TNF-alpha signaling pathway (Homo sapiens)

From WikiPathways

Revision as of 19:39, 29 April 2010 by Khanspers (Talk | contribs)
Jump to: navigation, search
Enzyme complexCY ->NUReaction through unknown mechanisms/moleculesProteins in a complex interactionDemethylationCY ->NUEndosomeDephosphorylationActivationMitochondrionAccession Number: NetPath 9; cellmap:9Endoplasmic reticulumCY ->NUUbiquitinationECERMolecular associationPalmitoylationAutophosphorylationCY ->NUNucleusCY ->NUDeacetylationCYGOMethylationENDeubiquitinationGlycosylationPMMTCytoplasmAcetylationRecruitmentTranslocation(Protein-protein interaction)DReceptorDesumoylationSumoylationInhibitionProteolytic cleavagePhosphorylationGolgi apparatusControlPlasma membraneExtracellularMolecule in the pathwayLigandNUDDX3CUL1NR2C2CSNK2BRPS13NFKBIZTXLNAPSMD13RELTNFRSF8CASP10PIAS3RASAL2TRAF1RELAPRKACAGAB1TBKBP1BAG4RPS6KB1RIPK2ASE1TRAF4PSMC2SMARCC2MARK2NFKB1RIPK1TBK1YWHAEMAP3K3TNFTRAF1RIPK3CDC34FKBP5NFKBIATNFRSF11ACHUKCSNK2A2YWHABCOPS3BCL7APRKCZTNFALPLGeneUNC5CLTNIP1LRPPRCNFKB1MAP3K7IP2TNFYWHAZTRADDUSP11PTPN11TNFRSF1ARELATAB3SMARCA4FANCD2RNF25TNFAIP3CASP8AP2POLR1BRPL8IKBKEHSP90AB1TNFRSF1BCASP3HDAC2CAV1TANKDPF2PTK2MAP3K7IP1CASP2GNB2L1YWHAGPMLMEKK2NFKB1BCL3SRCRELACASP8RELAHIST3H3UBCH5BIKBKGGTF2ITNFRSF1BCSNK2A1NFKBIARPS11KPNA2NFKBIEG3BP2TRAIPKCNQ1COMMD1HDAC1MAP3K14AKT1PEG3PRAF1IKBKBTNFRSF1AMTIF2Gene SymbolAZI2TNFHDAC6GenePSMD1PSMC3WDR68GeneGSK3BRPL4NALP4FBLTRAF4MAP3K8TNFRSF1AYWHAHPPP2CABIRC2PFDN2IQGAP2TNFRELBUBCH5CMAP3K1SMARCE1PSMD12FLNAACTL6ASUMO1PSMC1PSMD6MCM5RELRELBBTRCAKAP8SMARCB1TRAF2NFKBIARPL6IKBKAPT2BPPDCD2MAP2K5TBK1TRAF6TRADDTRPC4APTNFRSF1BCREBBPNFKB2SMARCC1PPP1R13LZA20D2TRAF3AKT2KTN1MAP3K3CHUKPEBP1UBE2IPOLR2LNFKBIBSTAT1FAF1RPL30TNFPSMB5MCM7IKBKGGLG1NKIRAS1BIRC2POLR1ATRIAD3FADDDAPYWHAQSKP1ACYLDCAPN3KPNA3POLRY2HPSMD7POLR1DPSMD3PAPOLACFLARDBC1FBXW11CRADDGeneMCCNSMAFPKN1CASP7TRAF5NKIRAS2POLR1CRPS6KA5BIRC3HSPB1HSP90AA1TRAF2TNIP2RIPK1KPNA6USP2TRAF2CDC37NR2C2BIRC3


