Tissue fate map (Homo sapiens)
From WikiPathways
Description
Proposed lineage fate map focusing on (1) adult tissues, (2) fetal tissues, (3) terminally differentiated cells, (5) stem cells and (4) progenitor cells. This pathway is currently in progress but will ultimately be a hub to tissue and cell type specific pathways (nodes converted to pathway nodes).
How to Use
This network is most useful when viewed in Cytoscape with corresponding cell/tissue association data. To use, simply save the GPML and open in Cytoscape (File > Import > Network (Multiple File Types)...) and change the visual style of the pathway to one of the default options under VizMapper > Current Visual Style or load this specific VisualStyle: http://altanalyze.org/TissueFateMap-VizMapperProperty.props. To visualize tissue/cell association data, load an attribute file with corresponding tissue/cell names (e.g., from AltAnalyze's TissueMapper software) using File > Import > Node Attributes (mapping the tissue column to CanonicalName) and set your coloring parameters from VizMapper > Node Color.Quality Tags
Ontology Terms
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History
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External references
DataNodes
| View all... |
| Name | Type | Database reference | Comment |
|---|---|---|---|
| Accumbens | |||
| Adipocyte Progenitor | |||
| Adipocytes | |||
| Adipose Tissue | |||
| Adrenal Cortex | |||
| Adrenal Gland | |||
| Allantois | |||
| Amygdala | |||
| Anal Canal | |||
| Aorta Smooth Muscle Cells | |||
| Aorta | |||
| Appendage Muscles | |||
| Appendecular Skeleton | |||
| Arm Muscle | |||
| Astrocyte Progenitor | |||
| Astrocytes | |||
| Atrium | |||
| Auditory Vescicle | |||
| Axial Skeleton | |||
| B Cells | |||
| Blastocyst | Blastocyst (Uniprot/TrEMBL)  | ||
| Blood Corpuscles | |||
| Blood Vessels | |||
| Blood | |||
| Bone Marrow Hematopoietic Progenitors | |||
| Bone Marrow Mesenchymal Stem Cells | |||
| Bone Marrow Stem Cells | |||
| Bone Marrow | |||
| Bone | |||
| Brain | |||
| Breast | |||
| Bronchi | |||
| Brown Adipose | |||
| CD14+ | |||
| CD19+ | |||
| CD34+ | |||
| CD4+ | |||
| CD71+ | |||
| CD8+ | |||
| Cardiac Fibroblast Progenitor | |||
| Cardiac Fibroblasts | |||
| Cardiac Progenitor | |||
| Cardiomyocytes | |||
| Caudate | |||
| Cephalic Connective tissue | |||
| Cerebellar Hemisphere | |||
| Cerebellar Vermis | |||
| Cerebellum | |||
| Cerebral Cortex | |||
| Cervix | |||
| Cholinergic Progenitor | |||
| Cholinergic | |||
| Chondrocytes | |||
| Chorion | Chorion (Uniprot/TrEMBL) | ||
| Colon Cecum | |||
| Colon | |||
| Connective Tissue Layers of Skin | |||
| Connective Tissue | |||
| Coronary Artery | |||
| Corpus Callosum | |||
| Cortex | |||
| Crainial Motor Nerves | |||
| Cranial Sensory Ganglia and Nerves | |||
| Cytotrophoblast | Cytotrophoblast (Uniprot/TrEMBL) | ||
| Deltoid Muscle | |||
| Dentin of Teeth | |||
| Dermal Progenitor | |||
| Dermal Stem Cell | |||
| Dermatomes | |||
| Digestive Tube | |||
| Dopaminergic Progenitor | |||
| Dopaminergic | |||
| Dorsal Root Ganglia | |||
| Dorsal-Paraxial Mesoderm | |||
| Dorsolateral Prefrontal Neocortex | |||
| Duodenum | |||
| Early Endoderm Progenitor | Early Endoderm Progenitor (Uniprot/TrEMBL) | ||
| Early First Trimester | Early First Trimester (Uniprot/TrEMBL) | ||
