Citrate cycle (TCA cycle) (Mycobacterium tuberculosis)

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Revision as of 21:11, 14 February 2011 by Madhun (Talk | contribs)
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Error rendering pathway page

This revision of the pathway probably contains invalid GPML code. If this happens to the most recent revision, try reverting the pathway using the pathway history displayed below or contact the site administrators (see WikiPathways:About) to resolve this problem.

Pathway history

View all...
CompareRevisionActionTimeUserComment
40202view18:02, 17 February 2011KhanspersDeleted pathway: delete requested by author
40173view21:11, 14 February 2011Madhun
40172view21:08, 14 February 2011Madhun
40171view21:05, 14 February 2011Madhun
40170view21:04, 14 February 2011MadhunSpecify description
40126view15:17, 11 February 2011Madhun
40125view03:54, 11 February 2011Madhun
40124view03:43, 11 February 2011MadhunPeriodical save, work in progress
40123view00:11, 11 February 2011Madhun
40122view00:10, 11 February 2011Madhun
40121view00:07, 11 February 2011MadhunPeriodical save, work in progress
40120view00:04, 11 February 2011Madhun
40119view00:03, 11 February 2011Madhun
40118view23:57, 10 February 2011MadhunPeriodical save, work in progress
40117view23:57, 10 February 2011Madhun
40116view23:52, 10 February 2011Madhun
40115view23:35, 10 February 2011Madhun
40114view23:33, 10 February 2011Madhun
40111view20:56, 10 February 2011Madhun1
40110view20:54, 10 February 2011Madhunnew
40109view20:49, 10 February 2011MadhunPeriodical save, work in progress
40108view20:37, 10 February 2011MadhunPeriodical save, work in progress
39472view21:25, 3 December 2010MadhunModified categories
39275view22:36, 9 November 2010AlexanderPicoModified categories
39031view22:26, 27 September 2010Madhun1
39030view22:25, 27 September 2010MadhunModified categories
39029view22:24, 27 September 2010Madhun1
39028view22:15, 27 September 2010Madhun1
39027view22:15, 27 September 2010Madhun1
39026view22:14, 27 September 2010Madhun1
39025view22:13, 27 September 2010Madhuntest
39024view22:00, 27 September 2010Madhun1
39023view21:59, 27 September 2010Madhun1
39022view21:53, 27 September 2010MadhunPeriodical save, work in progress
39021view21:46, 27 September 2010Madhun1
39020view21:43, 27 September 2010Madhun1
39019view21:37, 27 September 2010Madhun1
39018view21:33, 27 September 2010MadhunPeriodical save, work in progress
39017view21:13, 27 September 2010MadhunPeriodical save, work in progress
39016view21:07, 27 September 2010Madhun1
39015view20:30, 27 September 2010Madhuntest
39014view20:26, 27 September 2010MadhunNew pathway

Error details

exception 'Exception' with message 'Unable to convert to /var/www/wikipathways/images/f/f6/WP1723_40202.svg:
<BR>Status:254
<BR>Message:org.pathvisio.core.model.ConverterException: class org.jdom.input.JDOMParseException: Error on line 1: Content is not allowed in prolog.
	at org.jdom.input.SAXBuilder.build(SAXBuilder.java:504)
	at org.pathvisio.core.model.GpmlFormat.readFromXmlImpl(Unknown Source)
	at org.pathvisio.core.model.GpmlFormat.readFromXml(Unknown Source)
	at org.pathvisio.core.model.GpmlFormat.doImport(Unknown Source)
	at org.pathvisio.core.Engine.importPathway(Unknown Source)
	at org.pathvisio.core.util.Converter.main(Unknown Source)
Caused by: org.jdom.input.JDOMParseException: Error on line 1: Content is not allowed in prolog.
	... 6 more
Caused by: org.xml.sax.SAXParseException; lineNumber: 1; columnNumber: 1; Content is not allowed in prolog.
	at org.apache.xerces.util.ErrorHandlerWrapper.createSAXParseException(Unknown Source)
	at org.apache.xerces.util.ErrorHandlerWrapper.fatalError(Unknown Source)
	at org.apache.xerces.impl.XMLErrorReporter.reportError(Unknown Source)
	at org.apache.xerces.impl.XMLErrorReporter.reportError(Unknown Source)
	at org.apache.xerces.impl.XMLErrorReporter.reportError(Unknown Source)
	at org.apache.xerces.impl.XMLScanner.reportFatalError(Unknown Source)
	at org.apache.xerces.impl.XMLDocumentScannerImpl$PrologDispatcher.dispatch(Unknown Source)
	at org.apache.xerces.impl.XMLDocumentFragmentScannerImpl.scanDocument(Unknown Source)
	at org.apache.xerces.parsers.XML11Configuration.parse(Unknown Source)
	at org.apache.xerces.parsers.XML11Configuration.parse(Unknown Source)
	at org.apache.xerces.parsers.XMLParser.parse(Unknown Source)
	at org.apache.xerces.parsers.AbstractSAXParser.parse(Unknown Source)
	at org.apache.xerces.jaxp.SAXParserImpl$JAXPSAXParser.parse(Unknown Source)
	at org.jdom.input.SAXBuilder.build(SAXBuilder.java:489)
	... 5 more

<BR>Command:java -Xmx1024M -jar /var/www/wikipathways/wpi/bin/pathvisio_core.jar "/var/www/wikipathways/images/2/23/WP1723_40202.gpml" "/var/www/wikipathways/images/f/f6/WP1723_40202.svg" 2>&1<BR>' in /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php:1255
Stack trace:
#0 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1227): Pathway::convertWithPathVisio('/var/www/wikipa...', '/var/www/wikipa...')
#1 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1137): Pathway->saveConvertedByPathVisioCache('svg')
#2 /var/www/wikipathways/wpi/extensions/Pathways/PathwayPage.php(21): Pathway->updateCache('svg')
#3 [internal function]: renderPathwayPage(Object(Parser), '<?xml version="...', Object(StripState))
#4 /var/www/wikipathways/includes/Hooks.php(125): call_user_func_array('renderPathwayPa...', Array)
#5 /var/www/wikipathways/includes/parser/Parser.php(318): wfRunHooks('ParserBeforeStr...', Array)
#6 /var/www/wikipathways/includes/Article.php(3406): Parser->parse('<?xml version="...', Object(Title), Object(ParserOptions), true, true, 40173)
#7 /var/www/wikipathways/includes/Article.php(875): Article->outputWikiText('<?xml version="...', false)
#8 /var/www/wikipathways/includes/Wiki.php(437): Article->view()
#9 /var/www/wikipathways/includes/Wiki.php(59): MediaWiki->performAction(Object(OutputPage), Object(Article), Object(Title), Object(User), Object(WebRequest))
#10 /var/www/wikipathways/index.php(93): MediaWiki->initialize(Object(Title), Object(Article), Object(OutputPage), Object(User), Object(WebRequest))
#11 {main}