Description

"The Tumor Necrosis Factor alpha is a proinflammatory cytokine belonging to the TNF superfamily. It signals through 2 separate receptors - TNFRSF1A and TNFRSF1B, both members of the TNF receptor superfamily. Activation by the homotrimeric ligand results in receptor trimerization. TNFRSF1A trimers result in the activation of NF-kB through MAPK and caspase pathways leading to apoptosis, whereas a heterocomplex of both TNFRSF1A and TNFRSF1B recruits proteins such as BIRC2 and BIRC3, which are apoptotic inhibitors. As both TNF alpha and IL-1 stimulate the MAPK signaling module and activate NFkB, they are synergistic and complement each other's activity." Source: http://www.netpath.org/pathways?path_id=NetPath_9

Comments

GenMAPP notes 
NetPath 9 ; cellmap:9 - TNF-alpha/NF-kB Signaling Pathway This cancer signaling pathway is available at Cancer Cell Map (http://cancer.cellmap.org) and NetPath (http://www.netpath.org) and is part of a collaborative project between the Computational Biology Center at Memorial Sloan-Kettering Cancer Center (http://cbio.mskcc.org), PandeyLab at Johns Hopkins University (http://pandeylab.igm.jhmi.edu) and Institute of Bioinformatics (http://www.ibioinformatics.org). If you use this pathway, you must cite the Cancer Cell Map and NetPath websites until the pathway is published.
GenMAPP remarks 
http://cancer.cellmap.org; http://www.netpath.org

Try the New WikiPathways

View approved pathways at the new wikipathways.org.

Quality Tags

Ontology Terms

 

Bibliography

No bibliography


History

View all...
CompareRevisionActionTimeUserComment
124583view05:13, 13 November 2022EgonwRemoved outdated license info: all CCZero now
124582view05:11, 13 November 2022EgonwConverted a label ("ROS") to a metabolite node with identifier
120699view13:12, 23 December 2021EweitzStandardize font, weight, case
116472view10:16, 7 May 2021EweitzModified title
111053view14:57, 3 July 2020L DupuisConverted interactions to graphical lines in legend
105836view23:09, 15 August 2019KhanspersModified description
89895view13:10, 6 October 2016EgonwModified description
81070view19:14, 19 July 2015EgonwAdded three missing ChEBI metabolite IDs.
79942view08:40, 28 April 2015Zariadded annotation for RAS
79280view22:53, 19 March 2015ZariAdded Identifier for SELE,CCL2 and NOXO1
78500view10:28, 7 January 2015MaintBotadded missing graphIds
72093view21:34, 24 October 2013Mkutmonadded datasource to "TNF"
71708view20:00, 17 October 2013MaintBotremoved data source from nodes without identifier
70103view18:53, 12 July 2013MaintBotupdated to 2013 schema
67700view11:51, 26 June 2013DdiglesOntology Term : 'tumor necrosis factor mediated signaling pathway' added !
47978view14:38, 23 April 2012NetPathModified description
44640view18:30, 22 September 2011Khanspersadded description
44639view18:29, 22 September 2011KhanspersModified categories
44638view18:29, 22 September 2011KhanspersUpdating content to NetSlim
41210view23:44, 1 March 2011MaintBotRemoved redundant pathway information and comments
36762view19:39, 29 April 2010Khansperstest
35303view23:33, 11 February 2010NsalomonisModified description
32365view13:44, 15 August 2009MaintBotFixed text labels
32004view13:18, 14 August 2009MaintBotFixed group labels
28972view11:00, 19 March 2009EveloSpecify description
28971view10:54, 19 March 2009EveloJus alignments
28970view10:42, 19 March 2009Evelocleaned up a bit
28911view08:09, 12 March 2009AlexanderPicoconnecting edges
28908view07:04, 12 March 2009AlexanderPicoconnecting edges
28907view06:23, 12 March 2009AlexanderPicoconnecting edges
28906view05:04, 12 March 2009Burakconnected the edges
28905view04:54, 12 March 2009BurakPeriodical save, work in progress
21163view11:30, 14 November 2008MaintBot[[Pathway:Homo sapiens:TNF-alpha-NF-kB NetPath 9]] moved to [[Pathway:WP231]]: Moved to stable identifier
8446view13:46, 7 January 2008MaintBot[[Pathway:Human:TNF-alpha-NF-kB NetPath 9]] moved to [[Pathway:Homo sapiens:TNF-alpha-NF-kB NetPath 9]]: Renaming species
7839view16:21, 18 December 2007MaintBotfixed category names
7307view12:42, 4 November 2007MaintBotAdded categories to GPML
6399view22:18, 22 May 2007A.Pandeygpml file for [[Human:TNF-alpha-NF-kB_NetPath_9]]