| Ectoderm Progenitor | Ectoderm Progenitor (Uniprot/TrEMBL) | ||
| Embryo | Embryo (Uniprot/TrEMBL) | ||
| Embryonic Fibroblasts | |||
| Endocardium | |||
| Endoderm Progenitor | Endoderm Progenitor (Uniprot/TrEMBL) | ||
| Endoderm | Endoderm (Uniprot/TrEMBL) | ||
| Endometrium | |||
| Endothelial Cells | |||
| Endothelium of Blood Vessels | |||
| Epicardium | |||
| Epididymal Adipose | |||
| Epididymis | |||
| Epimyocardium | |||
| Epithelial Cells | |||
| Erythroblast Progenitor | |||
| Erythrocytes | |||
| Esophagus | |||
| Eye Lens | |||
| Fallopian Tube | |||
| Fetal Adrenal Cortex | |||
| Fetal Arm Muscle | |||
| Fetal Brain | |||
| Fetal Heart | |||
| Fetal Kidney Renal Cortex | |||
| Fetal Kidney Renal Pelvis | |||
| Fetal Kidney | |||
| Fetal Large Intestine | |||
| Fetal Leg Muscle | |||
| Fetal Liver | |||
| Fetal Lungs | |||
| Fetal Pancreas | |||
| Fetal Skeletal Muscle | |||
| Fetal Small Intestine | |||
| Fetal Spinal Cord | Fetal Spinal Cord (Uniprot/TrEMBL) | ||
| Fetal Thymus | |||
| Fetal Thyroid | |||
| Fetus | Fetus (Uniprot/TrEMBL) | ||
| Fibroblasts | |||
| Forebrain | |||
| Frontal Cortex | |||
| Frontal Lobe | |||
| GABAergic Progenitor | |||
| GABAergic | |||
| Glial Cells | |||
| Globus Pallidus | |||
| Gloubus Pallidum External | |||
| Gloubus Pallidum Internal | |||
| Glutamatergic Progenitor | |||
| Glutamatergic | |||
| Granulocytes | |||
| Hair | |||
| Head Mesenchyme | |||
| Head Muscles | |||
| Heart | |||
| Hemangioblast Tissue | |||
| Hemangioblastic Stem Cells | |||
| Hematopoietic Progenitor | |||
| Hepatoblasts | |||
| Hepatocytes | |||
| Hindbrain | |||
| Hippocampus | |||
| Hypophysis Anteriror Lobe | |||
| Hypothalamus | |||
| Induced Pluripotent Stem Cells | Induced Pluripotent Stem Cells (Uniprot/TrEMBL) | ||
| Islet Cells | |||
| Itermediate Mesoderm | |||
| Jejunum | |||
| Joint Tissue Synovium | |||
| Keratinocytes | |||
| Kidney Cortex | |||
| Kidney Medulla | |||
| Kidney | |||
| Large Intestine | |||
| Late First Trimester | Late First Trimester (Uniprot/TrEMBL) | ||
| Lateral Mesoderm | |||
| Left Atrium | |||
| Left Ventricle | |||
| Leg Muscle | |||
| Liver Hematopoietic Stem Cells | |||
| Liver | |||
| Lungs | |||
| Lymph Nodes | |||
| Lymphoid Progentior | |||
| Macrophages | |||
| Mammary Glands | |||
| Medial Prefrontal Neocortex | |||
| Mediodorsal Thalamus | |||
| Medulla of Adrenal | |||
| Medulla | |||
| Megakaryocyte | |||
| Melanocyte | |||
| Mesenchymal Stem Cells | |||
| Mesenchyme | |||
| Mesendoderm | Mesendoderm (Uniprot/TrEMBL) | ||
| Mesentaries | |||
| Mesoderm Progenitor | Mesoderm Progenitor (Uniprot/TrEMBL) | ||
| Mesonephric Ducts | |||
| Microglia | |||
| Midbrain | |||
| Middle First Trimester | Middle First Trimester (Uniprot/TrEMBL) | ||
| Middle ear | |||
| Monocytes | |||
| Morula | Morula (Uniprot/TrEMBL) | ||
| Motor Somatosensory Neocortex | |||
| Mullerian Ducts | |||
| Muscle | |||
| Myeloid Progenitor | |||
| Myoblast | |||
| Myocardium | |||
| Myometrium | |||
| Myotomes | |||
| Myotube | |||
| NK Cells | |||
| Nails | |||
| Nasal-Olfactory Epithelium | |||
| Neural Crest Mesenchymal Stem Cells | |||
| Neural Crest Stem Cells | |||
| Neural Crest | |||
| Neural Progenitor | |||
| Neural Stem Cells | |||
| Neural Tube | |||
| Nipple | |||
| Nodose Nucleus | |||
| Occipital Lobe | |||
| Occipital Visual Neocortex | |||
