TCA cycle (Danio rerio)

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CytosolDegradation of fatty acidsElectron transport chaincontaining an even number of carbonscontaining an odd number of carbonsMitochondrionDegradation of fatty acidsAcetyl-CoAMDH1aaOGDHSuccinateL-malateFumaratezgc:112190aco2idh3adlatSDHDaFHPCSDHAPyruvateSDHBdldhzgc:86647PDK4sucla2OxaloacetateCitrateSUCLG2dlstPDK3bGluconeogenesisdldhSDHCFatty acid synthesisisocitrateAlpha-ketoglutaratePDHA2MDH2IDH2PDK2PDP2L-malateSUCLG1OxaloacetateSuccinyl-CoAPDHXcsPDHA1APDK1pdhbSDHDbMDH1abMDH1bPDHA1Bidh3bGlycolysis


Description

No description

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Quality Tags

Ontology Terms

 

Bibliography

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History

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CompareRevisionActionTimeUserComment
128709view22:18, 20 February 2024EgonwFixed a few datasources and made one interaction a mim-translation
127978view21:21, 20 January 2024EweitzModified description
127977view21:17, 20 January 2024EweitzRefine node size, consolidate text containers, fix case
127976view21:11, 20 January 2024EweitzIncrease font size: 10 -> 12
127975view21:08, 20 January 2024EweitzUse proper zebrafish gene names, standard on Ensembl IDs
127974view20:41, 20 January 2024EweitzUpdate metabolite node color to standard blue
127973view20:34, 20 January 2024EweitzUse proper zebrafish gene names, standardize to Ensembl IDs
127972view20:07, 20 January 2024EweitzRefine pathway representations, change low-contrast neon green to more visible orange
127971view19:57, 20 January 2024EweitzStandardize case
125413view06:32, 13 February 2023EgonwRemoved outdated 'last modified'
119952view11:08, 29 September 2021DdiglesChanged caffeine citrate back to citrate.
116911view11:48, 15 May 2021EweitzModified title
96499view06:47, 16 March 2018EgonwReplaced a secondary ChEBI identifier with a primary identifier.
96474view15:57, 15 March 2018SusanAnnotated metabolites
96468view15:48, 15 March 2018SusanConnected lines
91937view10:56, 6 April 2017LWackersAdded alpha and beta subunits of some genes, added annotations.
77409view22:42, 5 September 2014MaintBotremoved homology mapp label
71527view19:22, 17 October 2013MaintBotAutomated update of data sources
68660view05:17, 6 July 2013MaintBotUpdated to 2013 gpml schema
67684view11:49, 26 June 2013DdiglesOntology Term : 'citrate cycle pathway' added !
53545view21:19, 8 November 2012EgonwReplaced multiple general nodes by Metabolite DataNode's.
40831view22:18, 1 March 2011MaintBotRemoved redundant pathway information and comments
34217view21:33, 9 December 2009MaintBotAutomatic update of empty xrefs
20715view11:29, 14 November 2008MaintBot[[Pathway:Danio rerio:Krebs-TCA Cycle]] moved to [[Pathway:WP19]]: Moved to stable identifier
12044view08:45, 15 May 2008MaintBotAdded to category $category
19499view08:45, 15 May 2008N.FidelmanUploaded new pathway
12042view08:45, 15 May 2008KdahlquistUploaded new pathway

External references

DataNodes

View all...
NameTypeDatabase referenceComment
Acetyl-CoAMetaboliteCHEBI:15351 (ChEBI)
Alpha-ketoglutarateMetaboliteCHEBI:16810 (ChEBI)
CitrateMetaboliteCHEBI:133748 (ChEBI)
FHGeneProduct393938 (Entrez Gene)
Fatty acid synthesisPathway
FumarateMetaboliteCHEBI:18012 (ChEBI)
GluconeogenesisPathwayWP1356 (WikiPathways)
GlycolysisPathwayWP1356 (WikiPathways)
IDH2GeneProduct386951 (Entrez Gene)
L-malateMetaboliteCHEBI:15589 (ChEBI)
MDH1aaGeneProductENSDARG00000017772 (Ensembl)
MDH1abGeneProductENSDARG00000103849 (Ensembl)
MDH1bGeneProductENSDARG00000018008 (Ensembl)
MDH2GeneProduct406405 (Entrez Gene)
OGDHGeneProduct564552 (Entrez Gene)
OxaloacetateMetaboliteCHEBI:30744 (ChEBI)
PCGeneProduct58068 (Entrez Gene)
PDHA1AGeneProduct406702 (Entrez Gene)
PDHA1BGeneProductENSDARG00000010555 (Ensembl)
PDHA2GeneProduct
PDHXGeneProductENSDARG00000051756 (Ensembl)
PDK1GeneProductENSDARG00000013128 (Ensembl)
PDK2GeneProduct393971 (Entrez Gene)
PDK3bGeneProductENSDARG00000099791 (Ensembl)
PDK4GeneProductENSDARG00000054848 (Ensembl)
PDP2GeneProduct58149 (Entrez Gene)
PyruvateMetaboliteCHEBI:15361 (ChEBI)
SDHAGeneProduct393884 (Entrez Gene)
SDHBGeneProduct562149 (Entrez Gene)
SDHCGeneProductENSDARG00000038608 (Ensembl)
SDHDaGeneProductENSDARG00000055712 (Ensembl)
SDHDbGeneProductENSDARG00000030139 (Ensembl)
SUCLG1GeneProduct436850 (Entrez Gene)
SUCLG2GeneProduct317746 (Entrez Gene)
SuccinateMetaboliteCHEBI:30031 (ChEBI)
Succinyl-CoAMetaboliteCHEBI:15380 (ChEBI)
aco2GeneProduct322670 (Entrez Gene)
csGeneProduct322339 (Entrez Gene)
dlatGeneProduct324201 (Entrez Gene)
dldhGeneProduct399479 (Entrez Gene)
dlstGeneProduct368262 (Entrez Gene)
idh3aGeneProduct393926 (Entrez Gene)
idh3bGeneProductENSDARG00000044753 (Ensembl)
isocitrateMetaboliteCHEBI:16087 (ChEBI)
pdhbGeneProduct406428 (Entrez Gene)
sucla2GeneProduct406299 (Entrez Gene)
zgc:112190GeneProduct550408 (Entrez Gene)
zgc:86647GeneProduct415247 (Entrez Gene)

Annotated Interactions

No annotated interactions

Retrieved from "https://classic.wikipathways.org/index.php/Pathway:WP19"