External references

DataNodes

View all...
NameTypeDatabase referenceComment
ACTL6AGeneProduct86 (Entrez Gene)
AKAP8GeneProduct10270 (Entrez Gene)
AKT1GeneProduct207 (Entrez Gene)
AKT2GeneProduct208 (Entrez Gene)
ALPLGeneProduct249 (Entrez Gene)
ASE1GeneProduct10849 (Entrez Gene)
AZI2GeneProduct64343 (Entrez Gene)
BAG4GeneProduct9530 (Entrez Gene)
BCL3GeneProduct602 (Entrez Gene)
BCL7AGeneProduct803 (Entrez Gene)
BIRC2GeneProduct329 (Entrez Gene)
BIRC3GeneProduct330 (Entrez Gene)
BTRCGeneProduct8945 (Entrez Gene)
CAPN3GeneProduct825 (Entrez Gene)
CASP10GeneProduct843 (Entrez Gene)
CASP2GeneProduct835 (Entrez Gene)
CASP3GeneProduct836 (Entrez Gene)
CASP7GeneProduct840 (Entrez Gene)
CASP8GeneProduct841 (Entrez Gene)
CASP8AP2GeneProduct9994 (Entrez Gene)
CAV1GeneProduct857 (Entrez Gene)
CDC34GeneProduct997 (Entrez Gene)
CDC37GeneProduct11140 (Entrez Gene)
CFLARGeneProduct8837 (Entrez Gene)
CHUKGeneProduct1147 (Entrez Gene)
COMMD1GeneProduct150684 (Entrez Gene)
COPS3GeneProduct8533 (Entrez Gene)
CRADDGeneProduct8738 (Entrez Gene)
CREBBPGeneProduct1387 (Entrez Gene)
CSNK2A1GeneProduct1457 (Entrez Gene)
CSNK2A2GeneProduct1459 (Entrez Gene)
CSNK2BGeneProduct1460 (Entrez Gene)
CUL1GeneProduct8454 (Entrez Gene)
CYLDGeneProduct1540 (Entrez Gene)
DAPGeneProduct1611 (Entrez Gene)
DBC1GeneProduct57805 (Entrez Gene)
DDX3GeneProduct1654 (Entrez Gene)
DPF2GeneProduct5977 (Entrez Gene)
FADDGeneProduct8772 (Entrez Gene)
FAF1GeneProduct11124 (Entrez Gene)
FANCD2GeneProduct2177 (Entrez Gene)
FBLGeneProduct2091 (Entrez Gene)
FBXW11GeneProduct23291 (Entrez Gene)
FKBP5GeneProduct2289 (Entrez Gene)
FLNAGeneProduct2316 (Entrez Gene)
G3BP2GeneProduct9908 (Entrez Gene)
GAB1GeneProduct2549 (Entrez Gene)
GLG1GeneProduct2734 (Entrez Gene)
GNB2L1GeneProduct10399 (Entrez Gene)
GSK3BGeneProduct2932 (Entrez Gene)
GTF2IGeneProduct2969 (Entrez Gene)
GeneGeneProduct
Gene SymbolGeneProduct
HDAC1GeneProduct3065 (Entrez Gene)
HDAC2GeneProduct3066 (Entrez Gene)
HDAC6GeneProduct10013 (Entrez Gene)
HIST3H3GeneProduct8290 (Entrez Gene)
HSP90AA1GeneProduct3320 (Entrez Gene)
HSP90AB1GeneProduct3326 (Entrez Gene)
HSPB1GeneProduct3315 (Entrez Gene)
IKBKAPGeneProduct8518 (Entrez Gene)
IKBKBGeneProduct3551 (Entrez Gene)
IKBKEGeneProduct9641 (Entrez Gene)
IKBKGGeneProduct8517 (Entrez Gene)
