))
#10 /var/www/wikipathways/index.php(93): MediaWiki->initialize(Object(Title), Object(Article), Object(OutputPage), Object(User), Object(WebRequest))
#11 {main}