From WikiPathways

Error rendering pathway page

This revision of the pathway probably contains invalid GPML code. If this happens to the most recent revision, try reverting the pathway using the pathway history displayed below or contact the site administrators (see WikiPathways:About) to resolve this problem.

Pathway history

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Compare	Revision	Action	Time	User	Comment
	126374	view	17:53, 25 April 2023	Egonw	License is CCZero (more specific)
	120664	view	00:03, 23 December 2021	Eweitz	Standardize font weight
	120662	view	21:46, 22 December 2021	Eweitz	Use standard font, refine graphics
	108254	view	14:14, 3 December 2019	L Dupuis	Converted interactions to graphical lines in legend
	108206	view	11:02, 29 November 2019	Fehrhart	Ontology Term : 'Alzheimer's disease' added !
	108205	view	11:02, 29 November 2019	Fehrhart	Ontology Term : 'Parkinson's disease' added !
	108204	view	11:01, 29 November 2019	Fehrhart	Ontology Term : 'major depressive disorder' added !
	108203	view	11:01, 29 November 2019	Fehrhart	Ontology Term : 'anorexia nervosa' added !
	106369	view	00:54, 23 August 2019	Khanspers	Modified description
	105563	view	06:19, 9 August 2019	Khanspers	Modified description
	97622	view	07:46, 31 May 2018	AMTan	Modified description
	94191	view	14:21, 25 August 2017	Mkutmon	added missing metabolite identifier
	94190	view	14:16, 25 August 2017	Mkutmon	added missing metabolite identifiers
	90017	view	19:26, 8 October 2016	AlexanderPico	Modified description
	89805	view	11:41, 6 October 2016	Mkutmon	fixed special characters in description
	88987	view	11:26, 18 August 2016	MirellaKalafati	Modified title
	79973	view	07:00, 29 April 2015	Zari	annotated IL8,CYP11A1 and changed box for protein and mRNA
	79562	view	15:34, 25 March 2015	Zari	added ID for EPAC gene
	78490	view	10:28, 7 January 2015	MaintBot	added missing graphIds
	71393	view	18:58, 17 October 2013	MaintBot	Removed source from datanodes with empty id
	67947	view	09:32, 28 June 2013	Ddigles	Ontology Term : 'corticotropin-releasing hormone signaling pathway' added !
	63171	view	20:28, 8 May 2013	MaintBot	Updating gpml version
	61292	view	21:59, 6 April 2013	MaintBot
	61291	view	21:58, 6 April 2013	MaintBot
	61290	view	21:56, 6 April 2013	MaintBot	removed old publication references
	61233	view	17:33, 5 April 2013	MaintBot	updated pathway elements from provided gpml
	57669	view	20:15, 31 January 2013	Khanspers	Modified categories
	57322	view	15:26, 25 January 2013	NetPath	Specify description
	53380	view	04:50, 6 November 2012	NetPath	Modified description
	53379	view	04:46, 6 November 2012	NetPath	Modified description
	53378	view	04:41, 6 November 2012	NetPath	New pathway

Error details

exception 'Exception' with message 'Unable to convert to /var/www/wikipathways/images/7/73/WP2355_61291.svg:
<BR>Status:1
<BR>Message:[     0.648] Info:  Recognized format [Namespace: prefix "" is mapped to URI "http://pathvisio.org/GPML/2013a"]
[     1.061] Info:  Document is valid according to the xml schema definition 'GPML2013a.xsd'
Warn:  Reference to non existing biopax element found: abd
Exception in thread "main" java.util.ConcurrentModificationException
	at java.util.ArrayList$Itr.checkForComodification(ArrayList.java:866)
	at java.util.ArrayList$Itr.next(ArrayList.java:838)
	at org.pathvisio.core.view.VPathway.fromModel(Unknown Source)
	at org.pathvisio.core.model.BatikImageExporter.doExport(Unknown Source)
	at org.pathvisio.core.Engine.exportPathway(Unknown Source)
	at org.pathvisio.core.util.Converter.main(Unknown Source)

<BR>Command:java -Xmx1024M -jar /var/www/wikipathways/wpi/bin/pathvisio_core.jar "/var/www/wikipathways/images/b/b8/WP2355_61291.gpml" "/var/www/wikipathways/images/7/73/WP2355_61291.svg" 2>&1<BR>' in /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php:1255
Stack trace:
#0 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1227): Pathway::convertWithPathVisio('/var/www/wikipa...', '/var/www/wikipa...')
#1 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1137): Pathway->saveConvertedByPathVisioCache('svg')
#2 /var/www/wikipathways/wpi/extensions/Pathways/PathwayPage.php(21): Pathway->updateCache('svg')
#3 [internal function]: renderPathwayPage(Object(Parser), '<?xml version="...', Object(StripState))
#4 /var/www/wikipathways/includes/Hooks.php(125): call_user_func_array('renderPathwayPa...', Array)
#5 /var/www/wikipathways/includes/parser/Parser.php(318): wfRunHooks('ParserBeforeStr...', Array)
#6 /var/www/wikipathways/includes/Article.php(3406): Parser->parse('<?xml version="...', Object(Title), Object(ParserOptions), true, true, 61291)
#7 /var/www/wikipathways/includes/Article.php(875): Article->outputWikiText('<?xml version="...', false)
#8 /var/www/wikipathways/includes/Wiki.php(437): Article->view()
#9 /var/www/wikipathways/includes/Wiki.php(59): MediaWiki->performAction(Object(OutputPage), Object(Article), Object(Title), Object(User), Object(WebRequest))
#10 /var/www/wikipathways/index.php(93): MediaWiki->initialize(Object(Title), Object(Article), Object(OutputPage), Object(User), Object(WebRequest))
#11 {main}