| Oligodendrocyte Progenitor | |||
| Oligodendrocytes | |||
| Omental Adipose | |||
| Oocytes | |||
| Optic Nerve | |||
| Oral Epithelium | |||
| Oral Mucosa | |||
| Orbital Prefrontal Neocortex | |||
| Osteoblasts | |||
| Outer Epithelium of Body | |||
| Outer Layers of Eye | |||
| Ovaries | |||
| Oviducts | |||
| Pancreas | |||
| Parathyroids | |||
| Parietal Association Neocortex | |||
| Parietal Lobe | |||
| Pars Neuralis of Hypophysis | |||
| Partially Reprogrammed iPS Cells | Partially Reprogrammed iPS Cells (Uniprot/TrEMBL) | ||
| Pathway | |||
| Penis | |||
| Pericardium | |||
| Peritoneum | |||
| Perivascular Adipose | |||
| Pharyngeal Mucosa | |||
| Pharyngeal Pouches | |||
| Pharynx | |||
| Photoreceptor Cells | |||
| Pituitary Gland | |||
| Placenta | |||
| Pleura | |||
| Pluripotent Stem Cells | Pluripotent Stem Cells (Uniprot/TrEMBL) | ||
| Pons | |||
| Prefrontal Cortex | |||
| Primitive Gut | |||
| Primordial Germ Cells | |||
| Prostate Gland | |||
| Prostate | |||
| Putamen | |||
| Retina Ganglion Cells | |||
| Retina Inner Nuclear Cells | |||
| Retina Inner Plexiform Cells | |||
| Retina | |||
| Retrocervical Infiltrate | |||
| Right Atrium | |||
| Right Ventricle | |||
| Salivary Gland | |||
| Saphenous Vein | |||
| Schwann Cell Progenitor | |||
| Schwann Cells | |||
| Scleroteomes | |||
| Sebacious Glands | |||
| Second Trimester | Second Trimester (Uniprot/TrEMBL) | ||
| Sensory Sinal Nerve Roots | |||
| Serotonergic Progenitor | |||
| Serotonergic | |||
| Skeletal Muscle | |||
| Skin | |||
| Skull and Branchial Cartilages | |||
| Small Intestine | |||
| Smooth Muscle Cells | |||
| Somatic Mesoderm | |||
| Spermatogonial Stem Cells | |||
| Spinal Cord | |||
| Spinal Dorsal Root Ganglia | |||
| Splanchnic Mesoderm | |||
| Spleen | |||
| Stomach Cardiac | |||
| Stomach Fundus | |||
| Stomach Pyloric | |||
| Stomach | |||
| Stomodaeal Epithelium | |||
| Striatum Putamen and Caudate Nucleus | |||
| Stroma of Gonads | |||
| Subcortical | |||
| Subcutaneous Adipose | |||
| Substantia Nigra Pars Compacta | |||
| Substantia Nigra Reticulata | |||
| Substantia Nigra | |||
| Subthalamic Nucleus | |||
| Sweat Glands | |||
| Sympathetic Ganglia | |||
| Syncytiotrophoblast | Syncytiotrophoblast (Uniprot/TrEMBL) | ||
| Synovial Membrane | |||
| T Cells | |||
| Teeth Enamel | |||
| Temporal Association Cortex | |||
| Temporal Auditory Neocortex | |||
| Temporal Lobe | |||
| Testes | |||
| Thalamus Lateral Nuclei | |||
| Thalamus Subthalamic Nucleus | |||
| Thalamus | |||
| Thymocyte | |||
| Thymocytes | |||
| Thymus | |||
| Thyroid | |||
| Tongue Main Corpus | |||
| Tongue Superior With Papillae | |||
| Tongue | |||
| Tonsil | |||
| Tonsillar Recesses | |||
| Trachea | |||
| Trigeminal Ganglia | |||
| Trophoectoderm Stem Cells | Trophoectoderm Stem Cells (Uniprot/TrEMBL) | ||
| Trophoectoderm | Trophoectoderm (Uniprot/TrEMBL) | ||
| Urethra | |||
| Urinary Bladder | |||
| Uterus | |||
| Vagina | |||
| Vas Deferens | |||
| Vena Cava | |||
| Ventral Mesoderm | |||
| Ventral Tegmental Area | |||
| Ventricle | |||
| Ventrolateral Prefrontal Neocortex | |||
| Vestibular Nuclei Superior | |||
| Viscera | |||
| Visceral Peritoneum | |||
| Visceral Pleura | |||
| Visual Cortex | |||
| Vulva | |||
| White Adipose | |||
| Zygote | Zygote (Uniprot/TrEMBL) |
Annotated Interactions
No annotated interactions