IQGAP2GeneProduct10788 (Entrez Gene)
KCNQ1GeneProduct3784 (Entrez Gene)
KPNA2GeneProduct3838 (Entrez Gene)
KPNA3GeneProduct3839 (Entrez Gene)
KPNA6GeneProduct23633 (Entrez Gene)
KTN1GeneProduct3895 (Entrez Gene)
LRPPRCGeneProduct10128 (Entrez Gene)
MAP2K5GeneProduct5607 (Entrez Gene)
MAP3K1GeneProduct4214 (Entrez Gene)
MAP3K14GeneProduct9020 (Entrez Gene)
MAP3K3GeneProduct4215 (Entrez Gene)
MAP3K7IP1GeneProduct10454 (Entrez Gene)
MAP3K7IP2GeneProduct23118 (Entrez Gene)
MAP3K8GeneProduct1326 (Entrez Gene)
MARK2GeneProduct2011 (Entrez Gene)
MCCGeneProduct4163 (Entrez Gene)
MCM5GeneProduct4174 (Entrez Gene)
MCM7GeneProduct4176 (Entrez Gene)
MEKK2GeneProduct10746 (Entrez Gene)
MTIF2GeneProduct4528 (Entrez Gene)
NALP4GeneProduct147945 (Entrez Gene)
NFKB1GeneProduct4790 (Entrez Gene)
NFKB2GeneProduct4791 (Entrez Gene)
NFKBIAGeneProduct4792 (Entrez Gene)
NFKBIBGeneProduct4793 (Entrez Gene)
NFKBIEGeneProduct4794 (Entrez Gene)
NFKBIZGeneProduct64332 (Entrez Gene)
NKIRAS1GeneProduct28512 (Entrez Gene)
NKIRAS2GeneProduct28511 (Entrez Gene)
NR2C2GeneProduct7182 (Entrez Gene)
NSMAFGeneProduct8439 (Entrez Gene)
PAPOLAGeneProduct10914 (Entrez Gene)
PDCD2GeneProduct5134 (Entrez Gene)
PEBP1GeneProduct5037 (Entrez Gene)
PEG3GeneProduct5178 (Entrez Gene)
PFDN2GeneProduct5202 (Entrez Gene)
PIAS3GeneProduct10401 (Entrez Gene)
PKN1GeneProduct5585 (Entrez Gene)
PMLGeneProduct5371 (Entrez Gene)
POLR1AGeneProduct25885 (Entrez Gene)
POLR1BGeneProduct84172 (Entrez Gene)
POLR1CGeneProduct9533 (Entrez Gene)
POLR1DGeneProduct51082 (Entrez Gene)
POLR2LGeneProduct5441 (Entrez Gene)
POLRY2HGeneProduct5437 (Entrez Gene)
PPP1R13LGeneProduct10848 (Entrez Gene)
PPP2CAGeneProduct5515 (Entrez Gene)
PRAF1GeneProduct64425 (Entrez Gene)
PRKACAGeneProduct5566 (Entrez Gene)
PRKCZGeneProduct5590 (Entrez Gene)
PSMB5GeneProduct5693 (Entrez Gene)
PSMC1GeneProduct5700 (Entrez Gene)
PSMC2GeneProduct5701 (Entrez Gene)
PSMC3GeneProduct5702 (Entrez Gene)
PSMD12GeneProduct5718 (Entrez Gene)
PSMD13GeneProduct5719 (Entrez Gene)
PSMD1GeneProduct5707 (Entrez Gene)
PSMD3GeneProduct5709 (Entrez Gene)
PSMD6GeneProduct9861 (Entrez Gene)
PSMD7GeneProduct5713 (Entrez Gene)
PTK2GeneProduct5747 (Entrez Gene)
PTPN11GeneProduct5781 (Entrez Gene)
RASAL2GeneProduct9462 (Entrez Gene)
RELGeneProduct5966 (Entrez Gene)
RELAGeneProduct5970 (Entrez Gene)
RELBGeneProduct5971 (Entrez Gene)
RIPK1GeneProduct8737 (Entrez Gene)
RIPK2GeneProduct8767 (Entrez Gene)
RIPK3GeneProduct11035 (Entrez Gene)
RNF25GeneProduct64320 (Entrez Gene)
RPL30GeneProduct6156 (Entrez Gene)
RPL4GeneProduct6124 (Entrez Gene)
RPL6GeneProduct6128 (Entrez Gene)
RPL8GeneProduct6132 (Entrez Gene)
RPS11GeneProduct6205 (Entrez Gene)
RPS13GeneProduct6207 (Entrez Gene)
RPS6KA5GeneProduct9252 (Entrez Gene)
RPS6KB1GeneProduct6198 (Entrez Gene)
SKP1AGeneProduct6500 (Entrez Gene)
SMARCA4GeneProduct6597 (Entrez Gene)
SMARCB1GeneProduct6598 (Entrez Gene)
SMARCC1GeneProduct6599 (Entrez Gene)
SMARCC2GeneProduct6601 (Entrez Gene)
SMARCE1GeneProduct6605 (Entrez Gene)
SRCGeneProduct6714 (Entrez Gene)
STAT1GeneProduct6772 (Entrez Gene)
SUMO1GeneProduct7341 (Entrez Gene)
T2BPGeneProduct92610 (Entrez Gene)
TAB3GeneProduct257397 (Entrez Gene)
TANKGeneProduct10010 (Entrez Gene)
TBK1GeneProduct29110 (Entrez Gene)
TBKBP1GeneProduct9775 (Entrez Gene)
TNFGeneProduct7124 (Entrez Gene)
TNFAIP3GeneProduct7128 (Entrez Gene)
TNFRSF11AGeneProduct8792 (Entrez Gene)
TNFRSF1AGeneProduct7132 (Entrez Gene)
TNFRSF1BGeneProduct7133 (Entrez Gene)
TNFRSF8GeneProduct943 (Entrez Gene)
TNIP1GeneProduct10318 (Entrez Gene)
TNIP2GeneProduct79155 (Entrez Gene)
TRADDGeneProduct8717 (Entrez Gene)
TRAF1GeneProduct7185 (Entrez Gene)
TRAF2GeneProduct7186 (Entrez Gene)
TRAF3GeneProduct7187 (Entrez Gene)
TRAF4GeneProduct9618 (Entrez Gene)
TRAF5GeneProduct7188 (Entrez Gene)
TRAF6GeneProduct7189 (Entrez Gene)
TRAIPGeneProduct10293 (Entrez Gene)
TRIAD3GeneProduct54476 (Entrez Gene)
TRPC4APGeneProduct26133 (Entrez Gene)
TXLNAGeneProduct200081 (Entrez Gene)
UBCH5BGeneProduct7322 (Entrez Gene)
UBCH5CGeneProduct7323 (Entrez Gene)
UBE2IGeneProduct7329 (Entrez Gene)
UNC5CLGeneProduct222643 (Entrez Gene)
USP11GeneProduct8237 (Entrez Gene)
USP2GeneProduct9099 (Entrez Gene)
WDR68GeneProduct10238 (Entrez Gene)
YWHABGeneProduct7529 (Entrez Gene)
YWHAEGeneProduct7531 (Entrez Gene)
YWHAGGeneProduct7532 (Entrez Gene)
YWHAHGeneProduct7533 (Entrez Gene)
YWHAQGeneProduct10971 (Entrez Gene)
YWHAZGeneProduct7534 (Entrez Gene)
ZA20D2GeneProduct7763 (Entrez Gene)

Annotated Interactions

No annotated interactions
Personal tools